BO26379.complete Sequence
1087 bp assembled on 2010-07-01
GenBank Submission: KX796857
> BO26379.complete
GAAGTTATCAGTCGACATGGTCACATACAATACTCTAATACAGAACGAAA
AGAATGAAAATGTGGTCGCCCCGATAAGCCGGCCATTCGCCAGAAAGAGG
AGGACTGAGATTCGCCGCCTGCAGTCCAACAGGCGGTTGAATAAAAAGGT
GTGCAAACACCATTTGGACATTGCCCATTGTACCCAGAAGAAGGCTCCAT
GGCGGAATTGGGCATACCTCATTCTCGCCCTCGCCGCAGGAATTGGCATG
TTATTGCAGTTCACCGACAAGTTGTCCACGGTCAGCGGATTCCTGGAAAG
CTACAAAAACCAGTACCACTCGATCGTCCACAACCAGGACAACTACTGCA
ATCCCTCCCGACGGCTGGGCGACATGGTCCTGCACGCCCGCCACCAGGTA
CTCAACCAGGATCTTGCATTGAACCAGCTAGAACTGGCACTGGACAACAC
CACCAATGAGGCAATCGTCTTGGTGGGCACCTCTGGCGTAGGCAAGAGCC
ACACTGCGCGAATCTTGCGCGAAACGTTTCCCTGGCCCGAGAACGTGAAT
ACACTCTCCTGGACCGGCAGTTCTTCTTTGGGCCGAGTGAAGAGCATGCT
ATCCGGCCTGACATATTGCGGACAGAATATGATCTTGATTGATAACATGA
CGCCGAAGGATGCACACTTCGTGCCTATCATTAACGAAATGATAAGTGAG
GGCGAAAAGAGCGCCAACCACACTGAGCATCCGCAACAGAAGCGGTTGAC
CATTGTGTTTATCTTTAATGTGAATAGCATGCAGCCCGGCGAGGAGTTTG
AGATGGATATGGAGATCCTTAGAAATATGCCACACACCCAGTTGGTCACC
TTTGCGACTCTGGATCCCACCCATCTGGTCGACTGCATCCGCAGGGAAGC
CGCCATCGCAATGGTGCACCTGGAAGACGAGCACGTAGAAGAGATAATCA
AAAGTATCGATGCTAGCGCTTCTGGCTGCAAGTCGATTTTGGCCAAGGTC
CTGCTCTACGGCAAACCAATAATCGCAGACTCCCAGGATACTGACCAAGT
CCTTCCAGTAGGTTCCTTTGCAAGCTTTCTAGACCAT
BO26379.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4880-RA | 1056 | CG4880-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
| CG4880-RB | 993 | CG4880-PB | 380..990 | 459..1069 | 3055 | 100 | Plus |
| CG4880-RB | 993 | CG4880-PB | 1..382 | 17..398 | 1910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4880-RA | 1700 | CG4880-RA | 150..1202 | 17..1069 | 5265 | 100 | Plus |
| CG4880-RB | 1505 | CG4880-RB | 529..1139 | 459..1069 | 3055 | 100 | Plus |
| CG4880-RB | 1505 | CG4880-RB | 150..531 | 17..398 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16887621..16888231 | 459..1069 | 3055 | 100 | Plus |
| X | 23542271 | X | 16886967..16887411 | 17..461 | 2225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:59:44 has no hits.
BO26379.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:05 Download gff for
BO26379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4880-RA | 138..1190 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:42 Download gff for
BO26379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4880-RA | 150..1202 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:09 Download gff for
BO26379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4880-RA | 150..1202 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:09 Download gff for
BO26379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16886967..16887410 | 17..460 | 100 | -> | Plus |
| X | 16887623..16888231 | 461..1071 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:42 Download gff for
BO26379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16781000..16781443 | 17..460 | 100 | -> | Plus |
| arm_X | 16781656..16782264 | 461..1071 | 99 | | Plus |
BO26379.pep Sequence
Translation from 16 to 1087
> BO26379.pep
MVTYNTLIQNEKNENVVAPISRPFARKRRTEIRRLQSNRRLNKKVCKHHL
DIAHCTQKKAPWRNWAYLILALAAGIGMLLQFTDKLSTVSGFLESYKNQY
HSIVHNQDNYCNPSRRLGDMVLHARHQVLNQDLALNQLELALDNTTNEAI
VLVGTSGVGKSHTARILRETFPWPENVNTLSWTGSSSLGRVKSMLSGLTY
CGQNMILIDNMTPKDAHFVPIINEMISEGEKSANHTEHPQQKRLTIVFIF
NVNSMQPGEEFEMDMEILRNMPHTQLVTFATLDPTHLVDCIRREAAIAMV
HLEDEHVEEIIKSIDASASGCKSILAKVLLYGKPIIADSQDTDQVLPVGS
FASFLDH
BO26379.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:20:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4880-PA | 351 | CG4880-PA | 1..351 | 1..351 | 1825 | 100 | Plus |
| CG4880-PB | 330 | CG4880-PB | 1..330 | 1..351 | 1691 | 94 | Plus |
| CG7557-PB | 336 | CG7557-PB | 104..333 | 104..332 | 297 | 32.5 | Plus |
| CG7557-PA | 355 | CG7557-PA | 123..352 | 104..332 | 297 | 32.5 | Plus |
