Clone BO26393 Report

Search the DGRC for BO26393

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:263
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptprominin-like-RA
Protein status:BO26393.pep: Imported from assembly
Sequenced Size:3073

Clone Sequence Records

BO26393.complete Sequence

3073 bp assembled on 2010-11-23

GenBank Submission: KX799498

> BO26393.complete
GAAGTTATCAGTCGACATGGGTGAAGTAGCTGCCACAGTGGAGCCTCTGG
CCGCGGTCAAGTCGAAATCCATGCGATCCCGGAAGAGACGACAGCGTCGT
AGGCGACAAATAGCCTACCTGGCCATATGTGGATTAAGTGTAGCCATATT
CGGCTTCGCTTTGGCCACGCTGATCCGGCCCACAACCGCCCAGGCTGATG
CAGATCCCGGGAGCTGGCGCAAGGGATATGTGGGCCATGGCACCACGCAC
GAACAGCTTGGCCAGCCCCATTGGCCACCAGTCCAGTACACTGTATACCG
GCCGACAACCAACTACACAAAGGCACCACCACCTCCCACGTCCGCCATGA
ACCCCATTTTCAATTTTACACACTTTCTATATGACAAGGTTCTTTATAGG
GATGAACCCATTCCGGAGGGTTACATTGTCGTAAAGAATTCGGACACTTT
GAGCTTGGGTCCCAAAGTGGAGGAGAATGACTGGCGGGATCTATTGGCTC
ATTATTGGATGGTTCTCATCTGGGTTGTTATTCTCGTGGTGCTCATTATA
GTCATACCGTTCATTGCCGTTTGCTATTGCTGTTTCTGTTGCTGCCGACG
ATGTCGACAGGGATGTCCTCCGTGTACCAGTAAACAGGATGCTCAGCGGC
GCTTCTGTTGTGGCATCTGTCTGTTGATCCTCATCATCGGACTGATTTTT
GGCATCATTATCGCCTTTGTTACCAACAAAATGATTGACAGCGGCTTTGC
CGAGACTTCCGAGACAATGAAGCGCGGCAGCGAGGACACTTGCACTTATC
TGAAGGATGTAGCCGATCACGTTCACCATCTGATGATGTACAACTACGAG
GAGATGGAGACTCATGTGCTTGATCAATTAACCCACGCTCACCGGCACAT
ATTTTTGGATCTCTCCGACACATCGGAGAGTAATTCCTTGGCAGAAATGG
AGCGAGTTTTGGAGAACATGCCCGAGGCTCTGGAGCTGATGAGGCAAGTG
GAGAAGATGGAGAAAGATCTGCGCTTCTATGGCTCCCAATTAAGAGATGG
CGTCCGTGGCATTAAACGAGATGTCAACTTTGCAGTGGCCAATCTCTGTC
AACTGCAGATGTGCCAGAAGTTCCTGATTAGCAGCAATATCGAACACATT
GATTCCTCGCAATGCCTGCACTTCGACAACCTCCCGAACACCAAAGAATT
TGTAGAGGGAATGGAGAATATAGTTGCAAGTGAGTATTACGCTATACCTC
AACGGGGACTCTCGCGTCTAAAGAAGGTTAGCGACAAGGTGAAGACGCAA
CTCTCCTTCGTGGTACCACCCATGATGCGGGACTTAACGAAGGGCAGGAC
AATCTTCCGAGAACATGCGACGAATGTGCGCAACATTGTGGAGGGAGTAC
TAAGTGATATCCATATAAAAACTCTGCACTCGACTAAGTCATTCGAGGAC
GTCTACGAGCGGTTTGGCCATGATAGAAACGTTGTCAGCCTGATTGTGTG
CTTGCTTATTCTTCTGGTACTTTTTATTTTGATCTTTGCTCTACTGTGCG
GTTGCTTTGGGCGCCGACGAACTGGATATGGTGATGAATGCTGCAGCAAG
TCCACCGGAGCCACCTGCCTGCTTCTAGCCATACTGCTGATATTCTGTGT
TTTCTCCTTCATCGCACTGGTTGGACTTTTCTACTTTATGCTGGGTATGG
TAACCTACCAGGGTGCCTGTGCACCACTGAGAGATCAGGAGAACAACACA
TTGTTCCGGCAACTGGACGCGTCTATAGATCTGAATCACTATTTGCCGCC
ATCTGAAAGTAACAAGGAAGTGGTGCAACCACTAAAAATGTCGAGTGCAA
TCAAGGCTTGCCACGCCAATCAGACCATTTTCGATATGATGCGTCAGCAT
AACATATATGACATCAACGATCTGACGCGCATAAAAGTGATGTCACACTC
ACAGGAAAATACAGATTCGATTAAGGTCTTCGACGAGGACCTGTCCACCG
TGGTACTCCTGACGAAGGAAGAACGTGACGAGTTAAAGACAGCGGGCGAG
AGCAAGCTTGCGAAGTACCATAGCTCCCTGTACATGCCAAGTCTGTGCAC
CCAGTTTACGCCCATGAACCTGAACGCCCTGTCCGAGCAGCTGTATAAGC
TATCCAACGATCTGGAGTATCCGGCATACGGCTGGGCCAAGGTGTCATTC
TGGAATGAGGGCCTCAACACCAAGGCCTTCTATCGCAATTTTGTACCGAA
GCTTACGAGCCTCGTAGAGAAGATGAAGGCCAATCTAAAGAAGATCGACG
AGTTAATTTCGTACGAGAACCACGACTTTACCAATACAATCAAAATTCTC
ACTGCCACGGCCATCAACTCCGAACAGTTCATCCAAACACGCGGCAAGGA
CTATATCAACGCCCTAGGAGGCAATCTGACGAATTCCATTGACCAGATGA
TCGACGACTACATAGATATGATTATAAAGGAGGCCAACGAAAGTGTGGGT
CATTGTGCACCCCTGTCGTACATATATTATCGTGGAGTCGATTTGATTTG
CCACCGTATCGTGGATCCCATCAATGGATTCTGGGTAGGCATACTGCTGT
GCGCCCTGCTCTTCCTGCCCATCCTGTTCGTGGCCCACCGCCTGATGTGC
CTCTACAAGAAAATCTATCCTTACCTGGCTACCGTAGGAGCCGCTGGAGT
GGTCGAGGGCGGAAGCGATTATCTGTACGATGCTTATAGTGAACGAGATC
GTGAACATGTACCATTGGCTAACGTTCCCAAGAAGCGTCGCAAGGCCTAC
GAGCGGCGACGGGAGCAGCAGGATTACTTCGAGGACGCCTCGCCCAGCGT
TTCGCGTGGCAATCGCTCTGGCGGAGATCGTGGTGGCGGCGGAGGTGATG
GAGCTCCTGGCAGCAGCAGCATGCGTTACAACGACATGGCGCCAACGCAT
TGGGACCACGAGCCACCACGATACCACAATCCCCCAGCTGCGCCGCCATC
ATCGGAGTACGAGCGTCCGCCGCCCTACTACTATCCGGGTGCCTCCGAGC
AGGATGCAAGCTTTCTAGACCAT

BO26393.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
prominin-like-RE 3042 CG7740-PE 1..3039 17..3055 15195 100 Plus
prominin-like-RA 3042 CG7740-PA 1..3039 17..3055 15195 100 Plus
prominin-like-RC 3042 CG7740-PC 1..3039 17..3055 15195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
prominin-like-RE 3491 CG7740-RE 277..3316 16..3055 15200 100 Plus
prominin-like-RA 4106 CG7740-RA 479..3518 16..3055 15200 100 Plus
prominin-like-RC 3828 CG7740-RC 201..3240 16..3055 15200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3118034..3118979 2572..1627 4730 100 Minus
3L 28110227 3L 3120666..3121071 421..16 2030 100 Minus
3L 28110227 3L 3119210..3119548 1519..1181 1695 100 Minus
3L 28110227 3L 3120027..3120214 884..697 940 100 Minus
3L 28110227 3L 3117082..3117256 2947..2773 875 100 Minus
3L 28110227 3L 3119798..3119963 1050..885 830 100 Minus
3L 28110227 3L 3120459..3120607 567..419 745 100 Minus
3L 28110227 3L 3117834..3117973 2712..2573 700 100 Minus
3L 28110227 3L 3119604..3119735 1180..1049 660 100 Minus
3L 28110227 3L 3120272..3120400 696..568 645 100 Minus
3L 28110227 3L 3119043..3119153 1626..1516 555 100 Minus
3L 28110227 3L 3115923..3116031 3055..2947 545 100 Minus
3L 28110227 3L 3117346..3117406 2772..2712 305 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:36:53 has no hits.

BO26393.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-23 19:04:27 Download gff for BO26393.complete
Subject Subject Range Query Range Percent Splice Strand
prominin-like-RA 480..3518 17..3057 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:37 Download gff for BO26393.complete
Subject Subject Range Query Range Percent Splice Strand
prominin-like-RC 202..3240 17..3057 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:52 Download gff for BO26393.complete
Subject Subject Range Query Range Percent Splice Strand
prominin-like-RC 202..3240 17..3057 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:52 Download gff for BO26393.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3120027..3120214 697..884 100 <- Minus
3L 3120272..3120400 568..696 100 <- Minus
3L 3120459..3120606 420..567 100 <- Minus
3L 3115921..3116031 2947..3057 98 <- Minus
3L 3117083..3117256 2773..2946 100 <- Minus
3L 3117346..3117405 2713..2772 100 <- Minus
3L 3117834..3117973 2573..2712 100 <- Minus
3L 3118034..3118979 1627..2572 100 <- Minus
3L 3119043..3119152 1517..1626 100 <- Minus
3L 3119213..3119548 1181..1516 100 <- Minus
3L 3119604..3119734 1050..1180 100 <- Minus
3L 3119799..3119963 885..1049 100 <- Minus
3L 3120668..3121070 17..419 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:37 Download gff for BO26393.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3115921..3116031 2947..3057 98 <- Minus
arm_3L 3117083..3117256 2773..2946 100 <- Minus
arm_3L 3117346..3117405 2713..2772 100 <- Minus
arm_3L 3117834..3117973 2573..2712 100 <- Minus
arm_3L 3118034..3118979 1627..2572 100 <- Minus
arm_3L 3119043..3119152 1517..1626 100 <- Minus
arm_3L 3119213..3119548 1181..1516 100 <- Minus
arm_3L 3119604..3119734 1050..1180 100 <- Minus
arm_3L 3119799..3119963 885..1049 100 <- Minus
arm_3L 3120027..3120214 697..884 100 <- Minus
arm_3L 3120272..3120400 568..696 100 <- Minus
arm_3L 3120459..3120606 420..567 100 <- Minus
arm_3L 3120668..3121070 17..419 100   Minus

BO26393.pep Sequence

Translation from 16 to 3073

> BO26393.pep
MGEVAATVEPLAAVKSKSMRSRKRRQRRRRQIAYLAICGLSVAIFGFALA
TLIRPTTAQADADPGSWRKGYVGHGTTHEQLGQPHWPPVQYTVYRPTTNY
TKAPPPPTSAMNPIFNFTHFLYDKVLYRDEPIPEGYIVVKNSDTLSLGPK
VEENDWRDLLAHYWMVLIWVVILVVLIIVIPFIAVCYCCFCCCRRCRQGC
PPCTSKQDAQRRFCCGICLLILIIGLIFGIIIAFVTNKMIDSGFAETSET
MKRGSEDTCTYLKDVADHVHHLMMYNYEEMETHVLDQLTHAHRHIFLDLS
DTSESNSLAEMERVLENMPEALELMRQVEKMEKDLRFYGSQLRDGVRGIK
RDVNFAVANLCQLQMCQKFLISSNIEHIDSSQCLHFDNLPNTKEFVEGME
NIVASEYYAIPQRGLSRLKKVSDKVKTQLSFVVPPMMRDLTKGRTIFREH
ATNVRNIVEGVLSDIHIKTLHSTKSFEDVYERFGHDRNVVSLIVCLLILL
VLFILIFALLCGCFGRRRTGYGDECCSKSTGATCLLLAILLIFCVFSFIA
LVGLFYFMLGMVTYQGACAPLRDQENNTLFRQLDASIDLNHYLPPSESNK
EVVQPLKMSSAIKACHANQTIFDMMRQHNIYDINDLTRIKVMSHSQENTD
SIKVFDEDLSTVVLLTKEERDELKTAGESKLAKYHSSLYMPSLCTQFTPM
NLNALSEQLYKLSNDLEYPAYGWAKVSFWNEGLNTKAFYRNFVPKLTSLV
EKMKANLKKIDELISYENHDFTNTIKILTATAINSEQFIQTRGKDYINAL
GGNLTNSIDQMIDDYIDMIIKEANESVGHCAPLSYIYYRGVDLICHRIVD
PINGFWVGILLCALLFLPILFVAHRLMCLYKKIYPYLATVGAAGVVEGGS
DYLYDAYSERDREHVPLANVPKKRRKAYERRREQQDYFEDASPSVSRGNR
SGGDRGGGGGDGAPGSSSMRYNDMAPTHWDHEPPRYHNPPAAPPSSEYER
PPPYYYPGASEQDASFLDH

BO26393.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
prominin-like-PE 1013 CG7740-PE 1..1013 1..1013 5373 100 Plus
prominin-like-PA 1013 CG7740-PA 1..1013 1..1013 5373 100 Plus
prominin-like-PC 1013 CG7740-PC 1..1013 1..1013 5373 100 Plus
prominin-like-PB 1013 CG7740-PB 1..1013 1..1013 5373 100 Plus
prominin-like-PG 993 CG7740-PG 1..993 1..1013 5234 98 Plus