BO26543.complete Sequence
883 bp assembled on 2010-07-01
GenBank Submission: KX799049
> BO26543.complete
GAAGTTATCAGTCGACATGAGTCAGTCTTGTATACCAGTGAGCGCAAAGA
TGTCGAAGGCAAAGAAGGTTTTGGATGAAGCCCGAGAAACTCACAATCCC
GAGTTGGATTTGGCCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGG
ACTGTTCAACATGTCCAACATCACGCGCTTGACCCTGTCCCACAACAAGA
TCAGCGTAATCAGTCCGGGAATCGCGAACCTACTGAATCTGGAGATCCTG
AACCTCTCGAACAACCAGCTGACCGAACTGCCCGTTTCGCTGTCGTCCAT
GCCAAAGCTACGCATCCTCAATGTGTCCATCAATCGGCTGATAAATCTTC
CTCGCGGCTTTGGAGCCTTTCCGGTGCTGGAAGTGCTCGACCTGTCCTAC
AACAATCTCAACGAACAGGTCCTGCCTGGTAATTTCTTTGGTATGGAGAC
ACTGCGTGCTCTGTATCTGGGCGACAATGACTTCGAGTATATACCGAAGG
AGGTGGGTCAGCTGAAGAATCTGCAGATACTCGGATTGCGTGACAACGAT
CTTCTGGAATTGCCCCGCGAAGTTGGGGATTTGGTGCGACTGCGGGAGCT
ACATATTCAAAACAATAGGCTGCAGGTGCTGCCACCAGAGATCGCCCAGT
TGGACCTACTGAGCAACAAGTCGGTCATGAAGATGGAGGAGAATCCCTGG
GTCAATCCCATCGCCGAGCAATATCTGCTGGGCATTAGTCACGTCATCGA
CTACCTCAAAACGGAGACCTATAAGATCATCTACAACCGCCACTTGCAAG
CAGGACGCAGTGGACCGCCGCCACCCAAAGCTGACAAAAGCAAGAAGGCC
TCTCGAATTCGCGCAGCAAGCTTTCTAGACCAT
BO26543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ics-RC | 852 | CG9031-PC | 1..849 | 17..865 | 4245 | 100 | Plus |
| ics-RB | 852 | CG9031-PB | 1..849 | 17..865 | 4245 | 100 | Plus |
| ics-RA | 852 | CG9031-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ics-RC | 1716 | CG9031-RC | 606..1454 | 17..865 | 4245 | 100 | Plus |
| ics-RB | 1063 | CG9031-RB | 25..873 | 17..865 | 4245 | 100 | Plus |
| ics-RA | 1335 | CG9031-RA | 297..1145 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13639860..13640481 | 777..156 | 3110 | 100 | Minus |
| 2L | 23513712 | 2L | 13641110..13641248 | 155..17 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 13639709..13639796 | 865..778 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:01:15 has no hits.
BO26543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:26 Download gff for
BO26543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 24..872 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:22 Download gff for
BO26543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 297..1145 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:45 Download gff for
BO26543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 297..1145 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:45 Download gff for
BO26543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13639707..13639796 | 778..867 | 97 | <- | Minus |
| 2L | 13639860..13640481 | 156..777 | 100 | <- | Minus |
| 2L | 13641110..13641248 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:22 Download gff for
BO26543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13639707..13639796 | 778..867 | 97 | <- | Minus |
| arm_2L | 13639860..13640481 | 156..777 | 100 | <- | Minus |
| arm_2L | 13641110..13641248 | 17..155 | 100 | | Minus |
BO26543.pep Sequence
Translation from 16 to 883
> BO26543.pep
MSQSCIPVSAKMSKAKKVLDEARETHNPELDLADKGLSSFEELPGLFNMS
NITRLTLSHNKISVISPGIANLLNLEILNLSNNQLTELPVSLSSMPKLRI
LNVSINRLINLPRGFGAFPVLEVLDLSYNNLNEQVLPGNFFGMETLRALY
LGDNDFEYIPKEVGQLKNLQILGLRDNDLLELPREVGDLVRLRELHIQNN
RLQVLPPEIAQLDLLSNKSVMKMEENPWVNPIAEQYLLGISHVIDYLKTE
TYKIIYNRHLQAGRSGPPPPKADKSKKASRIRAASFLDH
BO26543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ics-PC | 283 | CG9031-PC | 1..283 | 1..283 | 1434 | 100 | Plus |
| ics-PB | 283 | CG9031-PB | 1..283 | 1..283 | 1434 | 100 | Plus |
| ics-PA | 283 | CG9031-PA | 1..283 | 1..283 | 1434 | 100 | Plus |
| f-cup-PD | 474 | CG9611-PD | 40..253 | 30..218 | 257 | 33.3 | Plus |
| f-cup-PI | 522 | CG9611-PI | 88..301 | 30..218 | 257 | 33.3 | Plus |
| f-cup-PD | 474 | CG9611-PD | 104..299 | 28..227 | 225 | 34.7 | Plus |
| f-cup-PD | 474 | CG9611-PD | 129..329 | 30..225 | 183 | 28.1 | Plus |
