BO26561.complete Sequence
2683 bp assembled on 2010-08-03
GenBank Submission: KX796854
> BO26561.complete
GAAGTTATCAGTCGACATGGGCTTGCCGCTTGACGAAAACAGTCGTGATC
TCATACGCAGTTTCCACACACTCTGCTTAAATCTGGAAGAGCAACTGCCG
CTGTTTGAACTAGAAACCAACGCTACGACAAAAATAAAGGCCAATACAAA
AGATCGCGTACCCAAACACATCGGGCATATACGCTATTTGCGACTCACAG
ATACTTATCGCAACAATAAACAAAGCTCCTCGGAACCCTCGGTCGTCGAC
CAGAGAAGAGGCAGACTCGAAATGGATGCCTCCGGCGCCGCCACAATGGC
AGTCCTCTCCAGCCTGCTTGTGTTTTTGGCCCTCTCGTCCAGTCTGTGCT
CAGCCGGCACCCTCAACGCCCGTCCTGCGTTTCCCGTACAATCCGGCGAA
ATTCAGCCCAGCGGCCAGAACAGCAAGCAGGCAGCCAGACGCGTGATGCA
TCCTTCCTTCGCCAACGCCGGCCGTACTCCCGGCCTGGAAATCTGGCGCA
TCGAGAATTTTGAGCCCGTTATATATCCCAAAACTAACTACGGCAAATTT
TACACTGGGGACTCGTTTATTGTTCTTAATACAATTGAAAACAAGAAAGA
CAAAAAACTGTCTTGGGATGTGCACTTCTGGCTGGGATTGGAGACCTCGA
CCGATGAGGCCGGAGCTGCAGCTATTCTCACCGTCCAGTTGGATGACTTG
CTGAATGGTGGCCCTGTTCAACATCGCGAGGTGCAGGACCACGAGTCCCA
GCTGTTTCTGAGCTATTTCAAAAACGGCATTCGCTATGAACAGGGCGGCG
TCGGAACTGGCTTCAAGCATGTAGAGACAAACGCCCAAGGAGAAACACGA
CTATTCCAGGTCAAGGGCAAGCGAAACGTGCGCGTCCGACAGGTGAATCT
TTCCGTGTCGTCGATGAACACGGGTGATTGCTTTATTTTGGATGCCGGCA
GCGATATATATGTCTACGTAGGCTCCCAGGCCAAGCGCGTTGAGAAGCTA
AAGGCTATCAGCGCTGCAAACCAGATCAGGGACCAGGATCATAACGGACG
AGCCCGTGTTCAGATCGTCGACGACTTCAGCACTGATGCCGATAAGCAGC
ACTTCTTCGACGTGCTGGGATCGGGCTCTGCTGACCAGGTGCCCGATGAG
TCAACTGCTGACGAAGATAGTGCCTTCGAGAGGACAGATGCCGCAGCGGT
TTCTCTCTACAAGGTCAGCGACGCCAGCGGCAAGCTGAAGGTGGACATCA
TTGGACAAAAACCACTCACTCAGGCTATGCTCGACACTCGCGAGTGCTTT
ATTTTGGATACTGGATCTGGCATTTTTGTGTGGGTCGGAAAAGGCGCCAC
TCAGAAGGAGAAGACGGACGCCATGGCCAAGGCGCAGGAGTTCCTACGCA
CCAAGAAGTACCCGGCCTGGACCCAAATTCACCGCATCGTAGAGGGCTCC
GAGTCCGCCCCATTTAAGCAGTACTTTGACACCTGGCGTGATGCTGGAAT
GTCCCATAGTCGCCTTATTCGCTCGGCTCTGGGTATCGGCTCCGATGAAT
TATTAAACGATGACGAAATCGACTCCGTGGTGACTCAGCTAAAGAAGAGC
GGTGGTCGTGCCTTTGGGTTCATGCCGGATCACGGTCAGAACGTTATTGA
AACCATCACACAGTACGTTGCAAAGCCTGGTTCCGATGAGATCGTGGTCA
GCACCGTTCCCTTCGATGAGAAACTTCCTCTTTTGGGATTTGCCTCTTAT
GTGCTCACTTACAACTACGAGGCTAACAACGGGGACACTGGTTCTCTAAC
CTATGTGTGGCATGGAGTAAAGGCCTCTGCTGCCGCTAGGAAACGTGCTT
TTGAGGAGGGTCTAGTAGGTTCCAAGGATGGTCTTCTTGTCCAGACCAAT
CAGGGCCACGAGCCGCGCCACTTCTACAAGATATTTAAGGGGAAGTTATT
AACATCCTTTACTGCACTTCCGGTGACGGCGCAGCTTTTCCGCATTCGCG
GCACCGTCGAAAGTGATGTTCATGCTAGTGAGGTGGCCGCCGACAGCTCA
TCTTTGGCCTCAAGTGATGCCTTCGTCCTTCATTCGGGAAAGTCCCACAA
AATCTACATTTGGAATGGCTTGGGCGCATCTGCCTTCGAAAAACAAGCAG
CGGTTGATCGCTTTTCTGACTACTGGGACGACGTTGAGCTCGAGCAGGTG
GAGGAGGGTGCCGAGCCAGATGAGTTCTGGGAGGAATTAAACGGCGAAGG
CCAGTACGACCGCAGCTTGGGTGACGATGGAGCTCCACTGCTGGAGTCGC
GCCTTTTCCACTGTCATCTGAGCTCTGGTGGATTTTTGAAGGTTGAAGAA
GTTGCTCAATACGAGCAAGAGGACTTGGACTCGGACGACATAATGCTACT
GGATGCTGGCGATGAGATCTACCTTTGGGTTGGCTATGGCGTGTCTGAGG
AGGAAAATGGGAAGCTTCTGGACACGGCAAAGCTTTACTTTAATTTAGAG
CCTACCGCCCGCTCCTTCGACACGGTGAGCATCATTCGCGTCCCCCAGGG
CAAGGAACCAAGGGTTTTCAAACGCATGTTCCCCAACTGGGACGATAATT
ATTGGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGAT
GCCAACAATGAAGTCGCAAGCTTTCTAGACCAT
BO26561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gel-RJ | 2397 | CG1106-PJ | 1..2394 | 272..2665 | 11970 | 100 | Plus |
| Gel-RF | 2397 | CG1106-PF | 1..2394 | 272..2665 | 11970 | 100 | Plus |
| Gel-RD | 2397 | CG1106-PD | 1..2394 | 272..2665 | 11970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gel-RJ | 2897 | CG1106-RJ | 126..2774 | 17..2665 | 13245 | 100 | Plus |
| Gel-RD | 2940 | CG1106-RD | 212..2817 | 60..2665 | 13030 | 100 | Plus |
| Gel-RB | 2836 | CG1106-RB | 109..2713 | 61..2665 | 13025 | 100 | Plus |
| Gel-RD | 2940 | CG1106-RD | 126..169 | 17..60 | 220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4238818..4240528 | 776..2486 | 8540 | 99.9 | Plus |
| 3R | 32079331 | 3R | 4236549..4236804 | 57..312 | 1280 | 100 | Plus |
| 3R | 32079331 | 3R | 4238570..4238766 | 581..777 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 4237622..4237817 | 310..505 | 980 | 100 | Plus |
| 3R | 32079331 | 3R | 4240587..4240714 | 2481..2608 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 4238301..4238377 | 504..580 | 385 | 100 | Plus |
| 3R | 32079331 | 3R | 4240876..4240934 | 2607..2665 | 295 | 100 | Plus |
| 3R | 32079331 | 3R | 4236105..4236148 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:53:48 has no hits.
BO26561.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 14:59:05 Download gff for
BO26561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gel-RH | 197..2845 | 17..2667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:50 Download gff for
BO26561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gel-RJ | 126..2774 | 17..2667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:12 Download gff for
BO26561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gel-RJ | 126..2774 | 17..2667 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:12 Download gff for
BO26561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4236105..4236148 | 17..60 | 100 | -> | Plus |
| 3R | 4236553..4236804 | 61..312 | 100 | -> | Plus |
| 3R | 4237625..4237817 | 313..505 | 100 | -> | Plus |
| 3R | 4238303..4238377 | 506..580 | 100 | -> | Plus |
| 3R | 4238570..4238765 | 581..776 | 100 | -> | Plus |
| 3R | 4238819..4240524 | 777..2482 | 100 | -> | Plus |
| 3R | 4240589..4240714 | 2483..2608 | 100 | -> | Plus |
| 3R | 4240878..4240934 | 2609..2667 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:50 Download gff for
BO26561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 61827..61870 | 17..60 | 100 | -> | Plus |
| arm_3R | 62275..62526 | 61..312 | 100 | -> | Plus |
| arm_3R | 63347..63539 | 313..505 | 100 | -> | Plus |
| arm_3R | 64025..64099 | 506..580 | 100 | -> | Plus |
| arm_3R | 64292..64487 | 581..776 | 100 | -> | Plus |
| arm_3R | 64541..66246 | 777..2482 | 100 | -> | Plus |
| arm_3R | 66311..66436 | 2483..2608 | 100 | -> | Plus |
| arm_3R | 66600..66656 | 2609..2667 | 96 | | Plus |
BO26561.pep Sequence
Translation from 16 to 2683
> BO26561.pep
MGLPLDENSRDLIRSFHTLCLNLEEQLPLFELETNATTKIKANTKDRVPK
HIGHIRYLRLTDTYRNNKQSSSEPSVVDQRRGRLEMDASGAATMAVLSSL
LVFLALSSSLCSAGTLNARPAFPVQSGEIQPSGQNSKQAARRVMHPSFAN
AGRTPGLEIWRIENFEPVIYPKTNYGKFYTGDSFIVLNTIENKKDKKLSW
DVHFWLGLETSTDEAGAAAILTVQLDDLLNGGPVQHREVQDHESQLFLSY
FKNGIRYEQGGVGTGFKHVETNAQGETRLFQVKGKRNVRVRQVNLSVSSM
NTGDCFILDAGSDIYVYVGSQAKRVEKLKAISAANQIRDQDHNGRARVQI
VDDFSTDADKQHFFDVLGSGSADQVPDESTADEDSAFERTDAAAVSLYKV
SDASGKLKVDIIGQKPLTQAMLDTRECFILDTGSGIFVWVGKGATQKEKT
DAMAKAQEFLRTKKYPAWTQIHRIVEGSESAPFKQYFDTWRDAGMSHSRL
IRSALGIGSDELLNDDEIDSVVTQLKKSGGRAFGFMPDHGQNVIETITQY
VAKPGSDEIVVSTVPFDEKLPLLGFASYVLTYNYEANNGDTGSLTYVWHG
VKASAAARKRAFEEGLVGSKDGLLVQTNQGHEPRHFYKIFKGKLLTSFTA
LPVTAQLFRIRGTVESDVHASEVAADSSSLASSDAFVLHSGKSHKIYIWN
GLGASAFEKQAAVDRFSDYWDDVELEQVEEGAEPDEFWEELNGEGQYDRS
LGDDGAPLLESRLFHCHLSSGGFLKVEEVAQYEQEDLDSDDIMLLDAGDE
IYLWVGYGVSEEENGKLLDTAKLYFNLEPTARSFDTVSIIRVPQGKEPRV
FKRMFPNWDDNYWQNQPSYEDMKQLVIDANNEVASFLDH
BO26561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gel-PJ | 798 | CG1106-PJ | 1..798 | 86..883 | 4143 | 100 | Plus |
| Gel-PF | 798 | CG1106-PF | 1..798 | 86..883 | 4143 | 100 | Plus |
| Gel-PD | 798 | CG1106-PD | 1..798 | 86..883 | 4143 | 100 | Plus |
| Gel-PB | 798 | CG1106-PB | 1..798 | 86..883 | 4143 | 100 | Plus |
| Gel-PK | 786 | CG1106-PK | 3..786 | 100..883 | 4080 | 100 | Plus |
