BO26423.complete Sequence
2494 bp assembled on 2010-07-15
GenBank Submission: KX798473
> BO26423.complete
GAAGTTATCAGTCGACATGGCCATCAACTTTTCGGCTTCCTTTGCGGCTT
GCATAGCAGCCGGGCTAAAGGTGCCGCGCCAGATAATGTACTGCATCACT
CAGGACACGGGCCAGCCATACGTGCTCTATAAGGACTCGCAGGACGCTGA
ACGGAACCCCGGTGCCATAGGTGCCACTCCCGCCCAGTGGGGCAGCGAGA
TGTACCCCAACATCCAGCAACAGGCCCAGCAGCACCTAACTGCCCAGCAG
CAGCAACAGCAGCAGCAGCAGAACGCGGCGCAAGCAGCGGCCCAGGCGGC
AGCTGTGGCAGCGGCAGCGGGACAGCCGCAAAGTCCGCCGGGTGGCGGAC
AGGAGGCCCGCGACAACGGCAGCGGTGATGGCCGCCAGCAGCAGGTGTCG
CCCTCCTCGAGTCCGTACCCTTCGGTCCAGCAGCAGCAGAGGGCAAACGG
GGCAGGCGACGAGGACCCCATGAACCACCAGCTCGCCAACCAGCAGAACC
CCGCTCCCAATCAAAACCAAAGCAGCAATGACCCCCAGCATTCGGGCTCC
AACGCGGGCGAATCAGGCAACCCGCATGTCCAGCAGAACGGCGGACCGCA
AAATGACCCCGGCAACAGTTTTCGAACACCGGACTATTATGACCCCCGCC
ACGCGGCACCGCAAGGGGGGATGCTGGCACCGCCTGGCTTCCCACCGCTT
CACTATCTTAACAAGGGCGTTTTGCCAATGGAACAGTCTGGCGGCGGCGG
CGGGGCCGGGGGTGGAGAAGCCTACGCGCTTCCCGAAATGCTGCCGGCTC
AGCAAAACGGTCAGCAGAACGCCGGTCCAGCGAACACCAATGCCAACGAA
GGCGGTGCGGGAGCCAACGGGAGCGGAGGTGTAGGCGGTGCGACGGGAGC
GAGCGTGGGAGTGGGATCGGTGGGCGTGACGAGCGGCGGAAGGACGGGCA
ACGGACCAGGACGCCCGCACAAGAACAAGCCACACAGCGACCTGCGGCTC
TTCAAGTGCCTCACCTGCGGCAAGGACTTCAAGCAGAAGAGCACGTTGCT
GCAGCACGACCGCATCCACACGGACGCACGACCCTTCCCGTGCTCCGAGT
GCGGCAAACGCTTTCGCCAGCAGTCGCACCTTACACAGCATTTGCGCATC
CACGCCAACGAAAAGCCCTTCACCTGCCCATACTGCTCGCGCAGTTTTCG
GCAGCGCGCCATTCTCAACCAGCACATACGCATCCATTCGGGTGAGAAGC
CCTTCGCCTGCCCCGAGTGCGGCAAGCACTTTCGCCAGAAAGCCATCCTC
AATCAGCATGTGCGCACCCACCAAGACGTCTCGCCACACCTTATTTTCAA
AAACGGGCCGCACCCGACCCTGTGGCCCTCGGATGTACCCTTCCCTGGCG
AGGACAACGACACTAAGGGCGATATCGCCGGCACGGGCGGCGGCTACCAC
GACGAGGACTCCCAGGGAACGCCGGATGGCAGCGGTGGCATGCACTACCC
CTCTTACTTCAAGGACGGCAAGGGCCAAAAGATACTGCCCGAGGTGCTGC
AGCATATCGGCGTGAGACCGGCAAACATGCCGCTCTACGTGCGGTGCCCC
ATCTGCGACAAGGAGTTTAAGCAGAAGACGACGCTGTTGCAACACGGCTG
CATCCACATCGAGTCGCGGCCGTACCCCTGCCCGGAGTGCGGAAAACGTT
TCCGGCAGCAGTCGCATCTTACGCAGCACCTGCGCATTCACACTAACGAG
AAGCCCTTTGGCTGCATGTACTGTCCGCGATTCTTCCGCCAGCGGACAAT
CCTCAATCAGCACTTGCGTATCCACACCGGCGAGAAGCCGTACAAGTGTG
GTCAGTGCGGCAAGGACTTCCGTCAGAAGGCCATCCTGGACCAGCACACG
CGCACCCACCAGGGCGATCGTCCATTCTGTTGTCCTATGCCCAACTGTCG
TCGGCGCTTTGCTACGGAGAATGAGGTTACCAAGCACATCGACAACCACA
TGAACCCCAACACCACTAAGGTGCGCCGACAGCAACAGCAGCAGCACCAA
CAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGAA
TAACAACGCTGTCGCCCAGGTGGCCAATCACCTGATGAACGACGCCAAGA
GCCTGGCGGCCCAACAGTTCCTCAACAACAACAATCCCTCGGCAGTGGAC
AACAAGGCCAACATCCTTCCGGTGCGCAGTATAGCATCCAACGCTGCGGC
AGCCGCTGTTGTCCAGCAGTCCGTAGTAAAGAACGAGCTCTATTTTCCGC
AGTGCTACGGACCACCCTTCCAGCATCCCTTTCAGGCACAGCAGCAGCAG
GCCCAACAGCCCAGCGTGGCCCACGCAAACGGAGGACCCACTCCACCCGT
AACCGTAACGGTGGCCAACTCTGTGGCATCCGGCGTGGTGGTTCAGCAGA
ATGCTTCTGCCTCTGTGGTAGCCCAGGCAAGCTTTCTAGACCAT
BO26423.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jim-RH | 2463 | CG11352-PH | 1..2460 | 17..2476 | 12255 | 99.9 | Plus |
| jim-RF | 2817 | CG11352-PF | 1..2460 | 17..2476 | 12255 | 99.9 | Plus |
| jim-RD | 2463 | CG11352-PD | 1..2460 | 17..2476 | 12255 | 99.9 | Plus |
| jim-RH | 2463 | CG11352-PH | 1578..1895 | 1006..1323 | 390 | 74.8 | Plus |
| jim-RF | 2817 | CG11352-PF | 1578..1895 | 1006..1323 | 390 | 74.8 | Plus |
| jim-RH | 2463 | CG11352-PH | 990..1307 | 1594..1911 | 375 | 74.5 | Plus |
| jim-RF | 2817 | CG11352-PF | 990..1307 | 1594..1911 | 375 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jim-RH | 5620 | CG11352-RH | 1223..3682 | 17..2476 | 12255 | 99.9 | Plus |
| jim-RF | 6714 | CG11352-RF | 2317..4776 | 17..2476 | 12255 | 99.9 | Plus |
| jim-RD | 4749 | CG11352-RD | 352..2811 | 17..2476 | 12255 | 99.9 | Plus |
| jim-RH | 5620 | CG11352-RH | 2800..3117 | 1006..1323 | 390 | 74.8 | Plus |
| jim-RF | 6714 | CG11352-RF | 3894..4211 | 1006..1323 | 390 | 74.8 | Plus |
| jim-RH | 5620 | CG11352-RH | 2212..2529 | 1594..1911 | 375 | 74.5 | Plus |
| jim-RF | 6714 | CG11352-RF | 3306..3623 | 1594..1911 | 375 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22799941..22800787 | 1325..479 | 4220 | 99.9 | Minus |
| 3L | 28110227 | 3L | 22797915..22798488 | 2476..1903 | 2840 | 99.7 | Minus |
| 3L | 28110227 | 3L | 22800850..22801314 | 481..17 | 2310 | 99.8 | Minus |
| 3L | 28110227 | 3L | 22798801..22799191 | 1913..1523 | 1940 | 99.7 | Minus |
| 3L | 28110227 | 3L | 22799250..22799450 | 1524..1324 | 1005 | 100 | Minus |
| 3L | 28110227 | 3L | 22798803..22799120 | 1323..1006 | 390 | 74.8 | Minus |
| 3L | 28110227 | 3L | 22799937..22800260 | 1917..1594 | 390 | 74.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:09:00 has no hits.
BO26423.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:01:47 Download gff for
BO26423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jim-RD | 352..2811 | 17..2478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:42 Download gff for
BO26423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jim-RD | 352..2811 | 17..2478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:44:49 Download gff for
BO26423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jim-RD | 352..2811 | 17..2478 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:44:49 Download gff for
BO26423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22799251..22799448 | 1326..1523 | 100 | <- | Minus |
| 3L | 22797911..22798478 | 1913..2478 | 99 | <- | Minus |
| 3L | 22798802..22799190 | 1524..1912 | 99 | <- | Minus |
| 3L | 22799941..22800784 | 482..1325 | 99 | <- | Minus |
| 3L | 22800850..22801314 | 17..481 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:42 Download gff for
BO26423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22791011..22791578 | 1913..2478 | 99 | <- | Minus |
| arm_3L | 22791902..22792290 | 1524..1912 | 99 | <- | Minus |
| arm_3L | 22792351..22792548 | 1326..1523 | 100 | <- | Minus |
| arm_3L | 22793041..22793884 | 482..1325 | 99 | <- | Minus |
| arm_3L | 22793950..22794414 | 17..481 | 99 | | Minus |
BO26423.pep Sequence
Translation from 16 to 2494
> BO26423.pep
MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYVLYKDSQDAERNPGA
IGATPAQWGSEMYPNIQQQAQQHLTAQQQQQQQQQNAAQAAAQAAAVAAA
AGQPQSPPGGGQEARDNGSGDGRQQQVSPSSSPYPSVQQQQRANGAGDED
PMNHQLANQQNPAPNQNQSSNDPQHSGSNAGESGNPHVQQNGGPQNDPGN
SFRTPDYYDPRHAAPQGGMLAPPGFPPLHYLNKGVLPMEQSGGGGGAGGG
EAYALPEMLPAQQNGQQNAGPANTNANEGGAGANGSGGVGGATGASVGVG
SVGVTSGGRTGNGPGRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRI
HTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAIL
NQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHP
TLWPSDVPFPGEDNDTKGDIAGTGGGYHDEDSQGTPDGSGGMHYPSYFKD
GKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIES
RPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHL
RIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFAT
ENEVTKHIDNHMNPNTTKVRRQQQQQHQQQQQQQQQQQQQQQQQNNNAVA
QVANHLMNDAKSLAAQQFLNNNNPSAVDNKANILPVRSIASNAAAAAVVQ
QSVVKNELYFPQCYGPPFQHPFQAQQQQAQQPSVAHANGGPTPPVTVTVA
NSVASGVVVQQNASASVVAQASFLDH
BO26423.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jim-PH | 820 | CG11352-PH | 1..820 | 1..820 | 4467 | 100 | Plus |
| jim-PF | 938 | CG11352-PF | 1..820 | 1..820 | 4467 | 100 | Plus |
| jim-PD | 820 | CG11352-PD | 1..820 | 1..820 | 4467 | 100 | Plus |
| jim-PC | 820 | CG11352-PC | 1..820 | 1..820 | 4467 | 100 | Plus |
| jim-PE | 825 | CG11352-PE | 1..825 | 1..820 | 4440 | 99.4 | Plus |
