BO26366.complete Sequence
2431 bp assembled on 2010-07-15
GenBank Submission: KX798379
> BO26366.complete
GAAGTTATCAGTCGACATGACGTCACTGGGCGGAAGGGCGTTCTTGTGGA
TATATTTGGTTTTTCTAATAGCTGAGATCTCTCATTCGGATGCAGATTCA
ATTGATGATCAGTGCAGGCACGCAGACAGCTGCGAAAGATGTTTATCCGC
TCATCTGGAATGCGCTTGGTGCACGGACAAGGAATACCAGGTGGGATATC
GTTGTCTCTCTCGCCGGCAACTACTTAACTACAACTGCAGTGAAACGGAT
ATATACGAGAACCAGCCGGTCCTAGATGTCCTTCAGGATAAGCCCCTAAA
GGACTACGAAACCAGTGATCAGGCTGTCCAAGTCACACCCCAGCGGGCAT
ACCTTAAGTTGGTCAAAGGAAACACGCAAAGAATGAAGCTGAGCTATAGA
ACTGCACGCAACAATCCACTCGATTTGTACGTATTGATGGATCTAACCTG
GACAATGAGGGATGACAAGAAAACCCTGGAGGAGTTGGGAGCCCAACTCA
GTCAGACTCTTAAAAATCTAACAGGAAACTACAGATTGGGATTTGGTTCT
TTCGCGGACAAGCCAACTCTACCCATGATTCTGCCACAGCATAGGGAAAA
CCCCTGTGCTGCGGAGCGGGCCACGTGTGAACCAACCTATGGATATAGAC
ATCAACTTTCGCTAACCGATGATATACCAGCGTTCACCTCAGCCGTGGCG
AACAGCAAAATCACTGGAAACTTGGACAATCTCGAAGGTGGCTTGGATGC
TCTAATGCAGGTTATAGTGTGCACCAAGGAAATCGGCTGGAAGGAACAAG
CTCGAAAAGTGGTGATCTTAGTGACCGATGGCTTTATGCACTTAGCGGGG
GACGGTCTTCTAGCAGGTATTATCCAGCGCAATGATAAGCAGTGTCACCT
GAATAAAGCAGGTGAGTACACGGGTTCATTGAACTACGACTACCCCTCGC
TGGAAGAAATCTATCGGGAGTTGCTTCGTCGCAAGATTAATGTAATCTTT
GCTGTCACCGAGGAGGTTGTAAGTAGCTATTGGGAACTCAGTGCCCTAAT
GAAGGAAATTAGTTACGTGGACATCCTAAGTGCTGATTCCTCTAATATAT
TGGAACTAATCAAAAAGAGCTATGAGAGTTTGATTAAACGCACTCAGTTT
GCCGATAACAGCCCGGATTTTATTGACATGGCTTACTATACGGATTGCGG
TGGTCAGTTTCCCAGCTTACAAAAGCGGAATTACTGCAATAACGTCACTC
TGGGCAAGCAGATTGATTTCTACGTGGACGTCACTCTCAAGAAATATCCC
GATAATCAGGTTTATACACACAAAATCCGGGTGGAGGAAACCTCCTTGAG
CGAGTTCATGGATTTGGATGTTGAGCTTCAGCGGCCGTGTCCCTGTCAGG
AAACACCAGATCCGGAAAACGAGGAAGGACGTTTCCTGTGCGATTATAAG
GGCTATTTGTACTGCGGAATGTGCGAATGCGATGAGGGGTGGACTGGGAC
CTATTGCAACTGTCCCACAGATGCCACAAATGTCACCAGCAATGAAGCTC
TGCTCCAGAAATGCCGTCAACCGTTTTCGGATAAATCCACCTCCGAATTG
GTTTGCTCCAATCACGGGGACTGTGACTGCGGAACTTGCTTGTGTGATCC
TGGATATACGGGTCCTTTTTGCGAGTGTCGCGAATGCCTGGACTGCGATG
AAAAGCTGGCTGATTGTTTCTGCGGCCAATGCGTTTGCAAATACGGATGG
TCGGGTAGCAAATGCAACTGCGATGGGGATACCGATGCCTGTGTGGGACC
CACGGGCGAAATATGCTCGGAAAGAGGCACCTGCCAGTGCGAGGAGTGCC
AGTGTGAGGAGCCGTATTTGGGTAAATTCTGTGAAATCGATCCAGAGAAG
GACAACAAACTTTGTTTGTTCTACGAGCCCTGTGTCACATGTCTGATCGA
GCAAAAACAGGGAATGGGCGTCTGCGAAAACTTGACTGAAATATGCAGCA
GTTTGGATAGACAAGAAACCTATCCATACAACTTTGTCCACGAGCTGGAT
CCTGAGCAGGATCAATGCTTGGTACGACTGGTGAACAAACATGGCATCCA
ATGCGACAGCTTCTTCGTCTATCAGGTCATCGACCACTCAAACTTCTTGA
CCATCCAGGCAGTTGATTGCGAGCCCCCGGATTACGTGGCTCTGGTGGGA
TATATATCGGCATTTACGCTGCTCATTGGACTTTTGATCATTTTCATAAT
TCTGTGGTACATTCGAGCTAAGGATGCCAGGGAATATGCCAAGTTTGAGG
AAGATCAGAAGAATAGTGTCCGACAGGAGAATCCAATTTACAGGGATCCA
GTGGGTAGATATGAAGTGCCCAAGGCGCTAAGTGTTAAGTATGATGAGAA
TCCTTTCGCAAGTGCAAGCTTTCTAGACCAT
BO26366.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Itgbetanu-RB | 2400 | CG1762-PB | 1..2397 | 17..2413 | 11985 | 100 | Plus |
| Itgbetanu-RA | 2400 | CG1762-PA | 1..2397 | 17..2413 | 11985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Itgbetanu-RB | 3076 | CG1762-RB | 102..2498 | 17..2413 | 11985 | 100 | Plus |
| Itgbetanu-RA | 3340 | CG1762-RA | 102..2498 | 17..2413 | 11985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21056100..21057202 | 1311..2413 | 5500 | 99.9 | Plus |
| 2L | 23513712 | 2L | 21054992..21055744 | 367..1119 | 3765 | 100 | Plus |
| 2L | 23513712 | 2L | 21055801..21055998 | 1118..1315 | 990 | 100 | Plus |
| 2L | 23513712 | 2L | 21053456..21053645 | 180..369 | 950 | 100 | Plus |
| 2L | 23513712 | 2L | 21053134..21053221 | 17..104 | 440 | 100 | Plus |
| 2L | 23513712 | 2L | 21053284..21053362 | 104..182 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:06:49 has no hits.
BO26366.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:01:24 Download gff for
BO26366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaInt-nu-RA | 303..2699 | 17..2415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:30 Download gff for
BO26366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Itgbetanu-RA | 102..2498 | 17..2415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:44:08 Download gff for
BO26366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Itgbetanu-RA | 102..2498 | 17..2415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:44:08 Download gff for
BO26366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21053134..21053221 | 17..104 | 100 | -> | Plus |
| 2L | 21053285..21053361 | 105..181 | 100 | -> | Plus |
| 2L | 21053458..21053644 | 182..368 | 100 | -> | Plus |
| 2L | 21054994..21055744 | 369..1119 | 100 | -> | Plus |
| 2L | 21055803..21055998 | 1120..1315 | 100 | -> | Plus |
| 2L | 21056105..21057202 | 1316..2415 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:30 Download gff for
BO26366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21053134..21053221 | 17..104 | 100 | -> | Plus |
| arm_2L | 21053285..21053361 | 105..181 | 100 | -> | Plus |
| arm_2L | 21053458..21053644 | 182..368 | 100 | -> | Plus |
| arm_2L | 21054994..21055744 | 369..1119 | 100 | -> | Plus |
| arm_2L | 21055803..21055998 | 1120..1315 | 100 | -> | Plus |
| arm_2L | 21056105..21057202 | 1316..2415 | 99 | | Plus |
BO26366.pep Sequence
Translation from 16 to 2431
> BO26366.pep
MTSLGGRAFLWIYLVFLIAEISHSDADSIDDQCRHADSCERCLSAHLECA
WCTDKEYQVGYRCLSRRQLLNYNCSETDIYENQPVLDVLQDKPLKDYETS
DQAVQVTPQRAYLKLVKGNTQRMKLSYRTARNNPLDLYVLMDLTWTMRDD
KKTLEELGAQLSQTLKNLTGNYRLGFGSFADKPTLPMILPQHRENPCAAE
RATCEPTYGYRHQLSLTDDIPAFTSAVANSKITGNLDNLEGGLDALMQVI
VCTKEIGWKEQARKVVILVTDGFMHLAGDGLLAGIIQRNDKQCHLNKAGE
YTGSLNYDYPSLEEIYRELLRRKINVIFAVTEEVVSSYWELSALMKEISY
VDILSADSSNILELIKKSYESLIKRTQFADNSPDFIDMAYYTDCGGQFPS
LQKRNYCNNVTLGKQIDFYVDVTLKKYPDNQVYTHKIRVEETSLSEFMDL
DVELQRPCPCQETPDPENEEGRFLCDYKGYLYCGMCECDEGWTGTYCNCP
TDATNVTSNEALLQKCRQPFSDKSTSELVCSNHGDCDCGTCLCDPGYTGP
FCECRECLDCDEKLADCFCGQCVCKYGWSGSKCNCDGDTDACVGPTGEIC
SERGTCQCEECQCEEPYLGKFCEIDPEKDNKLCLFYEPCVTCLIEQKQGM
GVCENLTEICSSLDRQETYPYNFVHELDPEQDQCLVRLVNKHGIQCDSFF
VYQVIDHSNFLTIQAVDCEPPDYVALVGYISAFTLLIGLLIIFIILWYIR
AKDAREYAKFEEDQKNSVRQENPIYRDPVGRYEVPKALSVKYDENPFASA
SFLDH
BO26366.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Itgbetanu-PB | 799 | CG1762-PB | 1..799 | 1..799 | 4364 | 100 | Plus |
| Itgbetanu-PA | 799 | CG1762-PA | 1..799 | 1..799 | 4364 | 100 | Plus |
| mys-PB | 846 | CG1560-PB | 40..841 | 33..785 | 1043 | 31.4 | Plus |
| mys-PD | 846 | CG1560-PD | 40..841 | 33..785 | 1030 | 30.9 | Plus |
| mys-PC | 846 | CG1560-PC | 40..841 | 33..785 | 1030 | 30.9 | Plus |
