BO26546.complete Sequence
1139 bp assembled on 2011-06-29
> BO26546.complete
GAAGTTATCAGTCGACATGAAGTCTGTCATTCTATATCCATATGGACCGC
TAACCGGCGGCACACGTTGCTGTCGCATGTTGCATGCCAAAAATTTGGCC
ATAACAAGTGCAATTTACACAATTAATATATCACTCCTAATCGTACTGAT
ATACTCGTGGCGCATAAATGTCAATATGCATAAGTCGGCCGATCTGCAGG
ATGTCTACTACGGTGTGCAAATAGCATATTTTGCCATAATCGGCACACAA
ATGTCCATGATACTGCTGAGCATTGTGTTAATATTTGGAATATGTCGGGA
GAACCCAGGACTAATTGTACCCTGGATAATTGGCTATATAACATTTATGG
CCCTGGAAGCTGTCGCCATGGTCTACTCCAATGTCCTGCGCGACCATGTA
AATAAGCAATTCGACGCAATGTGCAAGGCCGAGGTGGCATTCTTTATTGC
TCGTGCACTGATAAATGTGCTGGCCATGTGGGGAGTGCTCCGTTTCTACA
ACTTGGTTCGTTCTGGAATCACATGGCGCGGACCAGAGGCCAAGACAGCC
ATCTTTGCGCCGATGTACAAGAGTGTTACTACGAATAAGCCGCACACATA
CACCTACAGCAAGCGGTCAAGGCGCCGCCATAGCATCGATTCGACTTCCG
GCGGATGCTGCGCCATCTTCGACTTTGACTTCGAGTACGACGATGATAAC
GACGACGACGACGATGAGGCTGCCTATGGCGATGGTCTGGATACGGAGGA
CGAAGTGGGCTACGACTACGATGATTACTACGATTACTACGACGACGACG
AGCTGGCGGAGCAGCAGCACTTGGGGCTGCAACAGGACGATGGTGACTGT
AGCATGTTGGGCGCTGGCAGGGCAACCAGATCGCGCTCCAAGCCAAGATC
CGCTGTGGTCAAGGTCAAGGGTCAGCGGAGCGGAAGTCGCCGCACCAACA
ACAACATCCGCAGCGTGCTGATCAACAAGCGGCACAACAAGTACAAAATC
GCGCGGCCCCAAACGCAGCTGGAGGTCATCAACGAGTCGGAGAAGAGCGC
GGGGAGCGGCAGCGATGAGAATGATTCGCTTTTGGTGGCCTATGACAGCA
GTTCGTCGCTGGCGTCAGTTGCAAGCTTTCTAGACCCAT
BO26546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32204-RB | 1107 | CG32204-PB | 1..1104 | 17..1120 | 5505 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32204-RB | 2989 | CG32204-RB | 494..1597 | 17..1120 | 5505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18923811..18924394 | 1120..537 | 2905 | 99.8 | Minus |
| 3L | 28110227 | 3L | 18928150..18928258 | 406..298 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 18932758..18932865 | 124..17 | 540 | 100 | Minus |
| 3L | 28110227 | 3L | 18930589..18930678 | 214..125 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 18930064..18930151 | 299..212 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 18924703..18924775 | 539..467 | 365 | 100 | Minus |
| 3L | 28110227 | 3L | 18926178..18926241 | 468..405 | 320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2523 | 935..1000 | 130 | 69.6 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 5326..5410 | 191..105 | 123 | 63.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2513 | 940..1012 | 115 | 67.9 | Plus |
BO26546.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:29 Download gff for
BO26546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32204-RB | 492..1595 | 17..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:22 Download gff for
BO26546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32204-RB | 492..1595 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:51 Download gff for
BO26546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32204-RB | 494..1597 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:46 Download gff for
BO26546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32204-RB | 494..1597 | 17..1122 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:46 Download gff for
BO26546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18923807..18924392 | 539..1122 | 99 | <- | Minus |
| 3L | 18924704..18924775 | 467..538 | 100 | <- | Minus |
| 3L | 18926180..18926239 | 407..466 | 100 | <- | Minus |
| 3L | 18928150..18928257 | 299..406 | 100 | <- | Minus |
| 3L | 18930065..18930150 | 213..298 | 100 | <- | Minus |
| 3L | 18930591..18930678 | 125..212 | 100 | <- | Minus |
| 3L | 18932758..18932865 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:51 Download gff for
BO26546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18923691..18923778 | 125..212 | 100 | <- | Minus |
| arm_3L | 18925858..18925965 | 17..124 | 100 | | Minus |
| arm_3L | 18916907..18917492 | 539..1122 | 99 | <- | Minus |
| arm_3L | 18917804..18917875 | 467..538 | 100 | <- | Minus |
| arm_3L | 18919280..18919339 | 407..466 | 100 | <- | Minus |
| arm_3L | 18921250..18921357 | 299..406 | 100 | <- | Minus |
| arm_3L | 18923165..18923250 | 213..298 | 100 | <- | Minus |
BO26546.pep Sequence
Translation from 16 to 1138
> BO26546.pep
MKSVILYPYGPLTGGTRCCRMLHAKNLAITSAIYTINISLLIVLIYSWRI
NVNMHKSADLQDVYYGVQIAYFAIIGTQMSMILLSIVLIFGICRENPGLI
VPWIIGYITFMALEAVAMVYSNVLRDHVNKQFDAMCKAEVAFFIARALIN
VLAMWGVLRFYNLVRSGITWRGPEAKTAIFAPMYKSVTTNKPHTYTYSKR
SRRRHSIDSTSGGCCAIFDFDFEYDDDNDDDDDEAAYGDGLDTEDEVGYD
YDDYYDYYDDDELAEQQHLGLQQDDGDCSMLGAGRATRSRSKPRSAVVKV
KGQRSGSRRTNNNIRSVLINKRHNKYKIARPQTQLEVINESEKSAGSGSD
ENDSLLVAYDSSSSLASVASFLDP
BO26546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32204-PB | 368 | CG32204-PB | 1..368 | 1..368 | 1919 | 100 | Plus |
