BO26381.complete Sequence
1249 bp assembled on 2010-07-01
GenBank Submission: KX798459
> BO26381.complete
GAAGTTATCAGTCGACATGAGTGTCTGTGAGAGCAAAGCCGTTGTGCAAC
AGCAACTGCAGCAGCACTTGCAGCAACAGGCAGCCGCAGCAGTTGTTGCG
GTCGCGCAACAGCAGCAGGCTCAAGCCCAAGCCCAGGCTCAGGCTCAGGC
ACAGCAGCAGCAACAGGCGCCGCAGGTGGTGGTCCCCATGACCCCGCAGC
ACTTGACCCCACAGCAGCAGCAGCAGAGCACACAGAGCATCGCCGACTAT
CTGGCCCAGTTGCTCAAGGACCGCAAGCAACTGGCCGCCTTCCCCAACGT
CTTCACCCACGTCGAACGCCTGCTGGACGAAGAAATTGCACGCGTGCGCG
CCTCACTGTTCCAGATCAATGGGGTCAAGAAGGAGCCGCTCACTCTGCCC
GAACCCGAGGGCTCTGTGGTGACGATGAACGAGAAGGTTTATGTGCCAGT
CCGCGAGCATCCAGATTTCAACTTTGTCGGTCGCATTTTGGGACCCCGTG
GCATGACCGCCAAGCAATTGGAACAGGAGACCGGCTGCAAGATTATGGTC
CGAGGCAAGGGTTCCATGCGCGACAAGAAGAAGGAGGACGCCAACCGTGG
CAAGCCTAACTGGGAGCATCTGTCCGATGACCTGCATGTCCTGATAACCG
TCGAGGACACCGAGAACCGTGCCACAGTGAAGTTGGCCCAGGCCGTCGCC
GAAGTACAGAAGTTGCTCGTGCCGCAAGCCGAAGGCGAAGATGAGCTAAA
GAAACGTCAACTCATGGAATTGGCGATTATTAATGGCACTTATAGGGACA
CAACAGCGAAATCTGTCGCAGTGTGCGATGAGGAGTGGCGCCGCCTGGTT
GCCGCCTCTGATAGCCGCCTGCTGACATCCACCGGCCTGCCCGGCCTTGC
CGCCCAGATCCGTGCACCCGCCGCCGCCCCGCTTGGCGCCCCATTGATCC
TGAATCCCCGGATGACCGTCCCCACAACGGCGGCCAGCATATTGTCCGCC
CAGGCCGCTCCGACAGCCGCCTTCGACCAGACCGGCCATGGAATGATCTT
CGCACCGTACGATTATGCGAACTACGCCGCCCTAGCCGGCAATCCTCTGC
TCACGGAATATGCTGATCATAGCGTAGGCGCCATTAAGCAGCAGCGTCGT
TTGGCGACTAACCGCGAGCATCCCTATCAGCGAGCAACGGTCGGAGTGCC
AGCCAAGCCGGCGGGTTTCATTGAGATACAGGCAAGCTTTCTAGACCAT
BO26381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| how-RD | 1218 | CG10293-PD | 1..1215 | 17..1231 | 6075 | 100 | Plus |
| how-RA | 1218 | CG10293-PA | 1..1215 | 17..1231 | 6075 | 100 | Plus |
| how-RE | 1215 | CG10293-PE | 1..1212 | 17..1231 | 5995 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| how-RD | 3884 | CG10293-RD | 323..1537 | 17..1231 | 6075 | 100 | Plus |
| how-RA | 3964 | CG10293-RA | 323..1537 | 17..1231 | 6075 | 100 | Plus |
| how-RE | 3103 | CG10293-RE | 323..1534 | 17..1231 | 5995 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22043064..22043379 | 17..332 | 1580 | 100 | Plus |
| 3R | 32079331 | 3R | 22071734..22072041 | 817..1124 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 22070805..22070947 | 582..724 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 22062723..22062858 | 331..466 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 22069111..22069228 | 467..584 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 22074448..22074555 | 1124..1231 | 540 | 100 | Plus |
| 3R | 32079331 | 3R | 22071332..22071429 | 724..821 | 490 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6858 | 81..225 | 157 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2467 | 32..225 | 153 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2502 | 106..307 | 133 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6827 | 140..241 | 132 | 62.3 | Plus |
BO26381.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:04 Download gff for
BO26381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| how-RA | 322..1536 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:40 Download gff for
BO26381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| how-RA | 323..1537 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:06 Download gff for
BO26381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| how-RA | 323..1537 | 17..1233 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:06 Download gff for
BO26381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22043064..22043379 | 17..332 | 100 | -> | Plus |
| 3R | 22062725..22062858 | 333..466 | 100 | -> | Plus |
| 3R | 22069111..22069227 | 467..583 | 100 | -> | Plus |
| 3R | 22070807..22070947 | 584..724 | 100 | -> | Plus |
| 3R | 22071333..22071429 | 725..821 | 100 | -> | Plus |
| 3R | 22071739..22072041 | 822..1124 | 100 | -> | Plus |
| 3R | 22074449..22074555 | 1125..1233 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:40 Download gff for
BO26381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17868786..17869101 | 17..332 | 100 | -> | Plus |
| arm_3R | 17888447..17888580 | 333..466 | 100 | -> | Plus |
| arm_3R | 17894833..17894949 | 467..583 | 100 | -> | Plus |
| arm_3R | 17896529..17896669 | 584..724 | 100 | -> | Plus |
| arm_3R | 17897055..17897151 | 725..821 | 100 | -> | Plus |
| arm_3R | 17897461..17897763 | 822..1124 | 100 | -> | Plus |
| arm_3R | 17900171..17900277 | 1125..1233 | 98 | | Plus |
BO26381.pep Sequence
Translation from 16 to 1249
> BO26381.pep
MSVCESKAVVQQQLQQHLQQQAAAAVVAVAQQQQAQAQAQAQAQAQQQQQ
APQVVVPMTPQHLTPQQQQQSTQSIADYLAQLLKDRKQLAAFPNVFTHVE
RLLDEEIARVRASLFQINGVKKEPLTLPEPEGSVVTMNEKVYVPVREHPD
FNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWE
HLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLM
ELAIINGTYRDTTAKSVAVCDEEWRRLVAASDSRLLTSTGLPGLAAQIRA
PAAAPLGAPLILNPRMTVPTTAASILSAQAAPTAAFDQTGHGMIFAPYDY
ANYAALAGNPLLTEYADHSVGAIKQQRRLATNREHPYQRATVGVPAKPAG
FIEIQASFLDH
BO26381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| how-PD | 405 | CG10293-PD | 1..405 | 1..405 | 2042 | 100 | Plus |
| how-PA | 405 | CG10293-PA | 1..405 | 1..405 | 2042 | 100 | Plus |
| how-PE | 404 | CG10293-PE | 1..404 | 1..405 | 2026 | 99.8 | Plus |
| how-PF | 418 | CG10293-PF | 1..418 | 1..405 | 2001 | 96.4 | Plus |
| how-PC | 380 | CG10293-PC | 1..371 | 1..371 | 1868 | 100 | Plus |
