BO26545.complete Sequence
2611 bp assembled on 2010-07-15
GenBank Submission: KX798504
> BO26545.complete
GAAGTTATCAGTCGACATGTTGACCATGTTGTCCGTGAACCAAGATAACG
GTCCACACCGTGAGATGGCCGTCGATTGTCCGGACACGTTCATCGCACGC
AACAAGACGCCACCCCGATATCCGCCACCCCGTCCACCACAGCTCAATGG
GAATGCGAAGCCCGTACCGCCGCCACGTGATCATCTGCGGGTGGAGAAGG
ATGGTCGGCTGGTCAATTGCTCACCCGCACCACAGCTGCCGGATCGCAGG
GCGCCGGGAAATGCGAGCAGCGGCAGCAGCGGCGCCACAACGCATCCGCT
GCAGCATCAGCAGATCGCCCAGATTGTTGAGCCCACATTGGAGCAGCTGG
ACAGCATCAAGAAATACCAGGAGCAACTGCGCCGACGACGCGAGGAGGAG
GAGCGCATAGCGCAGCAAAATGAATTCCTGCGGAACAGTCTTCGTGGCTC
CAGGAAGCTGAAGGCGCTTCAGGATACGGCTACGCCCGGTAAAGCGGTTG
CCCAGCAGCAGCAGCAGGCAACGCTGGCCACCCAGGTGGTTGGCGTGGAG
AATGAGGCATATCTGCCCGACGAAGACCAGCCGCAGGCGGAACAGATCGA
TGGCTATGGCGAACTGATAGCGGCCCTTACCCGCCTGCAAAACCAGCTGA
GCAAGAGCGGACTGAGCACGCTGGCGGGTCGCGTTTCGGCCGCCCACAGT
GTCCTGGCCAGCGCCAGTGTGGCCCATGTCCTGGCCGCTCGCACCGCAGT
ACTGCAGCGACGACGTTCCCGCGTCTCTGGTCCACTGCATCACAGTTCCC
TCGGATTGCAGAAGGACATTGTGGAGCTGCTAACGCAATCGAATACGGCG
GCGGCCATCGAGCTGGGCAACCTGCTGACCAGCCATGAAATGGAGGGTCT
GCTACTGGCCCACGATCGCATTGCCAATCACACGGATGGCACGCCCTCGC
CAACGCCCACGCCCACTCCGGCAATTGGAGCGGCGACGGGATCGACACTC
AGCAGTCCGGTGGCTGGACCCAAGAGAAATCTAGGTATGGTGGTGCCACC
GCCCGTGGTACCACCGCCACTGGCGCAACGCGGAGCAATGCCACTGCCTC
GCGGGGAGTCGCCACCGCCGGTTCCCATGCCACCACTGGCTACAATGCCC
ATGTCCATGCCCGTTAATCTGCCGATGAGTGCGTGCTTTGGCACGCTAAA
CGATCAGAACGACAACATTCGTATCATCCAGATCGAGAAGTCAACGGAGC
CGCTGGGCGCCACAGTGCGCAACGAGGGTGAGGCGGTGGTCATCGGTAGG
ATTGTGCGTGGTGGAGCGGCGGAGAAGTCGGGACTGTTGCACGAAGGTGA
TGAGATACTGGAGGTCAACGGTCAGGAGTTGCGTGGCAAGACGGTGAACG
AAGTGTGCGCCCTGTTGGGCGCCATGCAAGGCACCCTGACCTTCCTGATC
GTCCCAGCGGGTAGTCCACCGTCCGTCGGCGTGATGGGCGGAACAACGGG
CAGTCAACTGGCCGGGTTGGGTGGAGCACATCGTGACACCGCCGTGTTGC
ACGTACGGGCGCATTTCGACTACGATCCAGAGGACGATCTGTATATACCC
TGCCGGGAGCTGGGCATCAGCTTCCAGAAGGGCGATGTACTGCACGTGAT
TAGCCGCGAGGATCCCAACTGGTGGCAGGCGTATCGCGAGGGCGAGGAGG
ACCAGACGCTGGCCGGTCTTATTCCTAGTCAGTCGTTCCAGCATCAGCGC
GAGACCATGAAGCTGGCCATTGCGGAGGAGGCGGGTCTGGCGCGATCCCG
CGGTAAGGACGGATCGGGCAGCAAAGGAGCCACGCTCCTGTGTGCGCGCA
AGGGTCGCAAAAAGAAGAAGAAGGCCAGCTCCGAGGCGGGATATCCTTTA
TACGCCACCACGGCGCCGGATGAAACGGATCCGGAGGAGATACTCACCTA
CGAGGAGGTGGCCTTGTACTATCCCCGCGCTACCCACAAGCGGCCCATCG
TCCTCATCGGCCCGCCCAACATTGGAAGACATGAGTTGCGCCAACGTCTG
ATGGCCGACTCGGAGCGTTTCTCCGCCGCAGTGCCACACACATCACGAGC
CCGCAGGGAGGGCGAAGTGCCCGGAGTGGACTACCACTTCATCACGCGAC
AGGCCTTTGAGGCGGATATTTTGGCGCGCCGCTTTGTGGAGCACGGTGAA
TATGAGAAGGCCTACTACGGCACATCACTGGAGGCCATACGCACGGTGGT
GGCCAGCGGCAAGATCTGTGTGCTCAACCTGCATCCGCAGAGCCTTAAGC
TGCTGCGCGCCTCTGACCTCAAGCCGTACGTGGTGCTGGTGGCGCCGCCC
AGCTTGGACAAGCTGCGCCAAAAGAAGCTGCGCAACGGCGAACCCTTCAA
GGAGGAAGAGCTCAAAGACATCATTGCCACGGCCAGGGATATGGAGGCCC
GTTGGGGTCACCTATTCGACATGATCATAATCAACAACGACACGGAGCGC
GCCTACCACCAACTGCTGGCCGAGATCAACTCGCTGGAACGCGAGCCCCA
ATGGGTGCCCGCCCAGTGGGTGCACAACAATCGCGACGAGTCAGCAAGCT
TTCTAGACCAT
BO26545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sdt-RF | 2580 | CG32717-PF | 1..2577 | 17..2593 | 12885 | 100 | Plus |
| sdt-RH | 2805 | CG32717-PH | 226..2802 | 17..2593 | 12885 | 100 | Plus |
| sdt-RP | 3522 | CG32717-PP | 943..3519 | 17..2593 | 12885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sdt-RF | 4482 | CG32717-RF | 922..3498 | 17..2593 | 12885 | 100 | Plus |
| sdt-RH | 4017 | CG32717-RH | 457..3033 | 17..2593 | 12885 | 100 | Plus |
| sdt-RP | 6968 | CG32717-RP | 2361..4937 | 17..2593 | 12885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8235881..8237169 | 602..1890 | 6445 | 100 | Plus |
| X | 23542271 | X | 8235586..8235821 | 368..603 | 1180 | 100 | Plus |
| X | 23542271 | X | 8227866..8228099 | 138..371 | 1170 | 100 | Plus |
| X | 23542271 | X | 8237231..8237428 | 1890..2087 | 990 | 100 | Plus |
| X | 23542271 | X | 8238250..8238443 | 2400..2593 | 970 | 100 | Plus |
| X | 23542271 | X | 8238006..8238189 | 2219..2402 | 920 | 100 | Plus |
| X | 23542271 | X | 8237810..8237942 | 2088..2220 | 665 | 100 | Plus |
| X | 23542271 | X | 8223955..8224047 | 50..142 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:48:52 has no hits.
BO26545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:53:16 Download gff for
BO26545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RG | 5028..7478 | 142..2595 | 99 | | Plus |
| sdt-RG | 3608..3727 | 22..141 | 100 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:35 Download gff for
BO26545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RP | 2366..4937 | 22..2595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:37:42 Download gff for
BO26545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RP | 2366..4937 | 22..2595 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:37:42 Download gff for
BO26545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8238252..8238443 | 2402..2595 | 98 | | Plus |
| X | 8223838..8223866 | 22..50 | 100 | -> | Plus |
| X | 8223956..8224047 | 51..142 | 100 | -> | Plus |
| X | 8227871..8228098 | 143..370 | 100 | -> | Plus |
| X | 8235589..8235820 | 371..602 | 100 | -> | Plus |
| X | 8235882..8237169 | 603..1890 | 100 | -> | Plus |
| X | 8237232..8237428 | 1891..2087 | 100 | -> | Plus |
| X | 8237810..8237941 | 2088..2219 | 100 | -> | Plus |
| X | 8238007..8238188 | 2220..2401 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:35 Download gff for
BO26545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8132285..8132476 | 2402..2595 | 98 | | Plus |
| arm_X | 8117871..8117899 | 22..50 | 100 | -> | Plus |
| arm_X | 8117989..8118080 | 51..142 | 100 | -> | Plus |
| arm_X | 8121904..8122131 | 143..370 | 100 | -> | Plus |
| arm_X | 8129622..8129853 | 371..602 | 100 | -> | Plus |
| arm_X | 8129915..8131202 | 603..1890 | 100 | -> | Plus |
| arm_X | 8131265..8131461 | 1891..2087 | 100 | -> | Plus |
| arm_X | 8131843..8131974 | 2088..2219 | 100 | -> | Plus |
| arm_X | 8132040..8132221 | 2220..2401 | 100 | -> | Plus |
BO26545.pep Sequence
Translation from 16 to 2611
> BO26545.pep
MLTMLSVNQDNGPHREMAVDCPDTFIARNKTPPRYPPPRPPQLNGNAKPV
PPPRDHLRVEKDGRLVNCSPAPQLPDRRAPGNASSGSSGATTHPLQHQQI
AQIVEPTLEQLDSIKKYQEQLRRRREEEERIAQQNEFLRNSLRGSRKLKA
LQDTATPGKAVAQQQQQATLATQVVGVENEAYLPDEDQPQAEQIDGYGEL
IAALTRLQNQLSKSGLSTLAGRVSAAHSVLASASVAHVLAARTAVLQRRR
SRVSGPLHHSSLGLQKDIVELLTQSNTAAAIELGNLLTSHEMEGLLLAHD
RIANHTDGTPSPTPTPTPAIGAATGSTLSSPVAGPKRNLGMVVPPPVVPP
PLAQRGAMPLPRGESPPPVPMPPLATMPMSMPVNLPMSACFGTLNDQNDN
IRIIQIEKSTEPLGATVRNEGEAVVIGRIVRGGAAEKSGLLHEGDEILEV
NGQELRGKTVNEVCALLGAMQGTLTFLIVPAGSPPSVGVMGGTTGSQLAG
LGGAHRDTAVLHVRAHFDYDPEDDLYIPCRELGISFQKGDVLHVISREDP
NWWQAYREGEEDQTLAGLIPSQSFQHQRETMKLAIAEEAGLARSRGKDGS
GSKGATLLCARKGRKKKKKASSEAGYPLYATTAPDETDPEEILTYEEVAL
YYPRATHKRPIVLIGPPNIGRHELRQRLMADSERFSAAVPHTSRARREGE
VPGVDYHFITRQAFEADILARRFVEHGEYEKAYYGTSLEAIRTVVASGKI
CVLNLHPQSLKLLRASDLKPYVVLVAPPSLDKLRQKKLRNGEPFKEEELK
DIIATARDMEARWGHLFDMIIINNDTERAYHQLLAEINSLEREPQWVPAQ
WVHNNRDESASFLDH
BO26545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sdt-PF | 859 | CG32717-PF | 1..859 | 1..859 | 4441 | 100 | Plus |
| sdt-PH | 934 | CG32717-PH | 76..934 | 1..859 | 4441 | 100 | Plus |
| sdt-PP | 1173 | CG32717-PP | 315..1173 | 1..859 | 4441 | 100 | Plus |
| sdt-PM | 1901 | CG32717-PM | 1080..1901 | 32..859 | 4208 | 99 | Plus |
| sdt-PN | 1292 | CG32717-PN | 475..1292 | 42..859 | 4206 | 99.9 | Plus |
| sdt-PM | 1901 | CG32717-PM | 729..905 | 1..179 | 242 | 36.8 | Plus |
