BO26535.complete Sequence
595 bp assembled on 2010-07-01
GenBank Submission: KX798709
> BO26535.complete
GAAGTTATCAGTCGACATGACCATCAAAAATTCGACTTGCTTTCGACATA
TTTGGGTTTCCACAGATGACAAACGAATTGCCATTGAGGCACAAAAGTAT
GGTGCCATAATACATCATCGGCCTGAGAAATTCGCCAGAGACGACACTCC
TTCACTTCATGCCATTTCGGAGTTCCTAGATGTTCATAGAAGTATTCATG
ACTTTGCTCTATTCCAATGCACATCTGTATTCCTGAAAACCAAGTATATT
CAAGAGGCTGTTCGAAAGTTTGAGTCCCATGACTGTGTTTTTGCCGCTAA
GAGATCACATTATCTGCGATGGAAGGTGGTCGATGGTGAATTGATGCCAG
CGGAATTCGATTTGAGTGCCAGGCCAAGACGCCAAGATTGGCAGGGTGAT
ATTGTAGAGACAGGAATGTTTTACTTCTCGAGGAGGAAACTGGTGGACAG
TGGGCTACTGCAAAACAATAGGTGCTCCGTTGTGGAAATCGATGCCAAGG
ATAGTCTGGAAATTGACTCTAGCCACGATCTGACTCTAGCCAAATACATC
TTAAGTAGTGAAACAAAAACCGAGTTAGCAAGCTTTCTAGACCAT
BO26535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csas-RA | 564 | CG32220-PA | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csas-RA | 758 | CG32220-RA | 153..713 | 17..577 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19988072..19988347 | 577..302 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 19988401..19988605 | 303..99 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 19988662..19988743 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:01:49 has no hits.
BO26535.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:37 Download gff for
BO26535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csas-RA | 110..670 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:42 Download gff for
BO26535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csas-RA | 153..713 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:01 Download gff for
BO26535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csas-RA | 153..713 | 17..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:01 Download gff for
BO26535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19988401..19988605 | 99..303 | 100 | <- | Minus |
| 3L | 19988662..19988743 | 17..98 | 100 | | Minus |
| 3L | 19988070..19988345 | 304..579 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:42 Download gff for
BO26535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19981170..19981445 | 304..579 | 99 | <- | Minus |
| arm_3L | 19981501..19981705 | 99..303 | 100 | <- | Minus |
| arm_3L | 19981762..19981843 | 17..98 | 100 | | Minus |
BO26535.pep Sequence
Translation from 16 to 595
> BO26535.pep
MTIKNSTCFRHIWVSTDDKRIAIEAQKYGAIIHHRPEKFARDDTPSLHAI
SEFLDVHRSIHDFALFQCTSVFLKTKYIQEAVRKFESHDCVFAAKRSHYL
RWKVVDGELMPAEFDLSARPRRQDWQGDIVETGMFYFSRRKLVDSGLLQN
NRCSVVEIDAKDSLEIDSSHDLTLAKYILSSETKTELASFLDH
BO26535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csas-PA | 187 | CG32220-PA | 1..187 | 1..187 | 980 | 100 | Plus |
