BO26459.complete Sequence
1753 bp assembled on 2010-08-02
GenBank Submission: KX799503
> BO26459.complete
GAAGTTATCAGTCGACATGGAACAGGTTGACTCCTCCACCGAGCTGCACC
TGAATAGGAAAGATCTGGCCGCGCTGGCCGAGGATGTTGTGAAAGAAGAG
GTGATATTAGAAAGCTCCAGCCATCACCATCATCATCATCACCACCAGTT
GGACACCAAGGTTCGCATGGTCACATCCTCCTCCAACGACAACAGTGGTA
GCGGCGGCGCCAGTGGCGGTACAAGCGGAGCGGGCGGAGGAAACGGCGGT
GGCGGTGTGGTTTCGGTGCCCGTATCCCTGCCCATCGGTTCGATGATAAC
CGGCACTACCTTCAATGTGATCACGCCCGACCAGCTGCCCCCTCACTTCA
AGCCGATGCTGTGCGTCGACAACAATGGCTACCTGTCCGGCAGCACGGTC
AGCATGGGCAACGACCTCAAGACGATCGTCATCCAGCAACAGCAGACGCA
ACCAGGCGGCGGCGGTGGCGGCGCCAATAATGCGGGCACCAATACGACCG
CCACAAATACGATTGGACTGAATCACGATGGCTCCGGGAGCAACAATAGC
CACGACAGCCTGGCCACCTTGGAGCACGCCGCGGGCGGAGCGAGTGGCGT
CGGCGGTGGCGGCGGCGGAACGGGTGGTGGCTCCTCGGGATGGTCGGAGA
ACCCGTCAACCCAGCACAATGAGGTCTTCCAGATCCGCTGCAAAACCACC
TGCGCCGAGTTATACCGCAGCAAGCTGGGCTCCGGCGGCCGTGGACGCTG
TGTGAAGTACAAGGACAAGTGGCATACGCCCAGTGAGTTTGAGCATGTGT
GTGGCCGGGGCTCCAGCAAGGATTGGAAGCGTTCGATCAAGTACGGCGGC
AAATCGCTGCAGTCCCTCATCGATGAGGGTACGCTCACGCCGCACGCGAC
CAACTGCAGCTGCACCGTCTGCTGCGACGACGAAGCAGCTTCCGGCCCTG
TCCGTCTCTTTACACCGTACAAGCGGCGGAAGCGGAATCAAACTGATCTC
GATATGGAGTCTGGACCCAAACGCAAGCGTAACACCCATCATAGTAACAA
CAACAACAGTAACACCAATAACAACAACACGAGCGGGAGCGGCGCCAACA
ACTGTGTGGATGTAACTGCAGCTGTGGCTGCTGCAACAGCCAGCGTGGTG
GACGAGAACAACATGTTCCTGTCGGAAGAGAACATCACGTCCAAGGATGA
GCCGTGGGCAGCGCTCAACGACAGCCTGGACACCTCCACCGAGCTGGTCG
ATCAGTCGCAGATGGGCAACACGTACGAACGGGAAACGTTTGTGGTGAAC
ATCAACGATGGATCCTCCATCGCCGTCCTGGACACCAGCCAGTCGATGAA
GAACATCGAGCACGTGTACTGCACCATGGTCAAGGCCACCAATGACTTCA
AACGCATGCTTAACGACATGAAGCAGTCCTTCGAGCGTCGCATCGAGGTT
CTGCAAAAGGAGCGCGATGCAGCGGTCAGCGCGATGCGTGTCCAAGTGCA
CGCGGACATCGATGATCCAAATATTTCAGGCTCCCTGCACGGCAACGAGA
TCATTTCGGCTAAGAAGTGCGCCAACTGTAACCGCGAAGCATTGGCCGAG
TGCTCACTGTGCCGAAAGACGCCGTACTGCTCGGAGTTCTGCCAGCGGAA
GGATTGGAATGCTCACCAGGTGGAGTGCACAAGGAATCCACAAACGACAA
CGCAGCAGGTCATGCTGTTGATCGACGATCAGTCCGCAAGCTTTCTAGAC
CAT
BO26459.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Deaf1-RB | 1722 | CG8567-PB | 1..1719 | 17..1735 | 8595 | 100 | Plus |
| Deaf1-RD | 1731 | CG8567-PD | 1..1728 | 17..1735 | 8470 | 99.5 | Plus |
| Deaf1-RA | 1731 | CG8567-PA | 1..1728 | 17..1735 | 8470 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Deaf1-RB | 2416 | CG8567-RB | 362..2080 | 17..1735 | 8595 | 100 | Plus |
| Deaf1-RD | 3588 | CG8567-RD | 362..2089 | 17..1735 | 8470 | 99.5 | Plus |
| Deaf1-RA | 2425 | CG8567-RA | 362..2089 | 17..1735 | 8470 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19819209..19820001 | 146..938 | 3965 | 100 | Plus |
| 3L | 28110227 | 3L | 19828315..19828945 | 937..1567 | 3155 | 100 | Plus |
| 3L | 28110227 | 3L | 19829018..19829187 | 1566..1735 | 850 | 100 | Plus |
| 3L | 28110227 | 3L | 19818535..19818666 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:41:29 has no hits.
BO26459.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 10:19:57 Download gff for
BO26459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Deaf1-RB | 356..2074 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:03 Download gff for
BO26459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Deaf1-RB | 362..2080 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:02 Download gff for
BO26459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Deaf1-RB | 362..2080 | 17..1737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:02 Download gff for
BO26459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19829020..19829187 | 1568..1737 | 98 | | Plus |
| 3L | 19818535..19818666 | 17..148 | 100 | -> | Plus |
| 3L | 19819212..19820001 | 149..938 | 100 | -> | Plus |
| 3L | 19828317..19828945 | 939..1567 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:03 Download gff for
BO26459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19811635..19811766 | 17..148 | 100 | -> | Plus |
| arm_3L | 19812312..19813101 | 149..938 | 100 | -> | Plus |
| arm_3L | 19821417..19822045 | 939..1567 | 100 | -> | Plus |
| arm_3L | 19822120..19822287 | 1568..1737 | 98 | | Plus |
BO26459.pep Sequence
Translation from 16 to 1753
> BO26459.pep
MEQVDSSTELHLNRKDLAALAEDVVKEEVILESSSHHHHHHHHQLDTKVR
MVTSSSNDNSGSGGASGGTSGAGGGNGGGGVVSVPVSLPIGSMITGTTFN
VITPDQLPPHFKPMLCVDNNGYLSGSTVSMGNDLKTIVIQQQQTQPGGGG
GGANNAGTNTTATNTIGLNHDGSGSNNSHDSLATLEHAAGGASGVGGGGG
GTGGGSSGWSENPSTQHNEVFQIRCKTTCAELYRSKLGSGGRGRCVKYKD
KWHTPSEFEHVCGRGSSKDWKRSIKYGGKSLQSLIDEGTLTPHATNCSCT
VCCDDEAASGPVRLFTPYKRRKRNQTDLDMESGPKRKRNTHHSNNNNSNT
NNNNTSGSGANNCVDVTAAVAAATASVVDENNMFLSEENITSKDEPWAAL
NDSLDTSTELVDQSQMGNTYERETFVVNINDGSSIAVLDTSQSMKNIEHV
YCTMVKATNDFKRMLNDMKQSFERRIEVLQKERDAAVSAMRVQVHADIDD
PNISGSLHGNEIISAKKCANCNREALAECSLCRKTPYCSEFCQRKDWNAH
QVECTRNPQTTTQQVMLLIDDQSASFLDH
BO26459.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Deaf1-PB | 573 | CG8567-PB | 1..573 | 1..573 | 3049 | 100 | Plus |
| Deaf1-PD | 576 | CG8567-PD | 1..576 | 1..573 | 3035 | 99.5 | Plus |
| Deaf1-PA | 576 | CG8567-PA | 1..576 | 1..573 | 3035 | 99.5 | Plus |
| Deaf1-PE | 536 | CG8567-PE | 7..536 | 44..573 | 2821 | 100 | Plus |
| Deaf1-PC | 539 | CG8567-PC | 7..539 | 44..573 | 2807 | 99.4 | Plus |
