BO26370.complete Sequence
2272 bp assembled on 2010-12-13
GenBank Submission: KX798994
> BO26370.complete
GAAGTTATCAGTCGACATGGCCGCCACTACCACAACAACAACCACAACAC
TAGCAACAACCACCGGCAATAGCAGCTCCACAAACAACAGCAGCAGCAAC
AACAACAACAGCATCGCCAGCAGTCACAACAACAACAACAACATTGTTAC
CGTACACACCGTACTGAACAACCCACCCACCAATACTGCAGGCGGTGGTG
TTGCCGACGCCGCCACCGTTGCCATTGCCAAGGACATGTTGCAGCTGCAT
CATGGCGCAGCAGCAGCAGCAACAGCGGCGCTGAATAACTACAACAATAG
CAGCAACAATAACAACAACAGCGCCGATCAGCTGACCGGCAACAGCAACA
ATTCAGCAAACCACCCACCTGCCACCAGTAGCACCACCAACTCCTCCTCA
TCCTCCACCACCTCCGCCAACACCAACAACCCCTCTGCCAATGCGGCATC
GACATTAACATCATCTTCCCCGCCATATGGAGAACTACGCTTCAATCAGG
AGGTACTGCCCATCACGGATGCCGTGACAGTAATCGGACGCAACTCGTCC
ACGTCGCTGGTTCACTTCAACGTTGCCGAGAACAACCTTGTGTCGCGCAA
ACACTTTCAGGTGCTCTACGATGTGGAGCTGCGAGCCTTCTTTGTCCAGT
GCCTAAGCAAGAATGGCATCTTTGTGGATGATTTCCTGCAGCGCCGCAAT
GTGGATCCACTTCGTTTGCCGCAGCGCTGCTACTTCCGCTTCCCGAGCAC
GGAGATTCGTATCGAGTTCGAGAGCTATGTGCCCGCCACTTCATCGGATG
CAATTGACGGTCATTCGCCATCGTTAGTCGTTGGTGGTGGTGGTGGAGTA
GCTGGTGGTGGAGCGCACGTTATTATTACACCGCTACCGAGGGACGAACT
TCACCAGCAGCAATTGCATCACCACCAGCAACAGCCGCATCTGCAGCAAC
AGCAGCATCCACACCACCCGCCAGCGCACCACCTGCCGTTGCAGCAGCAG
CAGCAGCAGCAACAACCGGCGCACCACCCGCTCCCGCACACACCACACCA
CCCGCTCCACCACACAGCACTGCACCAGCAGCAACAGCGTAGTGGCAGCA
TCGTTGTGGCCCCTCCAGCTGGAGCAGCTGCCCACCTAATTGCCGGCGAT
GGACCCGGCATATATTCACCGCTCAAAATATCCATACCCAAGAAGGAGCA
GAAGAGCCCCTACCTATCACCAACTGGTACAATAAGCGCTGCCAACAGTT
GTCCGGCTAGTCCACGTCAGGGTTTCATTCAGAATCAGCCCAATAATTAC
AATAACTACGGTAACAACAATACACAGGATCTGTTCCAGACTCCCTCCAC
AGCCAGCTACAATCACAACGAGAAGCCGCCGTATAGCTATGCCCAGCTCA
TCGTTCAGGCCATATCTGCCGCACCGGACAAGCAGCTAACGCTCTCGGGC
ATTTATTCGTTTATAGTCAAGCATTACCCGTATTACCGCAAGGAGACGAA
CAAGGGCTGGCAGAATTCCATACGTCATAATCTCAGTTTGAATAGGTATT
TCATCAAGGTGGCCCGCTCCCAGGACGAGCCCGGAAAGGGTTCCTTCTGG
CGTATTGATCCGGACAGCGGTGCCAAGCTGATCGACCATAGCTACAAGAA
GCGTCGCCAGCGAAGCAGCCAGGGCTTCCGGCCTCCATACGGTATGCCCC
GCTCGGCGCCAGTCTCGCCCAGTCACATGGATAATTCGCGCGAGAGCTCA
CCGCTCCAAGATATTGTGTTGCAATCAGCACCTGGATCACCGGGCATGTC
GCTGGAACAGCGAGCTGCTGATCCCGAAATTATTTACAACTCACAAAATG
CACACCAGCAACAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGACACTG
TCAAACAATTCCAATCAGTACAGTAGTGGCAGTCCGTACTACGTAACCAA
TCAAAGCTCTGGAGTGGCCACACCACAGACGCATGTGGAAGGAAGCGCAG
CGAGCGGCGGCGGCGGAGGCGGCGGGGTTGGAGCTCTGCTTGCGCTAAAG
AGGAACCATGTGATGGGCGGCGGGGCATCGCAGCATACGCTGCATCAGCA
GCAGGCCGTGGCCCAGCAACAGCATTCAGAGATTATCTACGAGGAGTTGC
CGACCGACTACAGCGGCCACATTGAGGCCAGCGAGGAGGAGTGCGTCACC
ACTGCCACCGATGCCACCGTGGCCAAGCGACCCAAGTATGTGTCGGAAGT
GCTCGCAAGCTTTCTAGACCAT
BO26370.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd68A-RN | 2283 | CG11799-PN | 1..2238 | 17..2254 | 11190 | 100 | Plus |
| fd68A-RJ | 2241 | CG11799-PJ | 1..2238 | 17..2254 | 11190 | 100 | Plus |
| fd68A-RI | 2241 | CG11799-PI | 1..2238 | 17..2254 | 11190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd68A-RN | 3382 | CG11799-RN | 226..2463 | 17..2254 | 11190 | 100 | Plus |
| fd68A-RJ | 3338 | CG11799-RJ | 182..2419 | 17..2254 | 11190 | 100 | Plus |
| fd68A-RI | 3159 | CG11799-RI | 104..2341 | 17..2254 | 11190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11117305..11118014 | 726..17 | 3550 | 100 | Minus |
| 3L | 28110227 | 3L | 11116669..11117170 | 1227..726 | 2510 | 100 | Minus |
| 3L | 28110227 | 3L | 11115088..11115421 | 2254..1921 | 1670 | 100 | Minus |
| 3L | 28110227 | 3L | 11116138..11116361 | 1548..1325 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 11115886..11116076 | 1734..1544 | 940 | 99.5 | Minus |
| 3L | 28110227 | 3L | 11116428..11116526 | 1324..1226 | 495 | 100 | Minus |
| 3L | 28110227 | 3L | 11115484..11115581 | 1923..1826 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 11115717..11115813 | 1826..1730 | 485 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6899 | 845..1088 | 345 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2938 | 907..1100 | 289 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2505 | 257..465 | 275 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6941 | 258..450 | 262 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6945 | 241..403 | 229 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2529 | 258..465 | 218 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6896 | 287..465 | 210 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6946 | 259..498 | 200 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6857 | 991..1128 | 184 | 63.3 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 685..714 | 2195..2224 | 114 | 86.7 | Plus |
BO26370.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:59 Download gff for
BO26370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd68A-RI | 104..2341 | 17..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:27 Download gff for
BO26370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd68A-RI | 104..2341 | 17..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:26 Download gff for
BO26370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd68A-RI | 104..2341 | 17..2256 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:26 Download gff for
BO26370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11115085..11115418 | 1924..2256 | 99 | <- | Minus |
| 3L | 11115484..11115580 | 1827..1923 | 100 | <- | Minus |
| 3L | 11115717..11115812 | 1731..1826 | 100 | <- | Minus |
| 3L | 11115890..11116074 | 1546..1730 | 100 | <- | Minus |
| 3L | 11116141..11116361 | 1325..1545 | 100 | <- | Minus |
| 3L | 11116428..11116525 | 1227..1324 | 100 | <- | Minus |
| 3L | 11116670..11117169 | 727..1226 | 100 | <- | Minus |
| 3L | 11117305..11118014 | 17..726 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:27 Download gff for
BO26370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11109528..11109625 | 1227..1324 | 100 | <- | Minus |
| arm_3L | 11108185..11108518 | 1924..2256 | 99 | <- | Minus |
| arm_3L | 11108584..11108680 | 1827..1923 | 100 | <- | Minus |
| arm_3L | 11108817..11108912 | 1731..1826 | 100 | <- | Minus |
| arm_3L | 11108990..11109174 | 1546..1730 | 100 | <- | Minus |
| arm_3L | 11109241..11109461 | 1325..1545 | 100 | <- | Minus |
| arm_3L | 11109770..11110269 | 727..1226 | 100 | <- | Minus |
| arm_3L | 11110405..11111114 | 17..726 | 100 | | Minus |
BO26370.pep Sequence
Translation from 16 to 2272
> BO26370.pep
MAATTTTTTTTLATTTGNSSSTNNSSSNNNNSIASSHNNNNNIVTVHTVL
NNPPTNTAGGGVADAATVAIAKDMLQLHHGAAAAATAALNNYNNSSNNNN
NSADQLTGNSNNSANHPPATSSTTNSSSSSTTSANTNNPSANAASTLTSS
SPPYGELRFNQEVLPITDAVTVIGRNSSTSLVHFNVAENNLVSRKHFQVL
YDVELRAFFVQCLSKNGIFVDDFLQRRNVDPLRLPQRCYFRFPSTEIRIE
FESYVPATSSDAIDGHSPSLVVGGGGGVAGGGAHVIITPLPRDELHQQQL
HHHQQQPHLQQQQHPHHPPAHHLPLQQQQQQQQPAHHPLPHTPHHPLHHT
ALHQQQQRSGSIVVAPPAGAAAHLIAGDGPGIYSPLKISIPKKEQKSPYL
SPTGTISAANSCPASPRQGFIQNQPNNYNNYGNNNTQDLFQTPSTASYNH
NEKPPYSYAQLIVQAISAAPDKQLTLSGIYSFIVKHYPYYRKETNKGWQN
SIRHNLSLNRYFIKVARSQDEPGKGSFWRIDPDSGAKLIDHSYKKRRQRS
SQGFRPPYGMPRSAPVSPSHMDNSRESSPLQDIVLQSAPGSPGMSLEQRA
ADPEIIYNSQNAHQQQQQQQQQQQQQTLSNNSNQYSSGSPYYVTNQSSGV
ATPQTHVEGSAASGGGGGGGVGALLALKRNHVMGGGASQHTLHQQQAVAQ
QQHSEIIYEELPTDYSGHIEASEEECVTTATDATVAKRPKYVSEVLASFL
DH
BO26370.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd68A-PN | 760 | CG11799-PN | 1..746 | 1..746 | 3923 | 100 | Plus |
| fd68A-PJ | 746 | CG11799-PJ | 1..746 | 1..746 | 3923 | 100 | Plus |
| fd68A-PI | 746 | CG11799-PI | 1..746 | 1..746 | 3923 | 100 | Plus |
| fd68A-PH | 746 | CG11799-PH | 1..746 | 1..746 | 3923 | 100 | Plus |
| fd68A-PG | 746 | CG11799-PG | 1..746 | 1..746 | 3923 | 100 | Plus |
