Clone BO26505 Report

Search the DGRC for BO26505

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:265
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS28-RA
Protein status:BO26505.pep: Imported from assembly
Sequenced Size:616

Clone Sequence Records

BO26505.complete Sequence

616 bp assembled on 2010-07-01

GenBank Submission: KX800074

> BO26505.complete
GAAGTTATCAGTCGACATGTCGCTCTTGCAAAAACTAAGCAGATCTGGTG
TACCGATGGCTTCATTAACCTGTCGTTCCCGAATGCCAATGGTCATTCGA
CTTATCAGCGGTAACACAGAAAAACCGGCGGAGGAATCTACTCCCGCAGT
GAATACGGAAACGGCGGAGATTGGCAGCAGCAAGGGAGGATTCGCCCGTG
CCTTCGACAAGTACACGGCACCAGCCACGCCTCCACAGCTGCCGGAAGAC
AACCAGACCTTCGCCTCCCTGCTGCGCAACTCCAAATTAATTGATCTGGA
CAACGCCGAGGGCAAGGTGGTCAGTGGCAAGATCTTTCATGTGGTGGGCG
ATGATCTCTACATAGACTTTGGTTGGAAGTTTCACTGCGTCTGCAGTCGT
CCAACACGCAATGCCAGCGACTATGTGCGAGGAGCCCGTGTTCGACTGCG
CATCAAGGACTTGGAGTTGTCCACCAAGTTTCTGGGTTCGTCCAAGGATA
TTACCATTCTAGAGGCAGATTGCCATTTGCTGGGTCTCCTGTCCACGCCC
ACCCGCCAGTCGACGGCCAAAACAACGCCGAAAATCGAAGATATCCTAGC
AAGCTTTCTAGACCAT

BO26505.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS28-RA 585 CG5497-PA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS28-RA 691 CG5497-RA 75..657 16..598 2915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18614661..18614944 299..16 1405 99.6 Minus
2R 25286936 2R 18614244..18614427 598..415 920 100 Minus
2R 25286936 2R 18614482..18614603 417..296 610 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:02:36 has no hits.

BO26505.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:54 Download gff for BO26505.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS28-RA 74..655 17..600 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:07 Download gff for BO26505.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS28-RA 76..657 17..600 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:23 Download gff for BO26505.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS28-RA 76..657 17..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:23 Download gff for BO26505.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18614242..18614424 418..600 98 <- Minus
2R 18614482..18614603 296..417 100 <- Minus
2R 18614665..18614943 17..295 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:07 Download gff for BO26505.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14501747..14501929 418..600 98 <- Minus
arm_2R 14501987..14502108 296..417 100 <- Minus
arm_2R 14502170..14502448 17..295 100   Minus

BO26505.pep Sequence

Translation from 16 to 616

> BO26505.pep
MSLLQKLSRSGVPMASLTCRSRMPMVIRLISGNTEKPAEESTPAVNTETA
EIGSSKGGFARAFDKYTAPATPPQLPEDNQTFASLLRNSKLIDLDNAEGK
VVSGKIFHVVGDDLYIDFGWKFHCVCSRPTRNASDYVRGARVRLRIKDLE
LSTKFLGSSKDITILEADCHLLGLLSTPTRQSTAKTTPKIEDILASFLDH

BO26505.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS28-PA 194 CG5497-PA 1..194 1..194 991 100 Plus