BO26506.complete Sequence
1192 bp assembled on 2010-07-01
GenBank Submission: KX798208
> BO26506.complete
GAAGTTATCAGTCGACATGGAATATGTGCAGGAAAATAGAGGATTTACCA
ATATCGGCAATAGCTTTGGCTTCGTATGCAGAATTATAGAAAAGCAATGC
GGAATTCAACAATTGGGAGCTCTTGAAAAATACGAATTTGCCGAGCTACT
GAAGATTCTGAATGGCACAGAAAAGTTTCTGGCCTCCAAGTTCTTCTGCC
AACTGCCAGCGAATGTCGGCAGTTTTCGAGTTCTCCGACAGCTACAGGAA
CTTCGCATCCTGACGGCCACGCAGTACATCTTTAGCAAGGAGGACTCCGA
TCAACTGCAGGTGGACCTGATCATATTCCTGGAATCTGAGTTCGAACTTC
TCGCAAATGTTTTCTTTTCAGCGGCTTACGATGCTGAATCTGCGTTGAAG
CTAACCTTGATACTGACAAGCGCTTTGGGGAATCTCTATTCCGGCCTCGT
TGGCAATCCCAAGATATGCAGCTTGGCATATGTGGAGTTCTTGTGCAAAA
CCCTGCCAGATGAAGCGCTAAATGTTTGCATGAACATGCATTTAAGTACC
CTGTTGGATCTTCACCGATCGGAGAATGTAGACGAGGCATTCGCCAGCTT
TAGCGCCTGGATAAATGAGGGCGTCGACGAACTAACCTTTGTAAAGCACC
TTTGCGATAAGATGTTTGCTAGCCATCAGCAGGCAGCCCTTCAATATCTA
TTCAAACAGTCAAACACGGAAAACTTTAATCAGTGGAAGTTCTATCTAAT
ACTTGTGCAAACTATCGCAAGCGCAGCCAATCCTGAAACCACCGCATACA
TTAAAAAGTATCTGAAAAATAGACTTCTGCAAACTGCATCCACGGCTTCC
CTGGGATCCTTGCTTCATTTGCTGCTGACTGCAAGGGCTGCTTGTGCCTC
AACCATGGATGTTCGTGCTAATCTAGACAACTATGCGAAGTGGTACAAGC
AGAACATTGGTGAAATGACGTACATATTGGGCACGGAAAAGTTTCAGACA
ATCCTAAGGCTCTTGGAGGAGTCTTTACCATACGAAAAAGAGTTGCAATA
CCTGGAGATTCATGTGTCAATTGCCATTTCACCTGGTGGGCGGCTGGTTC
AGGCCTACAAAACTAAGTGCAGGGCTCATGCAGCTCAACTTAAATCGGTG
GCAAAGCGAAAGGCTTCCACAGACGCAAGCTTTCTAGACCAT
BO26506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30001-RA | 1161 | CG30001-PA | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30001-RA | 1327 | CG30001-RA | 75..1232 | 17..1174 | 5790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9821437..9821687 | 1057..807 | 1255 | 100 | Minus |
| 2R | 25286936 | 2R | 9821947..9822101 | 661..507 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 9821746..9821892 | 806..660 | 735 | 100 | Minus |
| 2R | 25286936 | 2R | 9822155..9822284 | 509..380 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 9821263..9821381 | 1174..1056 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 9822505..9822616 | 285..174 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 9822347..9822443 | 380..284 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 9822664..9822756 | 175..83 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 9822816..9822881 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:02:32 has no hits.
BO26506.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:52 Download gff for
BO26506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30001-RA | 154..1311 | 17..1176 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:06 Download gff for
BO26506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30001-RA | 75..1232 | 17..1176 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:21 Download gff for
BO26506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30001-RA | 75..1232 | 17..1176 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:21 Download gff for
BO26506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9821947..9822098 | 510..661 | 100 | <- | Minus |
| 2R | 9822155..9822283 | 381..509 | 100 | <- | Minus |
| 2R | 9822347..9822441 | 286..380 | 100 | <- | Minus |
| 2R | 9822505..9822614 | 176..285 | 100 | <- | Minus |
| 2R | 9822664..9822756 | 83..175 | 100 | <- | Minus |
| 2R | 9822816..9822881 | 17..82 | 100 | | Minus |
| 2R | 9821261..9821379 | 1058..1176 | 98 | <- | Minus |
| 2R | 9821437..9821687 | 807..1057 | 100 | <- | Minus |
| 2R | 9821746..9821890 | 662..806 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:06 Download gff for
BO26506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5708766..5708884 | 1058..1176 | 98 | <- | Minus |
| arm_2R | 5708942..5709192 | 807..1057 | 100 | <- | Minus |
| arm_2R | 5709251..5709395 | 662..806 | 100 | <- | Minus |
| arm_2R | 5709452..5709603 | 510..661 | 100 | <- | Minus |
| arm_2R | 5709660..5709788 | 381..509 | 100 | <- | Minus |
| arm_2R | 5709852..5709946 | 286..380 | 100 | <- | Minus |
| arm_2R | 5710010..5710119 | 176..285 | 100 | <- | Minus |
| arm_2R | 5710169..5710261 | 83..175 | 100 | <- | Minus |
| arm_2R | 5710321..5710386 | 17..82 | 100 | | Minus |
BO26506.pep Sequence
Translation from 16 to 1192
> BO26506.pep
MEYVQENRGFTNIGNSFGFVCRIIEKQCGIQQLGALEKYEFAELLKILNG
TEKFLASKFFCQLPANVGSFRVLRQLQELRILTATQYIFSKEDSDQLQVD
LIIFLESEFELLANVFFSAAYDAESALKLTLILTSALGNLYSGLVGNPKI
CSLAYVEFLCKTLPDEALNVCMNMHLSTLLDLHRSENVDEAFASFSAWIN
EGVDELTFVKHLCDKMFASHQQAALQYLFKQSNTENFNQWKFYLILVQTI
ASAANPETTAYIKKYLKNRLLQTASTASLGSLLHLLLTARAACASTMDVR
ANLDNYAKWYKQNIGEMTYILGTEKFQTILRLLEESLPYEKELQYLEIHV
SIAISPGGRLVQAYKTKCRAHAAQLKSVAKRKASTDASFLDH
BO26506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30001-PA | 386 | CG30001-PA | 1..386 | 1..386 | 1960 | 100 | Plus |
