Clone BO26402 Report

Search the DGRC for BO26402

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:264
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG31274-RB
Protein status:BO26402.pep: Imported from assembly
Sequenced Size:874

Clone Sequence Records

BO26402.complete Sequence

874 bp assembled on 2010-07-01

GenBank Submission: KX799355

> BO26402.complete
GAAGTTATCAGTCGACATGTCTGGAACATCGACCTCTGAACGCTCCAACT
CCGAAGACAGCCCGTTGAATCCCTGCCTAACGGAGGTCCTCAGGAATTGT
GCCAACATTCAGTCGCTGGAGAGCTTGAACTACGAATATAACGACGTTTT
GCTGACCGAAGACAACGTGGGGAAGATGATTACGCCGAATCCGTATTCCT
TTAGTGGCAACATTTCCATCAGCAGTTGTCCAAGTGAAGATGTATCATTT
TCGGAAAGCATCCTAGAGGACAACGGACGCATTTCGCTGGCCTATGAGAA
CCTGAAGACAATTCCGCGGCGACTGGCCGACAAATTCGCAGCGCAGACCA
AGTTTCTCGATTTGAGTCACAATGATTTCCGAAACTTGAGATTTCTCTCC
TTTTTCGAGGATCTGGACACTTTAATCCTGGACCGCAACGTAAACCTGGA
CATAAACACTTTTCCTTATTTGCCGAGCTTAAGGATCTTGTGGATCAACA
ATTGCGATATAGCAAATATAACCGATTGGATACACCGCATCGAACGGCAC
TGTCCTGCGCTGGATCAGCTCTCTTGCATGGGGAATCCTGGCATCCGCAC
AGTTTTCGGGGGCCAAGGACCCCGCGAGTATATACTACAGGTGCTTCCCC
AGCTAAAATATCTCGATGGACTTCCAACCAGCAGGAATGCAGCTTATGCG
ACGCTGTCTTCCTCACAAGGACAGGGTCCGGACTCCACGAGCAATTCGGA
AAAGCCTCCACTCGCATCCGCATTCACTTTCAAGGACATCATCCGTCCAA
AGTATTCCAGAAAATCGCACAGCGGACGGATGTTTGGCAACGGCTCCTCC
ACAAACGCAAGCTTTCTAGACCAT

BO26402.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-RB 843 CG31274-PB 1..840 17..856 4200 100 Plus
MESK4-RB 843 CG31447-PB 1..840 17..856 4200 100 Plus
MESK4-RA 843 CG31447-PA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-RB 1399 CG31274-RB 122..961 17..856 4200 100 Plus
MESK4-RB 1488 CG31447-RB 112..951 17..856 4200 100 Plus
MESK4-RA 1390 CG31447-RA 112..951 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16989020..16989455 58..493 2180 100 Plus
3R 32079331 3R 16993232..16993667 58..493 2180 100 Plus
3R 32079331 3R 16989518..16989882 492..856 1825 100 Plus
3R 32079331 3R 16993730..16994094 492..856 1825 100 Plus
3R 32079331 3R 16988925..16988968 17..60 220 100 Plus
3R 32079331 3R 16993137..16993180 17..60 220 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:00:16 has no hits.

BO26402.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:12 Download gff for BO26402.complete
Subject Subject Range Query Range Percent Splice Strand
CG31274-RB 1..840 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:57 Download gff for BO26402.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 112..951 17..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:23 Download gff for BO26402.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 112..951 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:23 Download gff for BO26402.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16988925..16988968 17..60 100 -> Plus
3R 16989023..16989454 61..492 100 -> Plus
3R 16989519..16989882 493..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:57 Download gff for BO26402.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12814647..12814690 17..60 100 -> Plus
arm_3R 12814745..12815176 61..492 100 -> Plus
arm_3R 12815241..12815604 493..858 99   Plus

BO26402.pep Sequence

Translation from 16 to 874

> BO26402.pep
MSGTSTSERSNSEDSPLNPCLTEVLRNCANIQSLESLNYEYNDVLLTEDN
VGKMITPNPYSFSGNISISSCPSEDVSFSESILEDNGRISLAYENLKTIP
RRLADKFAAQTKFLDLSHNDFRNLRFLSFFEDLDTLILDRNVNLDINTFP
YLPSLRILWINNCDIANITDWIHRIERHCPALDQLSCMGNPGIRTVFGGQ
GPREYILQVLPQLKYLDGLPTSRNAAYATLSSSQGQGPDSTSNSEKPPLA
SAFTFKDIIRPKYSRKSHSGRMFGNGSSTNASFLDH

BO26402.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-PB 280 CG31274-PB 1..280 1..280 1466 100 Plus
MESK4-PB 280 CG31447-PB 1..280 1..280 1466 100 Plus
MESK4-PA 280 CG31447-PA 1..280 1..280 1466 100 Plus
CG31076-PB 182 CG31076-PB 7..153 85..217 162 32.4 Plus