BO26426.complete Sequence
4243 bp assembled on 2010-07-15
GenBank Submission: KX798874
> BO26426.complete
GAAGTTATCAGTCGACATGAATGCGTTCCAGGACTTTGAGCTGGGGGCCA
AACTATATCTGCAGTGCTTATTATCGCTGAGCAGCTCCCGATCTGCCACG
CCATCCTACACCTCACCTGTTAACCACGCTGGAGCTTCTCCTCTGAATGC
CATTGCCCATTCGCCGGTGAATGTGTCCGCCACTCATAGGCAGAACTTTT
TCACACCCATTGCCAACCAGTCGCAGCAGCAACAGCAGCAACAGCCTGTG
GCGGTACCGCTCGACTCCAAGTGGAAAACAACACCCAGTCCGGTGCTCTA
CAATGCCAACAACAACAGCAGCAATAACAACACCAGCAGCAGCAACAACA
ACAACAACAGTAACTGGGAGGTGGGCAGCAATAGCAATACTCATGTTGCA
GCTACGGCAGCAGCAACATCAACAGTTGGCGCTCAACCACTGCCGCCGCA
AACGACACCCGTTTCGCTGGTGATGCACGCCCCACCGCCGCAGCAGCAAC
CACTGCAGCAGCAGCACCACCATCACCAACCGCCTCCACCGCCACCTGCT
AGTTTGCCAGCGCCATCGGCACCACCCACCAGCGGCAGCAGCAGCAGCCA
CAACAGCGTGGGCCATGCCACCAGCGTTATACGCATTTCGAGCAGCCAAC
AGCAACATCAGCAGCAGCAACAGCACCAACAGCAGGCACATCCACATGTG
GTGGTGAGCGGCGGACAGACTTTTCATCCCGTAATCGTGGACGCTACTCA
GCTATCGGTGCCGCTGCCACCCACAACGGTTTCATTTCATCAGCCCAACA
CGCCCACCTCAACAGCGGCATCAGTGGCTTCAATGAGCCAGGACAAGATG
CTGGCAAAAAACGGCTACAATGCGCCCTGGTTCAAGCTGTTGCCGCATAT
GACGCCAATGAGCAAGGCGTCGCCAGCTCCGGTCACTCCGACCCTAACCA
CATCGGCCAGCAGTTACAACGTGGTGATGATGCAACAGCAGCAGCAGCAT
CAGCAGCTTCAACAACAGCAGCAACTGCAGCAGCAGCAACAGTCGCCACC
CCAGATGCCGCTGAACCACAACAACAATCATCTGATTGTGTCCGCCCCAC
TAAGCTCCCCGGGCAAGCCACTCAACTGCTCAATGAACGATGCCAAGGTG
GCGGCGGCAGCAGCAGCGGCCGCAGTTGCCAACCAGAGGCAAAAGCAGCA
GCAGGAGGAGCCGGACGATCAGCTGGACGATGATGTGTTTGAGACCACAA
CGCCCGGTATCAGCGCCAACAGCAAAAAACAAACTGCGGCAATGCGGCTG
CCCACCCACAACAGTAACATACGAAAGCTGGAGGAATGCCATGATGATGG
AGCTGCAGGTGCACCAGCCACTTCGGCTGCCAAGCGGAGGAGTCAATCGT
TGAGCGCCCTGCAGCAACAGCAGCAGCAGCAACAGCAGGCCGGTGCGGCA
GGAACAGCAGCTGGGCAGCCGGCGAACAAGAAAATCCGAAGACCCATGAA
CGCTTTTATGATCTTCTCAAAGAAACATCGGAAAATGGTGCACAAGAAGC
ATCCGAATCAGGACAACCGTACGGTCAGCAAGATTCTGGGCGAGTGGTGG
TACGCCCTGAAGCCAGAGCAAAAGGCTCAGTACCACGAGCTGGCCAGCTC
TGTTAAGGATGCACACTTCAAGCTGCATCCGGAGTGGAAGTGGTGCTCCA
AAGATCGCCGCAAGTCATCCACCTCGACAGCAACGCCTGGTGGAAAGGCG
AGCGGAGCGGCCGGAACAGGTGACGCTAAGCAGCGCCTGGTATCGGTGGA
TGGCTCCGATTCCTTGGAGCACGATATGTGCCCCTCAACGCCAGGAGGCA
GCGGCAGCTGCGGTGGCCAGGGCATATCATCCGATTTGCAGGGCGATATT
ATACCGCTGACAATTGACAACTACAATAGCACCTGTGATGAGGCGCCAAC
TACGATCTCGATGAAGGGCAATGGCAACGGAAAGCTGATGAAGAACGAGC
TGCCATCGGACGAGGACGAACAGATGCTGGTAGTGGAGGAGGAGCAGCAA
CAGCAGACCGTAAAGAAGATTGACCTGCACTGCCGCGAGCGGGTGAATGA
CTCGGACATGGACGACACACCCTTTGACTACCGCAAGCAGCAGCCAGAGG
CAAATCAGCGTTCGGCAGAGGAGCACAGTACATCCGGTGCGAATGGCCAG
GCCATAAACGCACCGCCGCTCAGCGGAGGAGAGCGCGAGATCACACTCAA
ACCGAAGGCTATCAAAGCACATCCGGTGCTGGAGAGCAACATGCTGCCAT
ATACCCAGATGTCCATCTACACGCAGTACACTAGTCCCAAGAACCCAATC
GGTGTAACACCATTCCAACCCACAGGCGGCGCCTTCAAATCGATGCCCAT
CAGCCCCAAGGGCAGCGGTGGCAAGCCGGAGGACGCTGGCTCCCTGCAGG
CACACATCAAGCAGGAGGACATCAAACAGGAACCGCCATCGCCATACAAG
CTGAACAATGGTTCGGGATCCGCCTCCGGAGGGGGCGTGGTCAGTGCTCC
GCCGCCGAATAGTGGTAGCGTTGGTGCCATATTCAACTTCAATGTGCCAA
CGGCGACGGCTTTGAGTCAGAAGCAGTTTCACTACCCGATGCATCATCCT
CATCGCAGTCCCACAGATCTTAGAGCTGCCCACCAGGCGTGTGTGCCATC
GTCGCCAGCGGGCATGGGACTGGGGCATGCGGCCAACATTGCCACGCCTC
CAGCATCGGCGCCGGCCCAGATCATGGGAGGCGGTCCAGCCAGTCAGAAG
ATGTTCTTCGCCATGACTCATCCGTATACGTTGCTGCAGCGCTCCCACCA
ACCGGGCACCCCCAGCCTAGAGCACTTGCAGCTGGACGCTTTTGCGCCAG
GAGGTTACACCTTGAGGAACCACAATGGCCTGTCTTCCCTGCCACCGCCC
GTGAGTGCGCAACCCACGATGCTGCTGCACGGATACCCGCCCAGCCATGG
TGTCGAACCACCGGCTAGATCGCCATCGTACAAATCAATGCCATCTACTC
CAAAGTCGGCCACATATCTCATGAGTGCGCCACCGGAGCGAGGCATGGAT
GGAGGAATGAGTGGATGTGCATCAGCAGCGGCAAGCGGAGGCGATGAAAG
CGACATAGATGCGGATGGCCAGCAGTTTATTTTGGCACCCACGCCTGCGC
AGTTGGGTCGAGCTCCACTGCAGAGGAGGAAGAATCTATCTCAAAGCAAG
TCAGAGAGCAATGTGTCCTTTGGCGCTAATCTGGGGGCCAGCAATGGACA
GCACATTAGTCGCAAGCTGCACTCACCCACAATGATGGAATCCTCATCGC
CCATCATAGGCCACGTGAACAGCAGCAACCTCAGCTCGGCCCTGCCAACG
CCCACGTCCTCGACGACGACACCAAACAGTGATGAGCAACTGCCACTGAC
GCCGACAACCAGCAGCAGCAACAGTAACTTAAATCAGCAGCAGCCCAAGT
CACCGATGAAAGGTGCTCCAGGATCAACGGCAGCGGCCCTAAAAAAGAAG
AACGATGAGATGAATAACAGTGTGCTCAAGCAGGTAGATTTCGAAAAGAA
ATACAAGGCCCTGCCGCAGTTCCAGCCTGAGGATTGCCAGTCGCCCAGTG
CCATTGCTGTGCCCTCATCGCCACGCGTTTACGGCACGAATTACCGCAAG
AAGAACACGGCTCCACCGCCAGTTCAGAAGCTAATGTGCGAGGACGACTC
CATTGACGAACCAGCATCGGCACCGCCTACGACCACACAGCGATTCTTTG
GTCCGGACTTTAACAATGAGCTAAAGGAACTGGAGAGCTCTGACCAAACG
GGCCGCTCACCCAGGACGCCAAAGACACCGCTACAAAGCGCTCGGTCCGA
TGCCAGTGAGAAAGGACACCGCAAGGTCCTGGAGACGCGTCGCAGCCTGG
TCTTGCAGTTGTTTGCCGAGCACGGTAACTTCCCCACTGCCCAGGCCACT
ATGGCCTTTCAGTCTAAGCACAGCGATGTCTTTCCGCGCAAGCAAGATCT
GCAGCTGAAGATACGAGAGGTGCGCCAGAAGCTGCTGGGCCAAGCATCTT
GCACTCCACACTCGGCGGGCCCCAACACGCCGTCCGACTCCAACTCGTCG
TCGACCACATTGAGTGCCAGTAGCACCAGCTTGAATATGCAGACCACCAG
TGCGGCAGATGTTTTTCAATATTACGCAAGCTTTCTAGACCAT
BO26426.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cic-RA | 4212 | CG43122-PA | 1..4209 | 17..4225 | 21045 | 100 | Plus |
| cic-RD | 6426 | CG43122-PD | 2270..6423 | 72..4225 | 20770 | 100 | Plus |
| cic-RC | 4284 | CG43122-PC | 1..4204 | 17..4208 | 20695 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cic-RA | 5167 | CG43122-RA | 205..4414 | 16..4225 | 21050 | 100 | Plus |
| cic-RD | 7259 | CG43122-RD | 2776..6929 | 72..4225 | 20770 | 100 | Plus |
| cic-RC | 5152 | CG43122-RC | 205..4409 | 16..4208 | 20700 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20294553..20295848 | 863..2158 | 6480 | 100 | Plus |
| 3R | 32079331 | 3R | 20293602..20294394 | 72..864 | 3965 | 100 | Plus |
| 3R | 32079331 | 3R | 20298595..20299010 | 2824..3239 | 2080 | 100 | Plus |
| 3R | 32079331 | 3R | 20299081..20299408 | 3240..3567 | 1640 | 100 | Plus |
| 3R | 32079331 | 3R | 20296198..20296499 | 2374..2675 | 1510 | 100 | Plus |
| 3R | 32079331 | 3R | 20295906..20296128 | 2156..2378 | 1115 | 100 | Plus |
| 3R | 32079331 | 3R | 20300214..20300412 | 4010..4208 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 20299967..20300152 | 3827..4012 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 20299465..20299631 | 3568..3734 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 20298382..20298532 | 2674..2824 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 20299701..20299793 | 3735..3827 | 465 | 100 | Plus |
| 3R | 32079331 | 3R | 20293448..20293503 | 16..71 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..3034 | 313..1071 | 465 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7079 | 307..674 | 425 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2896 | 475..1085 | 374 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7197 | 224..684 | 352 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2839 | 223..693 | 339 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2960 | 485..1077 | 313 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6421..6923 | 192..677 | 312 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2932 | 216..696 | 305 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..7033 | 399..685 | 289 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2640..3040 | 307..702 | 261 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2983 | 558..1203 | 244 | 54.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2631..3012 | 215..604 | 232 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6899 | 482..607 | 226 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6957 | 223..430 | 221 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2219..2520 | 298..607 | 209 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..7040 | 216..455 | 192 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6862..7199 | 207..545 | 167 | 55.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1175 | 481..605 | 144 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1581 | 491..533 | 134 | 79.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 886..999 | 494..607 | 119 | 61.9 | Plus |
BO26426.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 14:35:00 Download gff for
BO26426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cic-RA | 184..4392 | 17..4227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:10 Download gff for
BO26426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cic-RA | 206..4414 | 17..4227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:54:03 Download gff for
BO26426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cic-RA | 206..4414 | 17..4227 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:54:03 Download gff for
BO26426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20299968..20300152 | 3828..4012 | 100 | -> | Plus |
| 3R | 20300217..20300412 | 4013..4208 | 100 | -> | Plus |
| 3R | 20293449..20293503 | 17..71 | 100 | -> | Plus |
| 3R | 20293602..20294393 | 72..863 | 100 | -> | Plus |
| 3R | 20294554..20295848 | 864..2158 | 100 | -> | Plus |
| 3R | 20295909..20296125 | 2159..2375 | 100 | -> | Plus |
| 3R | 20296200..20296499 | 2376..2675 | 100 | -> | Plus |
| 3R | 20298384..20298532 | 2676..2824 | 100 | -> | Plus |
| 3R | 20298596..20299010 | 2825..3239 | 100 | -> | Plus |
| 3R | 20299081..20299408 | 3240..3567 | 100 | -> | Plus |
| 3R | 20299465..20299631 | 3568..3734 | 100 | -> | Plus |
| 3R | 20299701..20299793 | 3735..3827 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:10 Download gff for
BO26426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16125690..16125874 | 3828..4012 | 100 | -> | Plus |
| arm_3R | 16125939..16126134 | 4013..4208 | 100 | -> | Plus |
| arm_3R | 16119171..16119225 | 17..71 | 100 | -> | Plus |
| arm_3R | 16125187..16125353 | 3568..3734 | 100 | -> | Plus |
| arm_3R | 16125423..16125515 | 3735..3827 | 100 | -> | Plus |
| arm_3R | 16119324..16120115 | 72..863 | 100 | -> | Plus |
| arm_3R | 16120276..16121570 | 864..2158 | 100 | -> | Plus |
| arm_3R | 16121631..16121847 | 2159..2375 | 100 | -> | Plus |
| arm_3R | 16121922..16122221 | 2376..2675 | 100 | -> | Plus |
| arm_3R | 16124106..16124254 | 2676..2824 | 100 | -> | Plus |
| arm_3R | 16124318..16124732 | 2825..3239 | 100 | -> | Plus |
| arm_3R | 16124803..16125130 | 3240..3567 | 100 | -> | Plus |
BO26426.pep Sequence
Translation from 16 to 4243
> BO26426.pep
MNAFQDFELGAKLYLQCLLSLSSSRSATPSYTSPVNHAGASPLNAIAHSP
VNVSATHRQNFFTPIANQSQQQQQQQPVAVPLDSKWKTTPSPVLYNANNN
SSNNNTSSSNNNNNSNWEVGSNSNTHVAATAAATSTVGAQPLPPQTTPVS
LVMHAPPPQQQPLQQQHHHHQPPPPPPASLPAPSAPPTSGSSSSHNSVGH
ATSVIRISSSQQQHQQQQQHQQQAHPHVVVSGGQTFHPVIVDATQLSVPL
PPTTVSFHQPNTPTSTAASVASMSQDKMLAKNGYNAPWFKLLPHMTPMSK
ASPAPVTPTLTTSASSYNVVMMQQQQQHQQLQQQQQLQQQQQSPPQMPLN
HNNNHLIVSAPLSSPGKPLNCSMNDAKVAAAAAAAAVANQRQKQQQEEPD
DQLDDDVFETTTPGISANSKKQTAAMRLPTHNSNIRKLEECHDDGAAGAP
ATSAAKRRSQSLSALQQQQQQQQQAGAAGTAAGQPANKKIRRPMNAFMIF
SKKHRKMVHKKHPNQDNRTVSKILGEWWYALKPEQKAQYHELASSVKDAH
FKLHPEWKWCSKDRRKSSTSTATPGGKASGAAGTGDAKQRLVSVDGSDSL
EHDMCPSTPGGSGSCGGQGISSDLQGDIIPLTIDNYNSTCDEAPTTISMK
GNGNGKLMKNELPSDEDEQMLVVEEEQQQQTVKKIDLHCRERVNDSDMDD
TPFDYRKQQPEANQRSAEEHSTSGANGQAINAPPLSGGEREITLKPKAIK
AHPVLESNMLPYTQMSIYTQYTSPKNPIGVTPFQPTGGAFKSMPISPKGS
GGKPEDAGSLQAHIKQEDIKQEPPSPYKLNNGSGSASGGGVVSAPPPNSG
SVGAIFNFNVPTATALSQKQFHYPMHHPHRSPTDLRAAHQACVPSSPAGM
GLGHAANIATPPASAPAQIMGGGPASQKMFFAMTHPYTLLQRSHQPGTPS
LEHLQLDAFAPGGYTLRNHNGLSSLPPPVSAQPTMLLHGYPPSHGVEPPA
RSPSYKSMPSTPKSATYLMSAPPERGMDGGMSGCASAAASGGDESDIDAD
GQQFILAPTPAQLGRAPLQRRKNLSQSKSESNVSFGANLGASNGQHISRK
LHSPTMMESSSPIIGHVNSSNLSSALPTPTSSTTTPNSDEQLPLTPTTSS
SNSNLNQQQPKSPMKGAPGSTAAALKKKNDEMNNSVLKQVDFEKKYKALP
QFQPEDCQSPSAIAVPSSPRVYGTNYRKKNTAPPPVQKLMCEDDSIDEPA
SAPPTTTQRFFGPDFNNELKELESSDQTGRSPRTPKTPLQSARSDASEKG
HRKVLETRRSLVLQLFAEHGNFPTAQATMAFQSKHSDVFPRKQDLQLKIR
EVRQKLLGQASCTPHSAGPNTPSDSNSSSTTLSASSTSLNMQTTSAADVF
QYYASFLDH
BO26426.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cic-PA | 1403 | CG5067-PA | 1..1403 | 1..1403 | 7357 | 100 | Plus |
| cic-PC | 1427 | CG43122-PC | 1..1401 | 1..1397 | 7290 | 99.6 | Plus |
| cic-PD | 2141 | CG43122-PD | 756..2141 | 18..1403 | 7263 | 99.9 | Plus |
| cic-PG | 2150 | CG43122-PG | 760..2150 | 18..1403 | 7247 | 99.6 | Plus |
| cic-PH | 1275 | CG43122-PH | 1..1249 | 153..1397 | 6503 | 99.5 | Plus |
