Clone BO26528 Report

Search the DGRC for BO26528

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:265
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptListericin-RA
Protein status:BO26528.pep: Imported from assembly
Sequenced Size:397

Clone Sequence Records

BO26528.complete Sequence

397 bp assembled on 2010-07-01

GenBank Submission: KX799998

> BO26528.complete
GAAGTTATCAGTCGACATGAAACAGTACCTGGTGCTTGCCCTCGTCTTTG
CGGCCATTCTGGCCATGATCAGCGGCCATCCTCTGGAGGAACAAAAGATC
ACGCTGGAAGATGCTGAAGCACAGCCGGGAATCGATGATGGCACTGGAGT
TAGGGCCGCTCGTCACTTTGGCGGCGGCTTTGGCCGCGGAGGATATTGCT
GTGGAGGAGGCGGTGGCTTCCGGCGCGGTGGTTTCGGTGGCGGTGGTTAC
GGTGGCGGTGGTTACGGTGGCGGTGGCTATCCAGGTGGCGGCTTTGGCGG
ATATCCCAGAGGTGGATTTGGCGGCGGCAGTGCATCAGCATCGGCGTCAG
CTTCAGCCAGTTCCAGTTGGGGACGTAAAGCAAGCTTTCTAGACCAT

BO26528.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Listericin-RA 366 CG9080-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Listericin-RA 450 CG9080-RA 29..391 17..379 1815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11241804..11242166 379..17 1815 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:01:39 has no hits.

BO26528.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:33 Download gff for BO26528.complete
Subject Subject Range Query Range Percent Splice Strand
CG9080-RA 30..392 17..381 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:36 Download gff for BO26528.complete
Subject Subject Range Query Range Percent Splice Strand
Listericin-RA 29..391 17..381 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:56 Download gff for BO26528.complete
Subject Subject Range Query Range Percent Splice Strand
Listericin-RA 29..391 17..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:56 Download gff for BO26528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11241802..11242166 17..381 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:36 Download gff for BO26528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7129307..7129671 17..381 99   Minus

BO26528.pep Sequence

Translation from 16 to 397

> BO26528.pep
MKQYLVLALVFAAILAMISGHPLEEQKITLEDAEAQPGIDDGTGVRAARH
FGGGFGRGGYCCGGGGGFRRGGFGGGGYGGGGYGGGGYPGGGFGGYPRGG
FGGGSASASASASASSSWGRKASFLDH

BO26528.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Listericin-PA 121 CG9080-PA 1..121 1..121 660 100 Plus
CG9757-PB 127 CG9757-PB 1..109 1..103 201 47.7 Plus
CG9757-PA 127 CG9757-PA 1..109 1..103 201 47.7 Plus
CG7294-PA 127 CG7294-PA 1..105 1..119 198 44.4 Plus
CG17108-PA 342 CG17108-PA 250..337 37..119 196 55.9 Plus
CG7294-PA 127 CG7294-PA 54..123 51..119 148 51.4 Plus