Clone BO26575 Report

Search the DGRC for BO26575

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:265
Well:75
Vector:pDNR-Dual
Associated Gene/Transcripte(y)1-RA
Protein status:BO26575.pep: Imported from assembly
Sequenced Size:868

Clone Sequence Records

BO26575.complete Sequence

868 bp assembled on 2010-07-01

GenBank Submission: KX797980

> BO26575.complete
GAAGTTATCAGTCGACATGAGCGCAGAGAAGTCCGATAAGGCCAAGATCA
GTGCCCAAATCAAGCACGTGCCGAAGGACGCGCAGGTGATCATGTCCATC
CTGAAGGAGCTGAATGTCCAGGAGTACGAGCCGCGCGTGGTCAACCAACT
GCTGGAGTTCACCTTCCGCTATGTAACCTGCATTCTGGACGACGCCAAGG
TGTACGCCAACCATGCGCGCAAGAAGACCATCGACTTGGACGACGTGCGT
CTGGCCACCGAGGTTACGCTGGACAAGAGCTTCACCGGGCCGTTGGAGCG
CCACGTTCTAGCCAAGGTGGCCGACGTGCGCAACAGCATGCCCCTGCCAC
CCATTAAGCCGCACTGCGGTCTCCGACTGCCGCCCGACCGCTACTGTCTC
ACCGGCGTCAACTACAAACTGCGGGCCACTAATCAGCCCAAGAAAATGAC
CAAGTCGGCGGTGGAGGGCCGTCCACTGAAGACCGTCGTTAAGCCCGTCT
CCAGCGCCAATGGTCCGAAGAGGCCACACTCCGTGGTGGCCAAGCAGCAG
GTGGTGACCATTCCCAAGCCCGTCATCAAGTTTACCACCACTACGACAAC
GAAAACGGTGGGCAGCTCCGGCGGATCTGGGGGCGGCGGTGGTCAGGAGG
TTAAGAGCGAGAGCACCGGCGCCGGCGGAGATCTCAAGATGGAGGTGGAC
AGCGATGCGGCGGCCGTGGGCAGCATCGCTGGCGCATCCGGTTCGGGAGC
AGGAAGTGCCAGCGGAGGAGGAGGAGGAGGAGGATCATCTGGCGTTGGAG
TGGCCGTCAAGCGGGAACGTGAGGAGGAGGAGTTTGAGTTTGTGACCAAC
GCAAGCTTTCTAGACCAT

BO26575.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)1-RA 837 CG6474-PA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)1-RA 1124 CG6474-RA 99..932 17..850 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17842474..17843156 168..850 3415 100 Plus
X 23542271 X 17842259..17842410 17..168 760 100 Plus
Blast to na_te.dros performed 2014-11-28 02:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Doc4-element 2791 Doc4-element DOC4 2791bp 1457..1487 800..770 110 83.9 Minus

BO26575.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:17 Download gff for BO26575.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 85..918 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:08 Download gff for BO26575.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 99..932 17..852 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:31 Download gff for BO26575.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 99..932 17..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:31 Download gff for BO26575.complete
Subject Subject Range Query Range Percent Splice Strand
X 17842259..17842409 17..167 100 -> Plus
X 17842474..17843156 168..852 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:08 Download gff for BO26575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17736292..17736442 17..167 100 -> Plus
arm_X 17736507..17737189 168..852 99   Plus

BO26575.pep Sequence

Translation from 16 to 868

> BO26575.pep
MSAEKSDKAKISAQIKHVPKDAQVIMSILKELNVQEYEPRVVNQLLEFTF
RYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAK
VADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKLRATNQPKKMTKSAVE
GRPLKTVVKPVSSANGPKRPHSVVAKQQVVTIPKPVIKFTTTTTTKTVGS
SGGSGGGGGQEVKSESTGAGGDLKMEVDSDAAAVGSIAGASGSGAGSASG
GGGGGGSSGVGVAVKREREEEEFEFVTNASFLDH

BO26575.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)1-PA 278 CG6474-PA 1..278 1..278 1413 100 Plus