BO26403.complete Sequence
4951 bp assembled on 2010-07-15
GenBank Submission: KX794844
> BO26403.complete
GAAGTTATCAGTCGACATGAAGCGCAGCCGGTGGAGCCACAGTGGCTCCT
CCACGGCTCGACTCCTGCTGATCGGAGTATTGTTCGCCAGCTGTTCCACC
GCCATCCTGGGTGCCCAGCGTCCCCCCATCAACTCCGCCGGAGGTCACGA
ACTGCGCGGAACCACCTTCATGCCGGCCCTGGAGTGCTACGATCCATACG
GCAGGCCACAGAAATGTCTGCCAGAATTTATCAATGCTGCCTATCAACTG
CAAATTGAGTCAACTAATACCTGTGGTGAGCAGAATGACAACCACTTCTG
CATACAAACCATGAACCAAAATCACAAAAACTGCGAATTTTGCAAATACA
ATGATCATAATCCATCCTTCTTGACGGATTTGCATGATCCGCAAAGTCCA
ACGTGGTGGCAATCGGAGACCATGTTCGAGGGCATTCAGCACCCGAACTA
TGTGAATCTGACTTTGCACCTTGGAAAATCCTATGACATCACCTACGTGC
GCATTCTCTTCCGCTCACCAAGACCCGAATCCTTTACGATTTACAAGAGG
ACCTCGGAGAGTGGACCCTGGATTCCCTACCAGTTCTACAGTGCCACCTG
TCGCGACACCTACTCCCTGCCAGATTCGCGAGCCATTCGCAAGGGTGAGG
GCGAGGCCCATGCTCTGTGTACCAGCGAATACAGTGATATCTCGCCGTTG
AGGGACGGTGAGATTGCCTTCTCCACGCTGGAGGGTCGTCCCAGTGGCAT
CAATTTTGAGCGCAGCGGAGAACTGCAGGAGTGGGTCACGGCCACGGATA
TCCGTATCACGCTGGACCGACTGAACACCTTCGGTGACGAACTCTTCGGT
GATTCCCAGGTGCTCAAGTCGTACTTCTATGCCATCAGTGACATTGCCGT
GGGTGCGCGTTGCAAGTGCAATGGACATGCCAGCAAGTGTGTACCGAGCA
CGGGAATGCATGGCGAGAGGACTCTGGTCTGCGAGTGCCGGCACAATACG
GATGGACCCGATTGCGATCGCTGTCTGCCACTCTACAACGACCTCAAGTG
GAAGAGATCCACCTCAACGGAGGTCAACGAGTGCAAAGCTTGCAACTGCA
ATGGATTGGCGGACAAGTGCTTCTTCGACGCGAATCTGTTCAATCGGACG
GGTCATGGAGGTCACTGCCTGGACTGCCGCGAGAATCGCGATGGACCCAA
CTGCGAACGCTGCAAGGAGAACTTCTATATGCGCGACGATGGCTACTGCG
TCAACTGCGCCTGCGATCCCGTTGGCTCCAGATCGCTGCAGTGCAACAGC
CACGGCAAGTGCCAGTGTAAGCCGGGTGTGACTGGCGACAAGTGCGACCG
CTGCGATAACAACTACTACCAATTCGGTCCCCATGGATGCCAGCAGTGCG
GATGCGACAGTGGGGGATCCCATCAGAATACACCCGCCTGCGATACCGAG
ACTGGAATCTGCTTCTGCAAGGAGAATGTGGAGGGCAGACGCTGCAATGA
ATGCAAGCCAGGCTTCTTCAATCTGGACAAGAACAATCGATTTGGTTGCA
CACCCTGCTTCTGCTATGGGCACACCTCCGAGTGCATGACTGCCCCAGGA
TACTCCATTGTTTCGGTCACCTCCAATTTTAACAAATTCAAGGAACGCTG
GACGGCCGCCGATTTGAATCAACGCGAGGTGGACATCAAGTACAACCAGT
ATAGCCGAAGCATTGGAACCACCGCTCAGGGAAATGAGCACGTCTACTTC
CAGGCACCGGATCGCTTCCTCGGCGATCAGCGTGCCTCCTACAACAGGGA
TCTGAAATTCAAGCTCCAGCTAGTTGGTCAGGTGGCCAATACCGGAGTGA
GTGACGTGATCTTGGAGGGTGCTGGCAGCCGCATCTCCCTGCCCATCTTC
GCCCAGGGCAATGGAATACCCGACCAGGGAGTTAAGGAGTATACCTTCCG
TCTGCATGAACATCATGATTACCAGTGGCAACCAAGCCAGTCGGCTCGTG
GATTCCTTTCGATTCTGTCCAATCTGACGGCCATTAAGATCAGGGCCACG
TACTCGGTGCAGGGTGAGGCCATCCTGGATGATGTCGAGCTGCAGACGGC
ACATCGTGGAGCCGCCGGCCACCCGGCCACCTGGATCGAGCAGTGTACCT
GTCCGGAGGGTTACCTGGGCCAGTTCTGTGAGTCCTGTGCTCCAGGCTAT
CGCCACAGTCCCGCTCGCGGCGGTCCCTTCATGCCCTGCATCCCCTGCGA
TTGCCATGGTCATGCGGACATCTGTGACTCGGAGACGGGCAGGTGCATTT
GCCAGCACAACACCCACGGCGATAACTGCGATCAGTGTGCCAAGGGATTC
TACGGAAATGCCCTGGGCGGAACTCCCAACGACTGCAAGCGTTGCCCCTG
TCCCAATGATGGTGCCTGCCTGCAGATCAACGAAGATACGGTCATCTGTA
CGGAGTGCCCGAAGGGTTACTTTGGTTCCCGTTGCGAGCAGTGTAGCGAT
GGCTTCTTCGGAGATCCCACGGGTCTCCTGGGTGAGGTGCAGACTTGTAA
GAGCTGTGACTGCAATGGCAACGTGGATCCCAATGCCGTGGGCAATTGCA
ACCGGACTACGGGCGAGTGCTTAAAGTGTATCCACAATACAGCCGGAGAG
CACTGTGATCAGTGTTTGTCCGGACACTTTGGTGATCCTCTGGCCTTGCC
TCATGGACGCTGTGATCGCTGCAGTTGCTACGAGGCTGGAACCGAGCAGG
ATGAACAGAGTATCACGCGATGTGACCAAGTCACTGGTCAGTGCCAGTGC
AAGCCGAATGTAATTGGAAGGGATTGCGGAGAGTGCCAGCCGGGCTATTT
CAACATCCGATCGGGCAATGGCTGCGAGAACTGCCTGTGCGATCCGGTGG
GCAGCTACAACTCCACCTGCGATCGCTACTCTGGCCAGTGTCACTGCCGA
CCAGGTGTAATGGGTCAGCGGTGCGATCAGTGCGAGAACTATTTCTACGG
ATTCTCCAGCGAGGGCTGCAAGCCATGCGAATGCGACGAGAGCGGCTCAA
AGGGATTCCAGTGCGACCAGAATGGTCAGTGTCCTTGCAATGATAACGTG
GAAGGACGTCGTTGCGATCGCTGCAAGGAGAACAAGTACGACAGGCATCG
GGGTTGCATCGATTGCCCCGATTGCTATAACCTCGTCCAAGATGCCGCCG
ATTTGCATCGTGCCAAGTTGTTCAATCTCAGTCAAACGCTGGACGAGATT
GCTCGCACGCCGGTGACCAATGACGATGAGTTCGAGGCCAAGTTGAAGGC
GGTGCAGGAGAAGGTGGCTGTCCTGGCCCAGGATGCACGCGATAATTCCG
GTGATGGTGGTCAAACATACGCAGAGGTCATCGATGATCTTCACAAGCAC
CTGGACAGCGTGAGAGAGCATCTGGTGAGCGCGGATAAGTTCCAGGCAGA
TGCCAATGGGGAGATCGACAGGGCGCGCCAGAACTATACCATTCTGGACC
AGATCACCGAGAACGCCAAGAAGGAACTGCAGCAGGCCCTCGACCTCCTG
AATGACGAAGGTGCTCAGGCTTTGGCCCGGGCCAAGGAGAAGTCTGTGGA
ATTTGGACAGCAATCGGAACAGATCTCGGACATCTCGCGGGAGGCTCGTG
CCCTGGCCGACAAACTGGAGTCGGAGGCCCAGTTCGATTTGAAGAACGCC
AAGGATGCCAAGGATGCGGTGGAGAAGGCCCATCAGCTGGCCAAGAGTGC
CATCGATTTGCAGCTAAAGATCGGCACCGAGCTCCGTTCGGAGGTTGGTC
TGGAGCTGAGTCATGTGAAACAATCCCTGGGCACCGTAGTGCAGACCTCC
AAGGAGGCTCTTCGCAAAGCCAACGAGGTCTACGATACAGCATTGACCCT
GCTCAATGATGTCAATCGTCAGACGCAACCGGAAATCGATATCAGTCAGT
TGAAGAAGGATGCAGTGGCCGCCAATGAACGAGCGGATGAGCTACTCAAG
CAGATAACTGAATTGTCCAACAGCAACGGCGAACTCTTTGCGGATTTCGA
AACGGAACAGGAACTGACGGAGGCGCTGCTTAAGAGAGCTGAACAGCAGC
AACTGGAGGACATCGAGCTGCTAGAGCGAGCCAAGGCTGCCCACGACAAG
GCTACCAAGGCAGTGGAACAGGGCGACAATACCCTAAAGGAGGCCAACAA
TACCTACGAGAAGTTGGCCGGCTTCCAGTCGGATGTCCAGCGCTCTTCTG
AGAGTGCGGAGAAAGCCCTGCAGACGGTGCCCAACATCGAGAAGGAGATT
CAGAATGCGGAAAGCCTGATCAGCCAGGCGGAGGAGGCTCTCGATGGAGC
CAATAAGAATGCCAACGAGGCCAAGAAGAATGCCCAGGAGGCGCAGCTGA
AGTATGCCGAACAGGCTTCCAAGGATGCTGAGCTGATCCGCCGCAAAGCC
AATGAGACCAAGGTGGCTGCCCGCAATCTGCGCGAAGAGGCCGACCAACT
GAATCATCGCGTGAAACTCACCGAAATGGACATCTTCAAGCTGGAGGAGA
GCTCGACCAAGGACGACAATCTGGTGGACGACGCCAAGCGAAAGGTGGGT
CAGGCCAAGGCCGATACCCAGGAGGCCCAGAAGCAGATCGAGAAGGCCAA
TGCCGACCTGACGGCCATCAAGGATGAGCTGGAGAATCTGAAGGACATCA
ACACGGGCGATTTGGATAGATTGGAGAATCGTTTGGCCACTGTGGAGGGT
GAGATCAATCGCGTCAACCTGACGGGACGCATCGAAAAGTACCGGGAACA
GCGCACCATTCAGAAGAATCTGATCGACAAGTACGATGCCGAGCTGAGGG
AGCTCAAGGATGAAGTCCAGAATATTGGACTTATTTCCAAGGCTCTCCCC
GATAGCTGCTTCAGTCGCAATCGCCTGGAACCCGCAAGCTTTCTAGACCA
T
BO26403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LanB2-RB | 4920 | CG3322-PB | 1..4917 | 17..4933 | 24585 | 100 | Plus |
| LanB2-RA | 4920 | CG3322-PA | 1..4917 | 17..4933 | 24585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LanB2-RB | 5857 | CG3322-RB | 347..5264 | 16..4933 | 24590 | 100 | Plus |
| LanB2-RA | 5762 | CG3322-RA | 252..5169 | 16..4933 | 24590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9619779..9622364 | 1501..4086 | 12930 | 100 | Plus |
| 3L | 28110227 | 3L | 9618169..9618784 | 473..1088 | 3080 | 100 | Plus |
| 3L | 28110227 | 3L | 9619299..9619712 | 1087..1500 | 2070 | 100 | Plus |
| 3L | 28110227 | 3L | 9622421..9622760 | 4085..4424 | 1700 | 100 | Plus |
| 3L | 28110227 | 3L | 9622815..9623117 | 4422..4724 | 1515 | 100 | Plus |
| 3L | 28110227 | 3L | 9623178..9623387 | 4724..4933 | 1050 | 100 | Plus |
| 3L | 28110227 | 3L | 9617246..9617441 | 16..211 | 980 | 100 | Plus |
| 3L | 28110227 | 3L | 9617777..9617912 | 210..345 | 680 | 100 | Plus |
| 3L | 28110227 | 3L | 9617976..9618104 | 346..474 | 645 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3487..3588 | 4523..4624 | 123 | 61.9 | Plus |
BO26403.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 12:26:10 Download gff for
BO26403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LanB2-RA | 248..5164 | 17..4935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:32 Download gff for
BO26403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LanB2-RA | 253..5169 | 17..4935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:12 Download gff for
BO26403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LanB2-RA | 253..5169 | 17..4935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:12 Download gff for
BO26403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9617247..9617441 | 17..211 | 100 | -> | Plus |
| 3L | 9617779..9617912 | 212..345 | 100 | -> | Plus |
| 3L | 9617976..9618103 | 346..473 | 100 | -> | Plus |
| 3L | 9618170..9618784 | 474..1088 | 100 | -> | Plus |
| 3L | 9619301..9619712 | 1089..1500 | 100 | -> | Plus |
| 3L | 9619779..9622364 | 1501..4086 | 100 | -> | Plus |
| 3L | 9622423..9622759 | 4087..4423 | 100 | -> | Plus |
| 3L | 9622817..9623117 | 4424..4724 | 100 | -> | Plus |
| 3L | 9623179..9623387 | 4725..4935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:32 Download gff for
BO26403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9610879..9611012 | 212..345 | 100 | -> | Plus |
| arm_3L | 9611076..9611203 | 346..473 | 100 | -> | Plus |
| arm_3L | 9610347..9610541 | 17..211 | 100 | -> | Plus |
| arm_3L | 9611270..9611884 | 474..1088 | 100 | -> | Plus |
| arm_3L | 9612401..9612812 | 1089..1500 | 100 | -> | Plus |
| arm_3L | 9612879..9615464 | 1501..4086 | 100 | -> | Plus |
| arm_3L | 9615523..9615859 | 4087..4423 | 100 | -> | Plus |
| arm_3L | 9615917..9616217 | 4424..4724 | 100 | -> | Plus |
| arm_3L | 9616279..9616487 | 4725..4935 | 99 | | Plus |
BO26403.pep Sequence
Translation from 16 to 4951
> BO26403.pep
MKRSRWSHSGSSTARLLLIGVLFASCSTAILGAQRPPINSAGGHELRGTT
FMPALECYDPYGRPQKCLPEFINAAYQLQIESTNTCGEQNDNHFCIQTMN
QNHKNCEFCKYNDHNPSFLTDLHDPQSPTWWQSETMFEGIQHPNYVNLTL
HLGKSYDITYVRILFRSPRPESFTIYKRTSESGPWIPYQFYSATCRDTYS
LPDSRAIRKGEGEAHALCTSEYSDISPLRDGEIAFSTLEGRPSGINFERS
GELQEWVTATDIRITLDRLNTFGDELFGDSQVLKSYFYAISDIAVGARCK
CNGHASKCVPSTGMHGERTLVCECRHNTDGPDCDRCLPLYNDLKWKRSTS
TEVNECKACNCNGLADKCFFDANLFNRTGHGGHCLDCRENRDGPNCERCK
ENFYMRDDGYCVNCACDPVGSRSLQCNSHGKCQCKPGVTGDKCDRCDNNY
YQFGPHGCQQCGCDSGGSHQNTPACDTETGICFCKENVEGRRCNECKPGF
FNLDKNNRFGCTPCFCYGHTSECMTAPGYSIVSVTSNFNKFKERWTAADL
NQREVDIKYNQYSRSIGTTAQGNEHVYFQAPDRFLGDQRASYNRDLKFKL
QLVGQVANTGVSDVILEGAGSRISLPIFAQGNGIPDQGVKEYTFRLHEHH
DYQWQPSQSARGFLSILSNLTAIKIRATYSVQGEAILDDVELQTAHRGAA
GHPATWIEQCTCPEGYLGQFCESCAPGYRHSPARGGPFMPCIPCDCHGHA
DICDSETGRCICQHNTHGDNCDQCAKGFYGNALGGTPNDCKRCPCPNDGA
CLQINEDTVICTECPKGYFGSRCEQCSDGFFGDPTGLLGEVQTCKSCDCN
GNVDPNAVGNCNRTTGECLKCIHNTAGEHCDQCLSGHFGDPLALPHGRCD
RCSCYEAGTEQDEQSITRCDQVTGQCQCKPNVIGRDCGECQPGYFNIRSG
NGCENCLCDPVGSYNSTCDRYSGQCHCRPGVMGQRCDQCENYFYGFSSEG
CKPCECDESGSKGFQCDQNGQCPCNDNVEGRRCDRCKENKYDRHRGCIDC
PDCYNLVQDAADLHRAKLFNLSQTLDEIARTPVTNDDEFEAKLKAVQEKV
AVLAQDARDNSGDGGQTYAEVIDDLHKHLDSVREHLVSADKFQADANGEI
DRARQNYTILDQITENAKKELQQALDLLNDEGAQALARAKEKSVEFGQQS
EQISDISREARALADKLESEAQFDLKNAKDAKDAVEKAHQLAKSAIDLQL
KIGTELRSEVGLELSHVKQSLGTVVQTSKEALRKANEVYDTALTLLNDVN
RQTQPEIDISQLKKDAVAANERADELLKQITELSNSNGELFADFETEQEL
TEALLKRAEQQQLEDIELLERAKAAHDKATKAVEQGDNTLKEANNTYEKL
AGFQSDVQRSSESAEKALQTVPNIEKEIQNAESLISQAEEALDGANKNAN
EAKKNAQEAQLKYAEQASKDAELIRRKANETKVAARNLREEADQLNHRVK
LTEMDIFKLEESSTKDDNLVDDAKRKVGQAKADTQEAQKQIEKANADLTA
IKDELENLKDINTGDLDRLENRLATVEGEINRVNLTGRIEKYREQRTIQK
NLIDKYDAELRELKDEVQNIGLISKALPDSCFSRNRLEPASFLDH
BO26403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LanB2-PB | 1639 | CG3322-PB | 1..1639 | 1..1639 | 8915 | 100 | Plus |
| LanB2-PA | 1639 | CG3322-PA | 1..1639 | 1..1639 | 8915 | 100 | Plus |
| wb-PG | 3001 | CG42677-PG | 155..1199 | 69..1050 | 1396 | 31.6 | Plus |
| wb-PB | 3375 | CG15288-PB | 155..1199 | 69..1050 | 1396 | 31.6 | Plus |
| LanA-PA | 3712 | CG10236-PA | 1359..2657 | 284..1620 | 1293 | 28.1 | Plus |
| wb-PG | 3001 | CG42677-PG | 1199..1806 | 299..883 | 596 | 29.7 | Plus |
| wb-PB | 3375 | CG15288-PB | 1199..1806 | 299..883 | 596 | 29.7 | Plus |
| wb-PG | 3001 | CG42677-PG | 977..1395 | 700..1050 | 487 | 29.1 | Plus |
| wb-PB | 3375 | CG15288-PB | 977..1395 | 700..1050 | 487 | 29.1 | Plus |
| wb-PG | 3001 | CG42677-PG | 1084..1407 | 709..1019 | 364 | 29.9 | Plus |
| wb-PB | 3375 | CG15288-PB | 1084..1407 | 709..1019 | 364 | 29.9 | Plus |
| wb-PG | 3001 | CG42677-PG | 1629..2390 | 813..1558 | 361 | 22.6 | Plus |
| wb-PB | 3375 | CG15288-PB | 1629..2390 | 813..1558 | 361 | 22.6 | Plus |
| wb-PG | 3001 | CG42677-PG | 391..624 | 838..1077 | 276 | 31.3 | Plus |
| wb-PB | 3375 | CG15288-PB | 391..624 | 838..1077 | 276 | 31.3 | Plus |
| wb-PG | 3001 | CG42677-PG | 1205..1410 | 698..917 | 267 | 30.8 | Plus |
| wb-PB | 3375 | CG15288-PB | 1205..1410 | 698..917 | 267 | 30.8 | Plus |
| wb-PG | 3001 | CG42677-PG | 1065..1296 | 299..516 | 261 | 28.1 | Plus |
| wb-PB | 3375 | CG15288-PB | 1065..1296 | 299..516 | 261 | 28.1 | Plus |
| wb-PG | 3001 | CG42677-PG | 1617..1821 | 311..514 | 258 | 30.6 | Plus |
| wb-PB | 3375 | CG15288-PB | 1617..1821 | 311..514 | 258 | 30.6 | Plus |
| wb-PG | 3001 | CG42677-PG | 1664..1821 | 293..461 | 195 | 30.7 | Plus |
| wb-PB | 3375 | CG15288-PB | 1664..1821 | 293..461 | 195 | 30.7 | Plus |
