BO26444.complete Sequence
2074 bp assembled on 2010-08-02
GenBank Submission: KX799794
> BO26444.complete
GAAGTTATCAGTCGACATGGGTCCGACGGATCAAGACTGGATCGGCTGTG
CAGTGTCTATAGCCTGCGACGAGGTCCTGGGCGTCTTCCAGGGCCTGATC
AAGCAGATTTCTGCCGAGGAGATCACCATTGTGAGGGCTTTCCGCAATGG
CGTGCCGCTGCGAAAGCAGAACGCCGAGGTGGTCCTCAAGTGCACGGACA
TTCGCAGCATCGATCTCATCGAGCCCGCAAAGCAAGATCTGGATGGGCAC
ACGGCGCCGCCGCCAGTGGTCAACAAGCCCACGCCCGTCAAGCTGCCCCA
CTTCTCCAACATCCTGGGCAAGCAGCAGCAGCTCCAACTCCAGCAGCAGC
AGCAGCAGCTACAACTCCAGCAGCAACAGAAACAGCAGTTCCAGGAGCAG
GAACGAGAACAGGATCTGCCATCGACGCCGCGGTCAAGGGCCAACGACAA
TGGACGGGTAGCGGCTGGCGGAGCATCGAGTTCTTCGGGCCCACGTGGCA
ACTTCAATTCGGCGCTAAGCGATAAGATGCATCAGCTGAAGCTAATCGAG
ACCAACGGCTCAAATGGCACCCTTAGAACACCACAAACATCCCGTGCGTC
CAGCGCTCAGCAGCAGCCGCAGATATCAACGACTCCCAACAGCGTGGCCG
CCTTTTTTGGCAACATGATACCGCCGAAGGTCGAGGTGAAACTGGGCTCC
TACGTGAGCAACACCCGGGAGAGTTACTGCAGCAGCAGCGGAGATAGCGG
CGAGGCAACTGGTTTGTCGTTGGGCAGCAGCAAACCCATAGATATCGTCA
GCAACGGAGATGGATTTTACAAGCAGACGGCAGCCTCGAGCTATGGGAAT
ACAAATGGAAATGTAAGAAGGAATGGCAATGCCAATAACAATGGAAATGG
CACCGGAAATGGTTCTTATACCAATGGAAATGGCAACGGCAACGGGAAGA
ACAAGCGGAACAGGGTGCGAAGGGAGAGCAGCATGCGGCAGCAACAGGTG
CAACTGACTTTTGGCAGCGAGGCGGACGATCCGCTGATCCACGAGGATTT
CGATTTTGAGGGCAATCTAGCGCTGTTCGACAAGCAGGCAATTTGGGACG
ACATCGAGTCGACGACCCAAAAACCAGATGTGGTGCGGCACATTGTGAAC
AATCATCATCATAAGCCAGAGCAGAAGTATCGGCACGACGAGAACATCCT
GGCCAGCAAACCACTACAATTGCGCCAGATCGAAAGCATGTTCGGCGGCA
GCCAGGACTTTGTGACGGACGACGGTCTCATTATACCGACGATTCCGGCT
TACGTTCGGAATAAAATCGAGATAAGTGCCGATAAGGCGGGCCTCTCTCT
GCAGAGGCAGATCGACATTTTGGCGCGCGGAGCCAGTGATCTGGCCATTA
CACTGCTGGGCGGCGCCAGGCGATTGACGCCGGCCAACAACCATCAGTGG
CCGAAGATTGCCATCATCTGCGATGGCGGCAAAAATATGAGGACAATTAA
CATTGGAGCAGCCACAGGTCGCCAGCTGGCTTCGCATGGGCTTACTGTCC
TGCTGTACGTGGAGCAGGCCAAACTGCTGGAGCAGAACAGCAGCAGCCCA
GAGATTTCATTGTTCAAGGCAACCGACAATGTCATAGTTCACTCAGTAGA
CGCCTTACCCACGCCAGATCTTGTGATATTATCAACTAACACCGCTAATT
TATCGGATGCGATCAGGAAATGGCTCAGTGTAAATCGCGCTTCGGTGCTT
GCCATAGACCCGCCGCCGTGTGGCATTAATGAGGTTGCTATCAAGTACTC
AATACTACCCATACTACCATTAAATGGCATATCAACAGCAACAACATCAT
CATCCTCTTCGGCTGCCGCCACACCAACTCCCATTGCTAGCACTTCGGCA
GCAGCATCGGCTACCAAATCAGCAGCATCAACGAACAATTGTGGCAAATT
GTATTTATGTAATCTAGGTATACCGGATAAATTCTATCGTGATTGTGGCA
TTAAGTACAAAAGTCCGTATGGACATAAATATGTGATACCGATTCACTCA
AAGGACGCAAGCTTTCTAGACCAT
BO26444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edc3-RB | 2043 | CG6311-PB | 1..2040 | 17..2056 | 10185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edc3-RB | 4062 | CG6311-RB | 392..2433 | 15..2056 | 10195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17527705..17528622 | 1492..575 | 4590 | 100 | Minus |
| 3L | 28110227 | 3L | 17528909..17529470 | 576..15 | 2810 | 100 | Minus |
| 3L | 28110227 | 3L | 17526962..17527281 | 2056..1737 | 1600 | 100 | Minus |
| 3L | 28110227 | 3L | 17527483..17527642 | 1652..1493 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 17527336..17527421 | 1737..1652 | 430 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6903 | 1831..1949 | 176 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6845 | 1831..1932 | 175 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6921 | 1800..1937 | 174 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2494 | 1829..1937 | 171 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2429 | 1831..1938 | 155 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6837 | 1829..1946 | 153 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2408..2513 | 1829..1934 | 152 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6860 | 1831..1932 | 143 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2908 | 1829..1933 | 130 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2559 | 1833..1956 | 127 | 57.3 | Plus |
BO26444.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 10:20:01 Download gff for
BO26444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edc3-RB | 409..2448 | 17..2058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:06 Download gff for
BO26444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edc3-RB | 394..2433 | 17..2058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:05 Download gff for
BO26444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edc3-RB | 394..2433 | 17..2058 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:05 Download gff for
BO26444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17527483..17527643 | 1492..1652 | 99 | <- | Minus |
| 3L | 17526959..17527280 | 1738..2058 | 99 | <- | Minus |
| 3L | 17527336..17527420 | 1653..1737 | 100 | <- | Minus |
| 3L | 17527706..17528620 | 577..1491 | 100 | <- | Minus |
| 3L | 17528909..17529468 | 17..576 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:06 Download gff for
BO26444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17520059..17520380 | 1738..2058 | 99 | <- | Minus |
| arm_3L | 17520436..17520520 | 1653..1737 | 100 | <- | Minus |
| arm_3L | 17520583..17520743 | 1492..1652 | 99 | <- | Minus |
| arm_3L | 17520806..17521720 | 577..1491 | 100 | <- | Minus |
| arm_3L | 17522009..17522568 | 17..576 | 100 | | Minus |
BO26444.pep Sequence
Translation from 16 to 2074
> BO26444.pep
MGPTDQDWIGCAVSIACDEVLGVFQGLIKQISAEEITIVRAFRNGVPLRK
QNAEVVLKCTDIRSIDLIEPAKQDLDGHTAPPPVVNKPTPVKLPHFSNIL
GKQQQLQLQQQQQQLQLQQQQKQQFQEQEREQDLPSTPRSRANDNGRVAA
GGASSSSGPRGNFNSALSDKMHQLKLIETNGSNGTLRTPQTSRASSAQQQ
PQISTTPNSVAAFFGNMIPPKVEVKLGSYVSNTRESYCSSSGDSGEATGL
SLGSSKPIDIVSNGDGFYKQTAASSYGNTNGNVRRNGNANNNGNGTGNGS
YTNGNGNGNGKNKRNRVRRESSMRQQQVQLTFGSEADDPLIHEDFDFEGN
LALFDKQAIWDDIESTTQKPDVVRHIVNNHHHKPEQKYRHDENILASKPL
QLRQIESMFGGSQDFVTDDGLIIPTIPAYVRNKIEISADKAGLSLQRQID
ILARGASDLAITLLGGARRLTPANNHQWPKIAIICDGGKNMRTINIGAAT
GRQLASHGLTVLLYVEQAKLLEQNSSSPEISLFKATDNVIVHSVDALPTP
DLVILSTNTANLSDAIRKWLSVNRASVLAIDPPPCGINEVAIKYSILPIL
PLNGISTATTSSSSSAAATPTPIASTSAAASATKSAASTNNCGKLYLCNL
GIPDKFYRDCGIKYKSPYGHKYVIPIHSKDASFLDH
BO26444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edc3-PB | 680 | CG6311-PB | 1..680 | 1..680 | 3505 | 100 | Plus |
