BO26427.complete Sequence
2080 bp assembled on 2010-07-15
> BO26427.complete
GAAGTTATCAGTCGACATGCACCGAATACCATTGTATATGGGGTCGGAGC
CTCGCCCCGAGGCCTCTGAATATATCACGATGTCCGAGGCCATGTGTCCA
CGTAACCTGATAGAATGCGAGCTGTTCTTGAAGATTCTGCGCAAAACAAC
CGACAAAGTTTTTCTCGATTTTTCTGAAGTTGCTGAAGGTTGCCTTAACA
TTTCCAAGAAGTGTATGAATATGAAAAGTCCTACAGTGTTGAAGATGACT
TTGCAGAGTCTGGACGAAATTATATGCCGCGCACCCAGCGCCTCCCCTAC
ATGCGTGGATGCGATTATGGCCAGAAGTGTGCTCTACATAAAAAATAACC
AGAATACGACCGCATGCAATGATTTACTATATTACGAGTCTTTGGATCCA
GCTCTCAAGACAGCGGAGGGAACGATAATCTCGCAGATACTTCACTGTAT
ATGCCTTTTTGTGAATCGGGAGTATGAAGCATCGAAAGATAAACTTTCAG
TTGTAAAAGGCCTCATTGAAGATGGGACACTAGCCGATCGAAGTGAAGTT
AGTCCTTTTCTAGCTCTTATAGAGCAACATGAAGAGAGAATCAACCAAGC
TAGAATAAATGTTGAGTTTTGCAAGAAAGTTCAAACCGAGAACTTTGTGC
CTTTTAAGGGTTTTAAGCTTACTCGGAAAATTCCGTTTGCCAGCCAAGCT
TGTGATTATTCCGAAAAATCCATTGAGAAATCTGGCGGAGTTTTCGCTTC
ATGCGATGTGCCTAAAGGAGAAATTGTTCTTGTGGAGAATCCTGTGTACT
TTCAGTTTAGTGCTCCATTTCTGAACTGCGAGTTGTGTGGAGTGCATCAG
CAACAGCTATACACCTGTGATAACTGTCGTTATAGATCCTATTGCTCAAA
ATCGTGTATGAAATCAGATGCAGAAGTCCACCAGTACGAGTGCTATGGAT
ATAAAATTGGACTCATCCCAATGCTTGAGGCTAACATGCTGTTTCGGTTG
TTTTGCGAAGCAGGGGAATATATTCTTCCGGCTATAGTAGATTATGCGAT
GGATGGCGGAATATTAAGCAATCCCCGAGATGCTTGGACCTTTATACTGG
AGCATGCCCAGGAAGAGGAGAAAACTTATAATCTTGTTGGAGAACTCCTT
GCTACGGCGCCAGATTATAACCTGCTGACAAGGGAAAAGTATACAGAAAT
CGTAACCACGGCATTTCGTTTGTCGGTTTTTATTTACAATGACACGCGCC
TCGCAGAGAAATATTTTTATTTGCTGGCTCTTGTGAAAACAGACTTAATT
ACTGTAATGGCAGCTATACTTTTACGTTTGGGTGGCCACGTTCTATTAAA
TTCCCAGCGAGATAACTTATGCTACAGACAACGTGAAGGTATTGATGCCA
TGAATGAAAATAATGATGAATTCGAAAATTGTGGTATTCTTCCGATGCCA
ACTGATCGTATAAGCGCAAATGTATTCAGTTACTATGGAGTTAATGCGAT
TACAGATTTCGTAGACTGTTATAACAACGTTCACGATAGTCTAGCAGAGA
TCGAACCTGAGTATCCAGAGAAGTTCTCAAATGATAGTCCGATATTTCGT
TTTGCTGATAGGCTACATTCTATTTGCATGCAAAAATATGAAATTGAAGC
TGTTGAAGATCTCGTAAGTGCAGATACTTTGCCCGAACAAGAAATAAACG
AAATTCTTCAAATTTTTAACACATCACAACGTTGCCAGCTGTTGACGAAT
ATTGCTAAATATTTTCAGCAATTTGTTTATCAATATTTTCACAAAATAGA
AAATACCGTCCAACTAAAATCTACGCTTTGTGTTACATTAAAAGCTTTTA
AGCAGAATTGTGGGACGAAAAATATTAAAGCCATATTTTTACCAAATGGA
AAAGTCGTTGGTGTGACAGCTAAAAAAGTCCATAAAGGCGAGGAATTAGT
GATATGCCCTGATTTTGCTAGGTATCGTGATCAAAGTAGAATATTGGATT
TAGCACGACGCGGAGATTTTAATTTTTCGACAAGTATTGAAAACGAATAT
GAAAATGTTACGGCAAGCTTTCTAGACCAT
BO26427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18213-RB | 2640 | CG18213-PB | 1..2040 | 17..2056 | 10200 | 100 | Plus |
| CG18213-RC | 2637 | CG18213-PC | 1..2037 | 17..2056 | 10120 | 99.9 | Plus |
| CG18213-RD | 2631 | CG18213-PD | 1..2031 | 17..2056 | 10030 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18213-RB | 2997 | CG18213-RB | 104..2143 | 17..2056 | 10200 | 100 | Plus |
| CG18213-RC | 2994 | CG18213-RC | 104..2140 | 17..2056 | 10120 | 99.9 | Plus |
| CG18213-RD | 2988 | CG18213-RD | 104..2134 | 17..2056 | 10030 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17037731..17038556 | 1884..1059 | 4130 | 100 | Minus |
| 3R | 32079331 | 3R | 17038623..17038970 | 1059..712 | 1740 | 100 | Minus |
| 3R | 32079331 | 3R | 17037499..17037674 | 2060..1885 | 880 | 100 | Minus |
| 3R | 32079331 | 3R | 17039029..17039195 | 711..545 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 17039347..17039507 | 518..358 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 17039738..17039873 | 247..112 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 17039574..17039685 | 358..247 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 17040006..17040100 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:54:01 has no hits.
BO26427.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:55:48 Download gff for
BO26427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18213-RA | 103..2147 | 17..2064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:00 Download gff for
BO26427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18213-RB | 104..2146 | 17..2059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:42 Download gff for
BO26427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18213-RB | 104..2146 | 17..2059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:42 Download gff for
BO26427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17039738..17039873 | 112..247 | 100 | <- | Minus |
| 3R | 17040006..17040100 | 17..111 | 100 | | Minus |
| 3R | 17037496..17037674 | 1885..2064 | 98 | <- | Minus |
| 3R | 17037731..17038555 | 1060..1884 | 100 | <- | Minus |
| 3R | 17038623..17038970 | 712..1059 | 100 | <- | Minus |
| 3R | 17039029..17039194 | 546..711 | 100 | <- | Minus |
| 3R | 17039260..17039286 | 519..545 | 100 | <- | Minus |
| 3R | 17039347..17039506 | 359..518 | 100 | <- | Minus |
| 3R | 17039574..17039684 | 248..358 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:00 Download gff for
BO26427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12863453..12864277 | 1060..1884 | 100 | <- | Minus |
| arm_3R | 12863218..12863396 | 1885..2064 | 98 | <- | Minus |
| arm_3R | 12864345..12864692 | 712..1059 | 100 | <- | Minus |
| arm_3R | 12864751..12864916 | 546..711 | 100 | <- | Minus |
| arm_3R | 12864982..12865008 | 519..545 | 100 | <- | Minus |
| arm_3R | 12865069..12865228 | 359..518 | 100 | <- | Minus |
| arm_3R | 12865296..12865406 | 248..358 | 100 | <- | Minus |
| arm_3R | 12865460..12865595 | 112..247 | 100 | <- | Minus |
| arm_3R | 12865728..12865822 | 17..111 | 100 | | Minus |
BO26427.pep Sequence
Translation from 16 to 2080
> BO26427.pep
MHRIPLYMGSEPRPEASEYITMSEAMCPRNLIECELFLKILRKTTDKVFL
DFSEVAEGCLNISKKCMNMKSPTVLKMTLQSLDEIICRAPSASPTCVDAI
MARSVLYIKNNQNTTACNDLLYYESLDPALKTAEGTIISQILHCICLFVN
REYEASKDKLSVVKGLIEDGTLADRSEVSPFLALIEQHEERINQARINVE
FCKKVQTENFVPFKGFKLTRKIPFASQACDYSEKSIEKSGGVFASCDVPK
GEIVLVENPVYFQFSAPFLNCELCGVHQQQLYTCDNCRYRSYCSKSCMKS
DAEVHQYECYGYKIGLIPMLEANMLFRLFCEAGEYILPAIVDYAMDGGIL
SNPRDAWTFILEHAQEEEKTYNLVGELLATAPDYNLLTREKYTEIVTTAF
RLSVFIYNDTRLAEKYFYLLALVKTDLITVMAAILLRLGGHVLLNSQRDN
LCYRQREGIDAMNENNDEFENCGILPMPTDRISANVFSYYGVNAITDFVD
CYNNVHDSLAEIEPEYPEKFSNDSPIFRFADRLHSICMQKYEIEAVEDLV
SADTLPEQEINEILQIFNTSQRCQLLTNIAKYFQQFVYQYFHKIENTVQL
KSTLCVTLKAFKQNCGTKNIKAIFLPNGKVVGVTAKKVHKGEELVICPDF
ARYRDQSRILDLARRGDFNFSTSIENEYENVTASFLDH
BO26427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18213-PB | 879 | CG18213-PB | 1..681 | 1..681 | 3565 | 99.9 | Plus |
| CG18213-PC | 878 | CG18213-PC | 1..680 | 1..681 | 3548 | 99.7 | Plus |
| CG18213-PD | 876 | CG18213-PD | 1..678 | 1..681 | 3537 | 99.4 | Plus |
