BO26460.complete Sequence
1105 bp assembled on 2010-07-01
GenBank Submission: KX795840
> BO26460.complete
GAAGTTATCAGTCGACATGGATATGCATGAGCTTACAGCTGTTTCCAAAA
TGAAAGGTCCCTATTTTACTTCCCAGTACTTCAGTTCGCAAGAATTTCCA
CGTACTAATGGGGTAACTAGACTGCGCTTCTCTCTCAACATGCTGATACA
TATCAGCATTAGAAATTGGAGTGCTGATGAGTGCCTAATGCTCGGTCTGA
TGTATCTATTCCTAAAAGATTACAACCAATCGGAGAATTGGTTGGAATTG
GCTCTATATCATTACGATGATAATGTCAGTCCAGAAGTTCTTAAAATTAA
ACTTTGGAACTACCCGAACCTGTTGGAATCCCTAGTGGAGGCCAACAAGG
GACTTGGTCACTATTTCGAAGCTAAAAAGTATGCGAATGAGCTGCTCTCA
ATCAATCCCAATCACACTTATATGCTGACACAACTGCCAAAGCTAAAACA
TTTGCAATCGAATCCTGCCAAACTCACAAAACCGAAGAAAGTGTTCCAGC
TGCAGAAAGAAATATGCTCAAAACGCTATAGGAGGAAATCAGGAGTTCTT
GTATGTCGCTATGTGGATTGGACACCATTCCTTAAACTGGCACCCTTAAA
AATGGAGGAGTTGTCCATGAAACCCTATATCAGTATTTTTTACGGATTCC
TTGGTCAAAAGGACATAGAAGTTTTAAAGAATGTATCCAGACCAAAACTT
CAACGAATCGAACATTTATCAGGGAATTGCAGTTGCAAAATCGGAAATCT
TTCTACTTCTTTACATGATGTTGTACGCAAAGTAAATGAATTAATTCTTG
GTATTACTGGATTTCCATTGAAGGGAAATCAAATGCTAGAAGTTATAAAT
TATGGTATTGCTGGGAACTACAATCCCGAAGAGCCCAAGATCCACAACAA
AGCAAATGCTTTCATCTTTTTGAGCAATGCTGGAAAGGGCGGAGAAATAG
TTTTTCCTTCTCGCCATTTAAAAGTCAGACCTCGAAAGGGTTCAATGTTA
GTTTGGGAAAATCTCAAAAAAAGTCTTATTTATCATCAGTGTCCAATTCT
AAAGGGAAATATGTGGGTGGCTAACAAAGTGTTAAACGCAAGCTTTCTAG
ACCAT
BO26460.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4174-RF | 1422 | CG4174-PF | 489..1419 | 157..1087 | 4655 | 100 | Plus |
| CG4174-RE | 1422 | CG4174-PE | 489..1419 | 157..1087 | 4655 | 100 | Plus |
| CG4174-RD | 1422 | CG4174-PD | 489..1419 | 157..1087 | 4655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13380-RD | 3428 | CG13380-RD | 2299..3229 | 157..1087 | 4655 | 100 | Plus |
| CG13380-RB | 3231 | CG13380-RB | 2102..3032 | 157..1087 | 4655 | 100 | Plus |
| CG4174-RF | 3423 | CG4174-RF | 2294..3224 | 157..1087 | 4655 | 100 | Plus |
| CG13380-RD | 3428 | CG13380-RD | 1472..1612 | 16..156 | 705 | 100 | Plus |
| CG13380-RB | 3231 | CG13380-RB | 1472..1612 | 16..156 | 705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18600639..18601202 | 919..356 | 2820 | 100 | Minus |
| 3L | 28110227 | 3L | 18601262..18601466 | 358..154 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 18600429..18600576 | 1067..920 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 18615741..18615845 | 156..52 | 525 | 100 | Minus |
| 3L | 28110227 | 3L | 18616000..18616036 | 52..16 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:58:33 has no hits.
BO26460.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:02:45 Download gff for
BO26460.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13380-RB | 1461..2531 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:10 Download gff for
BO26460.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13380-RB | 1473..2543 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:40 Download gff for
BO26460.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4174-RF | 1473..1614 | 17..157 | 99 | <- | Plus |
| CG4174-RF | 2295..3224 | 158..1089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:40 Download gff for
BO26460.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18600345..18600368 | 1068..1089 | 91 | <- | Minus |
| 3L | 18600429..18600576 | 920..1067 | 100 | <- | Minus |
| 3L | 18600639..18601201 | 357..919 | 100 | <- | Minus |
| 3L | 18601264..18601463 | 157..356 | 100 | <- | Minus |
| 3L | 18615741..18615844 | 53..156 | 100 | <- | Minus |
| 3L | 18616000..18616035 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:10 Download gff for
BO26460.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18593445..18593468 | 1068..1089 | 91 | <- | Minus |
| arm_3L | 18593529..18593676 | 920..1067 | 100 | <- | Minus |
| arm_3L | 18593739..18594301 | 357..919 | 100 | <- | Minus |
| arm_3L | 18594364..18594563 | 157..356 | 100 | <- | Minus |
| arm_3L | 18608841..18608944 | 53..156 | 100 | <- | Minus |
| arm_3L | 18609100..18609135 | 17..52 | 100 | | Minus |
BO26460.pep Sequence
Translation from 16 to 1105
> BO26460.pep
MDMHELTAVSKMKGPYFTSQYFSSQEFPRTNGVTRLRFSLNMLIHISIRN
WSADECLMLGLMYLFLKDYNQSENWLELALYHYDDNVSPEVLKIKLWNYP
NLLESLVEANKGLGHYFEAKKYANELLSINPNHTYMLTQLPKLKHLQSNP
AKLTKPKKVFQLQKEICSKRYRRKSGVLVCRYVDWTPFLKLAPLKMEELS
MKPYISIFYGFLGQKDIEVLKNVSRPKLQRIEHLSGNCSCKIGNLSTSLH
DVVRKVNELILGITGFPLKGNQMLEVINYGIAGNYNPEEPKIHNKANAFI
FLSNAGKGGEIVFPSRHLKVRPRKGSMLVWENLKKSLIYHQCPILKGNMW
VANKVLNASFLDH
BO26460.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4174-PF | 473 | CG4174-PF | 163..473 | 47..357 | 1650 | 99.7 | Plus |
| CG4174-PE | 473 | CG4174-PE | 163..473 | 47..357 | 1650 | 99.7 | Plus |
| CG4174-PD | 473 | CG4174-PD | 163..473 | 47..357 | 1650 | 99.7 | Plus |
| CG15539-PC | 508 | CG15539-PC | 169..494 | 55..357 | 291 | 28.2 | Plus |
| CG15539-PA | 386 | CG15539-PA | 46..372 | 55..357 | 283 | 28.4 | Plus |
