BO26480.complete Sequence
4261 bp assembled on 2010-08-02
GenBank Submission: KX797916
> BO26480.complete
GAAGTTATCAGTCGACATGCAGAAGGCGCGTCCCAGCAAGGGCACGCCCA
AGGCAGCTGGCGGAGCCCGGCAGAGCGGCCAGTTTCGCGTACCGCAGCTA
ACTGCTCAGCAACAATTGCGGGCGCAGCAACAACAGGAGGAGGAGGACGC
CGCCGTGGACGCGCTGGATGATGCACTGATCTTCGACGACGAGGAGGGCG
GCACCCGGATCGGCGACATATACATACCGCCTCCGGTGCCGCCACATTGC
TCCATGGAGAGCACCGGACCGCGCCTGATCATCTCGAAAATTGTAAATCG
GAATTTCAAGAGCTATGCGGGCGAAGTGGAATTGGGTCCCTTCCACCAGA
GCTTCACTGCCATCATTGGACCCAATGGCAGTGGCAAGAGCAACGTTATC
GACTCCATGATGTTTGTGTTTGGTTGCCGCGCCAATCGCATCCGTTGCAA
GCGTGTCTCCACCTTGATCCACTCCTCGTCTAGTTATCCCAATTTACGCA
GCTGCTCGGTCGCCGTCCACTTCAAGCAGATCGTAGACAAGGGCGACGGC
ACATGCGAGGACGTGCCCGACTCCAGCATTGTTATCGAACGCACTGCCAT
GTCGGACAACTCTTCCTACTACCAGATCAACGACAAACGGGCGCAGCTCA
AGGATGTGGCTAAGCTGCTTAAGAAGCATCATGTGGATCTGGAGCACAAT
CGCTTCCTCATTCTGCAGGGCGAAGTGGAGTCCATTGCCATGATGAAGCC
AAAAGGGCAGACTGAAAATGAAACTGGAATGTTGGAATACCTGGAGGATA
TTGTCGGAACACAGCGCTACATTCGCCCACTGCAGCAGATAAACCAACGG
GTAGATCAACTCACAGACGACCGAACAGAGAAGCACAACCGCTGCAAGCT
GGCCGAGCGCGAGATGAAAGATCTGGAGCAACCGTTCAATGAGGCCGTCG
ACTATCTGAAGAAGGAGAATGAGCTGGTGCGCACCAAATCCTTCCACATC
CAAAAGATCATCAGCATCAAAAAGAGCAAGCTGGAGCAGTACACCCAGGA
GCATGAAGCCTGTGCGGAAGAGCTAAAAACCCACGACGAGGGCACTGCTG
CCCTGAAACAATCACGAGCCGAAAAGGAAACAATCATCCGAAAGGAAATT
GAAGAATACGAAGCTCTAGTGAAAAAGCGCGAACAGATCAAGAAAAGACT
TGTGACTGTTGAGAGTGCCTACACAGAGATCCAGAGCACAATGGAGAACA
CGAACAAGCAGCGCAAGAAGGACAAAGCCCAGATAGAAAAGAACGAAAAA
GAGCTGGAGGATCTGCACAAGTTGCCGGAGAAAAATCAGCGCGAGATCGA
GGATTGCAACAAGAAATTGGAGAGCCTGGAAGTAAGTAAGGTGACACTGA
ATGAGGAGCTTGAAAAGCAGCAGGCCGAGTTAACTAAAACCACTGCACCG
CTTACCGAGAAGCGCCTTAAGCTCAGTGACGAACTGGTGGGCCTTAAGGA
GAAGGTCAACACGGCTAAAGGAGAGGTTCAAGTGTTCGAGTCGCAGCTCA
AGATCCTTAAACAGGCAGAGACCACTGAGTCTAGGAAATATGAAACCCTA
AAAAGTTCGTACGAGCAGTCGCAGAAAAGTCTGGAGGAGAAAGTAACAAG
GGTGGACGAGCTGAAAGAAAGCATTCCACGGATGAAGACCGAAATTGCCA
GCAAGTCCGCGGAAGTGGACAAAATGGTTAAAGAGGAACGCAACCTATCC
ATGCAGTGCAACAAACTAAGAACAGAGATCAATGAAAGATCTAGCGTCAT
GCAGGCTCAGCGATCCAATAACAAGGTCCTAGACTTCCTCATGCGTATGA
AGATGGAGGGAAAGATCCCTGGTATTCTAGGACGCCTGGGTGATTTGGGT
GGCATAGATGCCAAGTACGACATTGCTATTTCGACTGCCTGCGGGCGGTT
GGACAACATTGTTACGGACAACTATGAGACCGCATCGGCGGCCATTGGCG
CTTTAAAGGAGTACAACGTGGGCAGAGCCACCTTTATTACGTTGGACAAG
ATTGAGCACCATCGTCGTGAGGCCAACTCCAGGATAAATACACCAGAAAA
CGTTCCTCGTTTGTACGATCTGGTTAAGGTTGAAGATGACCGCGTACGAA
CCGCTTTCTATTTCGCCCTACGGAACACACTGGTATGTGACGATCTAGAA
CAGGGCACCCGCATCGCCTACGGCAGGGAACGCTACCGAGTTGTGACCTT
ACGTGGTGAGATGATCGAGATGACGGGAACCATGTCTGGTGGCGGCAGTC
GTCCTATACGCGGAAAAATGGGCACCCAGGTGCGCACCAAGACGGCAGAA
TCGGCTGACAGTTCGCAAATATCTCAGAAGGCGTTAGAAGACATGCAGAT
TCAGGCGGAGGAGTTACAGGCCCGAGTCAATTATTGCCAGGAACAGCAGG
GCAGTCTTGAGCGCGAGATTCAAACCCTGAAGAATGGCTTGCAGCGTGAC
GAGGCGGAGTACAAGCGGCTGGCGGTGAGCATCACTTCTTTGGAACAACA
GATGGCCAGCAACCTGAAGCAATGCGAGGCGCAGCGGCAGCGAATGCTCA
AGAAAACAACAGACGAAAGGGCAGTCAAGGAGCGGGAGGAGCAAATAGAA
GCAGCGAAGCAAGAGCTGGAACAAGCACAATTCGCCGAACAGGCTGTCTC
CAGCCAAATCGAAGAGATCCAGAACCAATACGATACCCTTAGAAATGAAA
GTGTCAAGCCTGTGGAGGCCAAGATCAAGAAGGTAAATAGCCAGATAGAA
AAGCTGGCCGCCAATGTGCGGTCCTTGAATGTGGGCTTGGCCACAGCAGA
TCGAAATATAACGAAAATCACTGGAAACAATAATAATCTCCGTGAGAATA
TAAAAGCTGCAGAAGAAAAATTGAAATCGTTGAATGAGGATCGAAATAAG
GCTAAGGAAAAGAAGGAGGAGTTGGAAAAGGAAATAGAGGAATCGGAAGC
GTCCATCGAGGGCGCCAAATCACAATCCTCCGATATAAAAAAAGAAATAG
ATGAGATCACCAAGGAGGAGAACAAACGAAATATCGAGCGCATTGAAATA
GATACTAAGCTGCAAGCTGCAGCGGGAAAAATGAACAAGGTGAAGAATGA
CATTCCCGGATGGCAGGCTCAACTGGCGCCTTTGAAGCTCAACGAGATTC
CAGGAGAGACTGAACCGCAAGCGCCACTCAAAGAACTCAACGAAGAAGAG
CTGGAGGCAGAGACTCTGGAAGCCTTGCAATATAAGCAAACTATGCTGGA
GGAAGATCTGAAAACAAAGAAGCCCAACTTGAGTTGCATAAAGGAGTTCA
ACGAGAAGCGCTTAGTCTACCTCGATCGCGTCCGTGTGCTGGAGGACATC
ACCTCCAAGCGCAATGAGATGCGCGACAAGTACGAAGAAGTTCGCAAGCG
ACGGTACAAGGAGTTCATGGATGGCTTTAGCATTATAACAAGAAAACTGA
AGGAAATGTACCAGATGATCACACTGGGCGGCGATGCTGAGCTGGAGCTG
GTGGACTCCATGGATCCGTTCACCGAGGGCGTAAATTTTACTGTGCGACC
GCCAAAGAAAAGCTGGAAATACATCTCGAATCTCTCAGGTGGTGAGAAAA
CTCTCTCCTCATTGGCACTTGTGTTTGCCCTGCATTATTACAAGCCCTCT
CCGCTGTACTTCATGGATGAAATTGATGCGGCGCTGGATTTCAAGAATGT
GTCTATAGTGGGTCACTATATCAAGGAACGTACGAAAAACGCTCAGTTCA
TAATTGTTTCACTTCGTGTCAACATGTTTGAGCTGGCCAACTTCCTGGTG
GGCATATACAAGGTCAGCGATTGTACGGACTCCATCACTATGCTGAACTA
TCCGCCTACGCTGCCCACTCAGTCGCCAGTGGTCGCTAACAGCCAGTACG
TGGGTGGAACAATTGAGGGGGATAACACGATAGCTGCCGAGAACCAAGAC
GATACCCCCACGAAGAAGAGCCAATCGCCGCCGTCAGAGCAAATAGTCCG
CTTGATTAGTGAGTTGGGGAGGGATACCACATTTGCGCCGCCCTTGGAAA
GTACGGTGAGGGACACAATACTCGCGCAAAATCTGAAACAGGCCGCCACT
GAGGTTGCTGCTCAACCGTCAGATGCCACGGGAAGAGTAACCACGGATGT
GTCCCTAGCAAGCCCGCCATCTTCCCCAGCCATACTTAATGTTGCAAGCT
TTCTAGACCAT
BO26480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| glu-RA | 4230 | CG11397-PA | 1..4227 | 17..4243 | 21135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| glu-RA | 4521 | CG11397-RA | 112..4338 | 17..4243 | 21135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16734335..16736019 | 3776..2092 | 8425 | 100 | Minus |
| 2L | 23513712 | 2L | 16737142..16738277 | 1152..17 | 5680 | 100 | Minus |
| 2L | 23513712 | 2L | 16736456..16737080 | 1777..1153 | 3125 | 100 | Minus |
| 2L | 23513712 | 2L | 16733800..16734269 | 4243..3774 | 2350 | 100 | Minus |
| 2L | 23513712 | 2L | 16736081..16736396 | 2091..1776 | 1580 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib4 | 2656 | transib4 TRANSIB4 2656bp | 1161..1249 | 2883..2970 | 118 | 60.7 | Plus |
BO26480.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 10:20:06 Download gff for
BO26480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glu-RA | 96..4322 | 17..4245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:13 Download gff for
BO26480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glu-RA | 112..4338 | 17..4245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:11 Download gff for
BO26480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glu-RA | 112..4338 | 17..4245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:11 Download gff for
BO26480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16733798..16734267 | 3776..4245 | 99 | <- | Minus |
| 2L | 16734336..16736019 | 2092..3775 | 100 | <- | Minus |
| 2L | 16736081..16736394 | 1778..2091 | 100 | <- | Minus |
| 2L | 16736456..16737080 | 1153..1777 | 100 | <- | Minus |
| 2L | 16737142..16738277 | 17..1152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:13 Download gff for
BO26480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16733798..16734267 | 3776..4245 | 99 | <- | Minus |
| arm_2L | 16734336..16736019 | 2092..3775 | 100 | <- | Minus |
| arm_2L | 16736081..16736394 | 1778..2091 | 100 | <- | Minus |
| arm_2L | 16736456..16737080 | 1153..1777 | 100 | <- | Minus |
| arm_2L | 16737142..16738277 | 17..1152 | 100 | | Minus |
BO26480.pep Sequence
Translation from 16 to 4261
> BO26480.pep
MQKARPSKGTPKAAGGARQSGQFRVPQLTAQQQLRAQQQQEEEDAAVDAL
DDALIFDDEEGGTRIGDIYIPPPVPPHCSMESTGPRLIISKIVNRNFKSY
AGEVELGPFHQSFTAIIGPNGSGKSNVIDSMMFVFGCRANRIRCKRVSTL
IHSSSSYPNLRSCSVAVHFKQIVDKGDGTCEDVPDSSIVIERTAMSDNSS
YYQINDKRAQLKDVAKLLKKHHVDLEHNRFLILQGEVESIAMMKPKGQTE
NETGMLEYLEDIVGTQRYIRPLQQINQRVDQLTDDRTEKHNRCKLAEREM
KDLEQPFNEAVDYLKKENELVRTKSFHIQKIISIKKSKLEQYTQEHEACA
EELKTHDEGTAALKQSRAEKETIIRKEIEEYEALVKKREQIKKRLVTVES
AYTEIQSTMENTNKQRKKDKAQIEKNEKELEDLHKLPEKNQREIEDCNKK
LESLEVSKVTLNEELEKQQAELTKTTAPLTEKRLKLSDELVGLKEKVNTA
KGEVQVFESQLKILKQAETTESRKYETLKSSYEQSQKSLEEKVTRVDELK
ESIPRMKTEIASKSAEVDKMVKEERNLSMQCNKLRTEINERSSVMQAQRS
NNKVLDFLMRMKMEGKIPGILGRLGDLGGIDAKYDIAISTACGRLDNIVT
DNYETASAAIGALKEYNVGRATFITLDKIEHHRREANSRINTPENVPRLY
DLVKVEDDRVRTAFYFALRNTLVCDDLEQGTRIAYGRERYRVVTLRGEMI
EMTGTMSGGGSRPIRGKMGTQVRTKTAESADSSQISQKALEDMQIQAEEL
QARVNYCQEQQGSLEREIQTLKNGLQRDEAEYKRLAVSITSLEQQMASNL
KQCEAQRQRMLKKTTDERAVKEREEQIEAAKQELEQAQFAEQAVSSQIEE
IQNQYDTLRNESVKPVEAKIKKVNSQIEKLAANVRSLNVGLATADRNITK
ITGNNNNLRENIKAAEEKLKSLNEDRNKAKEKKEELEKEIEESEASIEGA
KSQSSDIKKEIDEITKEENKRNIERIEIDTKLQAAAGKMNKVKNDIPGWQ
AQLAPLKLNEIPGETEPQAPLKELNEEELEAETLEALQYKQTMLEEDLKT
KKPNLSCIKEFNEKRLVYLDRVRVLEDITSKRNEMRDKYEEVRKRRYKEF
MDGFSIITRKLKEMYQMITLGGDAELELVDSMDPFTEGVNFTVRPPKKSW
KYISNLSGGEKTLSSLALVFALHYYKPSPLYFMDEIDAALDFKNVSIVGH
YIKERTKNAQFIIVSLRVNMFELANFLVGIYKVSDCTDSITMLNYPPTLP
TQSPVVANSQYVGGTIEGDNTIAAENQDDTPTKKSQSPPSEQIVRLISEL
GRDTTFAPPLESTVRDTILAQNLKQAATEVAAQPSDATGRVTTDVSLASP
PSSPAILNVASFLDH
BO26480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| glu-PA | 1409 | CG11397-PA | 1..1409 | 1..1409 | 7087 | 100 | Plus |
| SMC1-PA | 1238 | CG6057-PA | 34..1215 | 96..1280 | 896 | 25.7 | Plus |
| SMC2-PA | 1179 | CG10212-PA | 1..1154 | 87..1277 | 619 | 22.6 | Plus |
| SMC3-PA | 1200 | CG9802-PA | 3..1172 | 89..1280 | 571 | 22.3 | Plus |
| zip-PH | 1964 | CG15792-PH | 1076..1896 | 203..1027 | 308 | 20.3 | Plus |
