BO26446.complete Sequence
2206 bp assembled on 2010-07-15
GenBank Submission: KX796681
> BO26446.complete
GAAGTTATCAGTCGACATGACCAAGGTGCAAAAAGAGGTGCGATGCGACC
ATTGCGGCACAAGCCAAGGGTCCAAGAGTGTTTTTTCAGGTCAGAAGGTG
TTCCTGGGCAGGAAAATAACAGACGTACTGGAGACCATCACCCACAGAAG
CATCCCATCATCCTTGCCCATCAAGATATGCTTCGTCTGCACCTCCACAT
TCATGTCCAGCGCGGCACTAATCGAGAAGGTCCGCGAGACGGTGGACAGG
GTACAGGAGCAGCCCGCCAAGAAGACTAAGGTAGCGGAAATAGAGGAGCC
ATCGACACAGGAAAGCGATAAGAAGGCGGTTAAGGTGCCAAAAAAGAACA
CCACCCTCCGTCAGCGCAGCAAGTCCATAGCAGCTTTCCCGCCAAGCTTT
GTGAATGGAGCTAATACTAATACAGAAATCGAGATCATTAGTGCTTCGCC
CAAGAAACTCGATAAGACCCCTAAAAAGCAGATATCTCGACTCTTCGAGG
ATAATCTTAACGATTCGGTTAAGCTGACGCCCGCCAAAGAGGTGTCGTCT
ACTAAAAAGGCTTTCCTTAATCTCTTTGGCAACGGCGGCAACGATGCCAT
CGAAGTACTGACCGAGAGCGAGGAAGAGGAGGACTCGGATAAAGGTCCTA
TCACCATTAACACAAATAACTTTCAGTGTCCAGAGTGCGAATTTCACGCA
AAGTTTCCCAAACCGTACAAGGAGCATCTGCAGAAGGAGCACGGTCTTCA
AAGACCACGCATATACCCCTGTACCTTGTGTATTAAGACTTTTGGAGTGC
TTAAGACTTTGAAAAATCATTTAAGGGACACTCACTCACGCACTTTTGAA
AGCGAGGCTAAGACTAAGGCGAAGGAAAGCAAGGAAAAAGAGGCTAAGTC
AGGGGCCAAGAATAAAATTGACGCAAAGGCAAAGGAGACCAATGCTGTGA
GTCAAAGGAAGAAGCCAAAAGAAAAAAAGTCCAAAGAGAAAAAGACAGAG
ATCAAATGTAATGTTGAAACCAAAGTGGTTGACGAAATCGACGACCAAGT
GAACAACAAAAAGGGCACAGATAGTGAGGACGCAGACCAGACCCAGGCTA
CCAAAATCGCCTCCTTTAAAGCGCTAAATGAGTCATTAATGAAGAAAAGG
ATGTTAGAGAACGTGATCGACTCGGAATATACATTTGCCATCAATGGATC
CAGCGCCTCCACTCCCAGGGCGGATTCGAATAATTTTCAGTGCGAGATCT
GCGACTGTGAGCTGATGACCGCCAAGCAGATGCAGGAGCACATGAAGACC
GTCCACAGCATCGACAAGCCAAAGGTTTTCAAGTGCCACGTCTGCGAGAA
GAGTTTGGCTACCAAACAGTCGCTGAAAACGCACATGACTCTACATGCCG
ACGGTGCTGAAGCGCCGAACTCCAGCAAGCGAAAGATTCTGCAGGACGAG
GATGAGGACGTAGACATTCTGGGTACGACTCAGATTGAAAACACGGCCGA
GAAGGTTGAAGGACCTAAGAAATCACAACAAAGCCCTACTAAAGCCGCAA
AGTTCACCAACCGAAAGATTCTGCAAGAAGAGGATGAGGTTGTGGAAATT
GTGGACGCTTTTAAGACTGACAACACCGCGGAGGATGATGAAGGACCCGC
AGAAGAAAAGATTATACGATCCAGGAACAACATTCAGCACCAGGTCGATG
GAGGCATGATTGCACCTCGGTCGCCAGCTAAAAAGACAAAGAAGACCAGT
CACGTAGATCTGTCTGTGTCCACAACCAATGGCAATTCGCCTGCAAAGTC
AGAAAAACGAAAAAAACAAGACAAATCTGAGGACACGCTCCCCTCATCTG
ATGTAGACATAGTGGAAGAAATCAACTACAACGTGCGGCCGCACAAAAAG
GCTCGCCTGGAGTCCATTGGTGACTCAACAGCCGACGAGTCGACCCTCAG
CTGCGACCGGTGCGGGAAGTTCGTCAAATCGCGTCAACGCTTGGACTCGC
ACATGGAGAAAAAGCACGCCGCCAAACTACAGTGCACCCTATGCAAGGAA
GTCTACCAGAACCAAATGGATTACGTGGCTCACTTCTCGAACTGTGGTTC
CGAAGGTGGACTTCCATGCGGCGTAGCCAATTGCAAGAAGGTCTTCACGG
AGGCCAACTTCCTATCCTCGCACCTGCGCAAGCGCCACGCAAGCTTTCTA
GACCAT
BO26446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:54:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-RC | 2175 | CG2199-PC | 1..2172 | 17..2188 | 10860 | 100 | Plus |
| CG2199-RA | 2175 | CG2199-PA | 1..2172 | 17..2188 | 10860 | 100 | Plus |
| CG2199-RB | 2202 | CG2199-PB | 28..2199 | 17..2188 | 10860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-RC | 2640 | CG2199-RC | 104..2275 | 17..2188 | 10860 | 100 | Plus |
| CG2199-RA | 2846 | CG2199-RA | 310..2481 | 17..2188 | 10860 | 100 | Plus |
| CG2199-RB | 2576 | CG2199-RB | 40..2211 | 17..2188 | 10860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1339825..1341861 | 2188..152 | 10185 | 100 | Minus |
| 3L | 28110227 | 3L | 1341928..1342062 | 151..17 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:54:07 has no hits.
BO26446.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:55:49 Download gff for
BO26446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RA | 308..2479 | 17..2190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:02 Download gff for
BO26446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 40..2211 | 17..2190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:44 Download gff for
BO26446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 40..2211 | 17..2190 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:44 Download gff for
BO26446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1339823..1341861 | 152..2190 | 99 | <- | Minus |
| 3L | 1341928..1342062 | 17..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:02 Download gff for
BO26446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1339823..1341861 | 152..2190 | 99 | <- | Minus |
| arm_3L | 1341928..1342062 | 17..151 | 100 | | Minus |
BO26446.pep Sequence
Translation from 16 to 2206
> BO26446.pep
MTKVQKEVRCDHCGTSQGSKSVFSGQKVFLGRKITDVLETITHRSIPSSL
PIKICFVCTSTFMSSAALIEKVRETVDRVQEQPAKKTKVAEIEEPSTQES
DKKAVKVPKKNTTLRQRSKSIAAFPPSFVNGANTNTEIEIISASPKKLDK
TPKKQISRLFEDNLNDSVKLTPAKEVSSTKKAFLNLFGNGGNDAIEVLTE
SEEEEDSDKGPITINTNNFQCPECEFHAKFPKPYKEHLQKEHGLQRPRIY
PCTLCIKTFGVLKTLKNHLRDTHSRTFESEAKTKAKESKEKEAKSGAKNK
IDAKAKETNAVSQRKKPKEKKSKEKKTEIKCNVETKVVDEIDDQVNNKKG
TDSEDADQTQATKIASFKALNESLMKKRMLENVIDSEYTFAINGSSASTP
RADSNNFQCEICDCELMTAKQMQEHMKTVHSIDKPKVFKCHVCEKSLATK
QSLKTHMTLHADGAEAPNSSKRKILQDEDEDVDILGTTQIENTAEKVEGP
KKSQQSPTKAAKFTNRKILQEEDEVVEIVDAFKTDNTAEDDEGPAEEKII
RSRNNIQHQVDGGMIAPRSPAKKTKKTSHVDLSVSTTNGNSPAKSEKRKK
QDKSEDTLPSSDVDIVEEINYNVRPHKKARLESIGDSTADESTLSCDRCG
KFVKSRQRLDSHMEKKHAAKLQCTLCKEVYQNQMDYVAHFSNCGSEGGLP
CGVANCKKVFTEANFLSSHLRKRHASFLDH
BO26446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-PC | 724 | CG2199-PC | 1..724 | 1..724 | 3736 | 100 | Plus |
| CG2199-PA | 724 | CG2199-PA | 1..724 | 1..724 | 3736 | 100 | Plus |
| CG2199-PB | 733 | CG2199-PB | 10..733 | 1..724 | 3736 | 100 | Plus |
