BO26505.complete Sequence
616 bp assembled on 2010-07-01
GenBank Submission: KX800074
> BO26505.complete
GAAGTTATCAGTCGACATGTCGCTCTTGCAAAAACTAAGCAGATCTGGTG
TACCGATGGCTTCATTAACCTGTCGTTCCCGAATGCCAATGGTCATTCGA
CTTATCAGCGGTAACACAGAAAAACCGGCGGAGGAATCTACTCCCGCAGT
GAATACGGAAACGGCGGAGATTGGCAGCAGCAAGGGAGGATTCGCCCGTG
CCTTCGACAAGTACACGGCACCAGCCACGCCTCCACAGCTGCCGGAAGAC
AACCAGACCTTCGCCTCCCTGCTGCGCAACTCCAAATTAATTGATCTGGA
CAACGCCGAGGGCAAGGTGGTCAGTGGCAAGATCTTTCATGTGGTGGGCG
ATGATCTCTACATAGACTTTGGTTGGAAGTTTCACTGCGTCTGCAGTCGT
CCAACACGCAATGCCAGCGACTATGTGCGAGGAGCCCGTGTTCGACTGCG
CATCAAGGACTTGGAGTTGTCCACCAAGTTTCTGGGTTCGTCCAAGGATA
TTACCATTCTAGAGGCAGATTGCCATTTGCTGGGTCTCCTGTCCACGCCC
ACCCGCCAGTCGACGGCCAAAACAACGCCGAAAATCGAAGATATCCTAGC
AAGCTTTCTAGACCAT
BO26505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS28-RA | 585 | CG5497-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS28-RA | 691 | CG5497-RA | 75..657 | 16..598 | 2915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18614661..18614944 | 299..16 | 1405 | 99.6 | Minus |
2R | 25286936 | 2R | 18614244..18614427 | 598..415 | 920 | 100 | Minus |
2R | 25286936 | 2R | 18614482..18614603 | 417..296 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:02:36 has no hits.
BO26505.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:54 Download gff for
BO26505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS28-RA | 74..655 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:07 Download gff for
BO26505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS28-RA | 76..657 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:23 Download gff for
BO26505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS28-RA | 76..657 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:23 Download gff for
BO26505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18614242..18614424 | 418..600 | 98 | <- | Minus |
2R | 18614482..18614603 | 296..417 | 100 | <- | Minus |
2R | 18614665..18614943 | 17..295 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:07 Download gff for
BO26505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14501747..14501929 | 418..600 | 98 | <- | Minus |
arm_2R | 14501987..14502108 | 296..417 | 100 | <- | Minus |
arm_2R | 14502170..14502448 | 17..295 | 100 | | Minus |
BO26505.pep Sequence
Translation from 16 to 616
> BO26505.pep
MSLLQKLSRSGVPMASLTCRSRMPMVIRLISGNTEKPAEESTPAVNTETA
EIGSSKGGFARAFDKYTAPATPPQLPEDNQTFASLLRNSKLIDLDNAEGK
VVSGKIFHVVGDDLYIDFGWKFHCVCSRPTRNASDYVRGARVRLRIKDLE
LSTKFLGSSKDITILEADCHLLGLLSTPTRQSTAKTTPKIEDILASFLDH
BO26505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS28-PA | 194 | CG5497-PA | 1..194 | 1..194 | 991 | 100 | Plus |