BO26477.complete Sequence
2953 bp assembled on 2010-08-02
GenBank Submission: KX794738
> BO26477.complete
GAAGTTATCAGTCGACATGACGACTGACACCCGCCGACGCGTCAAGCTGT
ACGCGCTGAATGCGGAACGGCAATGGGATGATCGTGGCACTGGCCACGTG
TCATCCACCTATGTGGAAAGACTAAAAGGCATCTCGCTTTTGGTGCGAGC
CGAATCCGATGGATCTCTACTTTTGGAGAGCAAGATACAACCGGACACCG
CATACCAGAAGCAACAGGATACGCTGATCGTGTGGTCCGAGGGGGATAAC
TTTGATCTGGCCCTGAGTTTCCAGGAAAAGGCGGGCTGCGACGAAATATG
GGAAAAGATATGTCAGGTGCAAGGCAAGGATCCATCTGTAGAAATAACTC
AAGACATCGTCGAAGAGTCTGAGGATGAGCGGTTTGAGGACATGTCGGAT
ACTGCGCCACCCATTGAGCTACCACCCTGCGAGCTTTCCCGGCTGGAGGA
CATCTCGGAAACGATACAAAGCTGTCTCTCCACGCCGCTGCGAAAGGAAA
AGTTGTCGATGGCTCTGGAGTCGGAGAGCTATATCAAGAAGCTGCTGAAC
TTGTTCCACGTGTGTGAGGACCTGGACAATACCGAGGGCCTGCATCACCT
TTTTGAGATCTTCAAGAACATCTTCTTGCTAAATAAGAACGCGCTCTTTG
AGATTATGTTTGCGGATGATACCATCTTTGATGTGGTCGGGTGCCTGGAG
TACGATCCGAGTGTGTCTCAGCCCAAAAAGCATCGACAGTATCTGAAGCA
GTTAGCCAAGTTCCGCGAGGCAGTGCCGATTAAAAACCTGGACCTGCTGG
CTAAGATTCACCAGACGTTCCGGGTGCAGTACATCCAGGACATTATCCTG
CCCACACCATCGGTCTTTGTCGAAGACAACATGCTGAACACCCTGTCCAG
CTTCATCTTCTTCAACAAGGTGGAGATTGTCACGATGATCCAGGACGACG
AGCGGTATCTCCTGGATGTGTTTGCTGTTCTCACCGATCCCACCACCGGA
GACGCGAAACGCCGCGACACAGTTCTCTTCCTCAAGGAGTTCTGCAACTA
TGCCCAGAACCTGCAGCCGCAGGGCAAGGACTCGTTCTACAAAACTCTCA
CCTGCCTAGGCATTCTGCAGGCGCTGGAACTCACTCTCGTGATGAACGAC
AAGAAGACCAAATCGGCCTCCATCGACATCCTCACGGCCATCGTAGAGTT
CTCGCCTCTGGTAGTGCGCAATTACACGCTCAACCAGGCCAATCGGCCAG
AAGTGGAGCGTATGCTACTGAACATTGCCATCGAACAAATGCTGAATGAC
TCGGAGCCGGAGCTTGGAATTGCGGTGCAGCTAATGGGTATCGTCAAGAT
TCTGTTGGAGCCGGAAAACATGCTCACCGAGAAGGGCGATTTTCTCAACT
TCTTTTACAAATACAGTGTGCAAACGTTAGTGGCCCCGGTGATACTTAAC
ACGATAGGCGACCGTCCGCAAAACGAGGACTATCAGACGGCCCAGCTGCT
GGGAATCGTCCTGGACATTCTTTCGTTCTGCGTGGAACACCACAGTTATC
ACATTAAAAACTTTTTGTTGCAAAAGGATCTCCTCAAGCGAATACTGGTG
CTAATGAAGAGCACACATACGTTCCTTGTCCTCGGCGCTCTGCGATTACT
GCGCAAGATAATTGCACTTAAAGATGAGTTTTACAATAGACACATTGTCA
AGTGCAATCTGTTTGCGCCGGTGGTAGATGCCTTCATTCGCAACAACGGC
CGATACAACCTTCTGGAGTCAGCAATTCTGGAGCTGTTTGAGTTTATAAA
ACTCGAGGATATCCGCACTCTGTGCGTTTACTTCGTGGAGAACTTCAGCA
AGATATTTGATGAAATCGAATACGTGCAGACATTTAAGTACTTGAAGAAT
CGCTACGATCAGTACCAGGATCGGCTTAAGGACCGCGACAAGATGGAAAA
CCGAACTGACGGCGGTGGCCGGTTTCGTCGGGATCAGCGGCAAATGGAGG
AGGAAGAGGAAATGTGGTTTAACGAGGAGGACGATTTCACCGAGGAAATC
GACACATACAACAATGTCATGAAATCCGTCAGCGAAAAGAATGGCCCGCA
AACGCAAAACCAGCAGAAATCCTCTCCGCCACACAGCACGTCGCCGCACA
GTGGATTGTTGGGAAGCCTGAGCACCACCGCGTCATCCACTGCCACATCC
GCCACGTCAGGTGCACCGGTGGCCAGCGGCAGCAGTAGCCCCGAGGCCAT
CTCCGCCGACGAGCAGACGCAGGCGGCGGTGCATTTGGCTGCCGCTGCCC
TTCAGCACCACCAGCAACAGCAACAGCAGCAGCAGCAGAACCCATTCCAG
CAACAGACACAGCCCGAGATCGCGGAGCTACAACAGCAGCTGAGCAGCGT
GGAAGCGCCTCAAAGCCAGGAGTTGGAGCTGTCACAATCGGCCGCCGCCA
GTGCATCGCCCACTTCGTCATCCTCGTCTCTGGAAGCCTCGACGTCCTCT
TCATCGGCGTCATCGTCTTCATCCTCGTCGTCCTCGTCCTCGCCGCCCGG
CTCATCGGCCGCAGCATCGCTATGCGATTCGGCGACAGTAGCCGCCGTGG
CAGCATCACAGTTTCTCTCAACGATCGCCACAGCCATGGCGGCCTCTGTG
ACGGCGGCGGCGGCAACAAACAGCTCCCCGAGCATTTCGCCAGCTCCAGC
TGTGTCCAGTCCGGATATCGAGAACGCCGACGCCCAGTTGCCGCCCAGCG
ATGACGCCAGCAGCCCGGCCAGTGGGGAGCAAGACGCTAACAGCACGGAA
GGTACCAGCAGTGAGGCCGACAAGACGACGGCCAAAAAGGGTCTGGTGGA
CTATGAGAGTGATTCTGGCGAAGATGACTACGAGGAGGATGAGTACTCCG
AGGGGCCACAAGCACAAAAGCGCGCGCGTCAGGCAGCAAGCTTTCTAGAC
CAT
BO26477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flfl-RD | 2922 | CG9351-PD | 1..2919 | 17..2935 | 14595 | 100 | Plus |
| flfl-RE | 2943 | CG9351-PE | 1..2940 | 17..2935 | 14350 | 99.3 | Plus |
| flfl-RB | 2943 | CG9351-PB | 1..2940 | 17..2935 | 14350 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flfl-RD | 5618 | CG9351-RD | 524..3443 | 16..2935 | 14600 | 100 | Plus |
| flfl-RE | 3888 | CG9351-RE | 624..3564 | 16..2935 | 14355 | 99.3 | Plus |
| flfl-RB | 3788 | CG9351-RB | 524..3464 | 16..2935 | 14355 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13688344..13689286 | 314..1256 | 4715 | 100 | Plus |
| 3R | 32079331 | 3R | 13690535..13691299 | 2076..2840 | 3825 | 100 | Plus |
| 3R | 32079331 | 3R | 13689911..13690185 | 1688..1962 | 1375 | 100 | Plus |
| 3R | 32079331 | 3R | 13689597..13689853 | 1433..1689 | 1285 | 100 | Plus |
| 3R | 32079331 | 3R | 13688044..13688235 | 127..318 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 13689360..13689538 | 1255..1433 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 13687863..13687976 | 16..129 | 570 | 100 | Plus |
| 3R | 32079331 | 3R | 13690273..13690386 | 1962..2075 | 570 | 100 | Plus |
| 3R | 32079331 | 3R | 13691629..13691730 | 2834..2935 | 495 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 08:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2514 | 2303..2493 | 232 | 60.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1145 | 2299..2390 | 190 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6881 | 2297..2472 | 184 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 2303..2398 | 184 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6829 | 2328..2437 | 117 | 58.6 | Plus |
BO26477.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 10:20:04 Download gff for
BO26477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flfl-RD | 488..3406 | 17..2937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:11 Download gff for
BO26477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flfl-RD | 525..3443 | 17..2937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:08 Download gff for
BO26477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flfl-RD | 525..3443 | 17..2937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:08 Download gff for
BO26477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13689913..13690185 | 1690..1962 | 100 | -> | Plus |
| 3R | 13690274..13690386 | 1963..2075 | 100 | -> | Plus |
| 3R | 13687864..13687975 | 17..128 | 100 | -> | Plus |
| 3R | 13688046..13688233 | 129..316 | 100 | -> | Plus |
| 3R | 13688347..13689285 | 317..1255 | 100 | -> | Plus |
| 3R | 13689361..13689538 | 1256..1433 | 100 | -> | Plus |
| 3R | 13689598..13689853 | 1434..1689 | 100 | -> | Plus |
| 3R | 13690535..13691298 | 2076..2839 | 100 | -> | Plus |
| 3R | 13691635..13691730 | 2840..2937 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:11 Download gff for
BO26477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9513768..9513955 | 129..316 | 100 | -> | Plus |
| arm_3R | 9513586..9513697 | 17..128 | 100 | -> | Plus |
| arm_3R | 9514069..9515007 | 317..1255 | 100 | -> | Plus |
| arm_3R | 9515083..9515260 | 1256..1433 | 100 | -> | Plus |
| arm_3R | 9515320..9515575 | 1434..1689 | 100 | -> | Plus |
| arm_3R | 9515635..9515907 | 1690..1962 | 100 | -> | Plus |
| arm_3R | 9515996..9516108 | 1963..2075 | 100 | -> | Plus |
| arm_3R | 9516257..9517020 | 2076..2839 | 100 | -> | Plus |
| arm_3R | 9517357..9517452 | 2840..2937 | 97 | | Plus |
BO26477.pep Sequence
Translation from 16 to 2953
> BO26477.pep
MTTDTRRRVKLYALNAERQWDDRGTGHVSSTYVERLKGISLLVRAESDGS
LLLESKIQPDTAYQKQQDTLIVWSEGDNFDLALSFQEKAGCDEIWEKICQ
VQGKDPSVEITQDIVEESEDERFEDMSDTAPPIELPPCELSRLEDISETI
QSCLSTPLRKEKLSMALESESYIKKLLNLFHVCEDLDNTEGLHHLFEIFK
NIFLLNKNALFEIMFADDTIFDVVGCLEYDPSVSQPKKHRQYLKQLAKFR
EAVPIKNLDLLAKIHQTFRVQYIQDIILPTPSVFVEDNMLNTLSSFIFFN
KVEIVTMIQDDERYLLDVFAVLTDPTTGDAKRRDTVLFLKEFCNYAQNLQ
PQGKDSFYKTLTCLGILQALELTLVMNDKKTKSASIDILTAIVEFSPLVV
RNYTLNQANRPEVERMLLNIAIEQMLNDSEPELGIAVQLMGIVKILLEPE
NMLTEKGDFLNFFYKYSVQTLVAPVILNTIGDRPQNEDYQTAQLLGIVLD
ILSFCVEHHSYHIKNFLLQKDLLKRILVLMKSTHTFLVLGALRLLRKIIA
LKDEFYNRHIVKCNLFAPVVDAFIRNNGRYNLLESAILELFEFIKLEDIR
TLCVYFVENFSKIFDEIEYVQTFKYLKNRYDQYQDRLKDRDKMENRTDGG
GRFRRDQRQMEEEEEMWFNEEDDFTEEIDTYNNVMKSVSEKNGPQTQNQQ
KSSPPHSTSPHSGLLGSLSTTASSTATSATSGAPVASGSSSPEAISADEQ
TQAAVHLAAAALQHHQQQQQQQQQNPFQQQTQPEIAELQQQLSSVEAPQS
QELELSQSAAASASPTSSSSSLEASTSSSSASSSSSSSSSSSPPGSSAAA
SLCDSATVAAVAASQFLSTIATAMAASVTAAAATNSSPSISPAPAVSSPD
IENADAQLPPSDDASSPASGEQDANSTEGTSSEADKTTAKKGLVDYESDS
GEDDYEEDEYSEGPQAQKRARQAASFLDH
BO26477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flfl-PD | 973 | CG9351-PD | 1..973 | 1..973 | 4913 | 100 | Plus |
| flfl-PE | 980 | CG9351-PE | 1..980 | 1..973 | 4895 | 99.3 | Plus |
| flfl-PB | 980 | CG9351-PB | 1..980 | 1..973 | 4895 | 99.3 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 452..778 | 647..975 | 184 | 22.6 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 722..1062 | 644..975 | 176 | 23.4 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 363..629 | 696..975 | 174 | 23.3 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 770..1085 | 638..964 | 172 | 22.3 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 398..712 | 661..975 | 168 | 23.5 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 397..679 | 696..975 | 167 | 25 | Plus |
| Mur29B-PA | 555 | CG31901-PA | 81..325 | 702..958 | 167 | 26.4 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 500..826 | 656..973 | 166 | 24 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 924..1179 | 687..965 | 164 | 23.3 | Plus |
