BO26588.complete Sequence
1945 bp assembled on 2010-07-15
GenBank Submission: KX800150
> BO26588.complete
GAAGTTATCAGTCGACATGGGCTGCGTCTTTGAAGCGGCCAAAGAGCAGC
CCCACAAACCGAGAAGCAGGCAACTGAGGCGCAACCAATGCCGTGGAAAA
GCGGAAAAAGCAGCAGCGGGGACCAGAGGCAAGGTCGCTGTCAGAGGAAA
CAACGACAAGCCAGCTGAGGACATCAAAATCAAGGATAACTATCAACAAA
ACCATAAAACGCAAACCGAAACACAAACAGAAGTAGCAGCAGTAGTAGCA
ATAGCAACAGACGCAGGAGCAGAAACAGAAACTGAAACAGAGGCTGAGGC
CCAAAAAGAGCCAGCAACCGGGCCCGAACATCTGAAGGCGGCGGCTCAAG
TGCTTTTAACGATACGGCAGGCACGTCAGGAGAACAACAAGCACAGTAGT
AGTCAAGTGGCTGAAACGCACAAGGACGAAGGCGAGGACGCGTTGGCGCG
GCAAGGATCCATTGTCGATACGGCGGCGGGCAGAATCGGAATCGATATTG
CGGCAACAACGATTCAAGTCGCCGAGCGGCATGAGGATGGGCAGCATTGG
CAGCAACACAATGTCCGCCGGCGGAGGCGCCAGCCAGATCCTGCAGCGCA
TCCTGCAAGCATCACCAAACTTTCGGCAATATCCCTGCATTTTCACGCCC
TCGCCGCCCTAGCGAAAACGCTCCAAAAGCACGAGGACCTGAGTCCTGTC
CAGGATCGCCAGCCCCTAGCGTACCGGGCGTGGCAAGAACATCCGTATGC
CGAGACCCAAATGCCCGCCACCATGTCAGCGGCCATCATTGCGAATGTCG
GCGCTACTGCAGCGGCCACCTCGGCAGCCGCCTTCCAGTATCTCGGCCAG
CACTACAAGCACTACAGCCAGTCGATCAGCTTCTACGCCGCCTCCAGTGT
GCTCCTGATGCTTTGTTATCTGACCACCGCGTCCACGGCAGCTGCCACGC
AGTCGGAGACGGGTGCCCTCGACAAGCATCCCATTCATGGCATCGATTGG
TCGAAATTTGATGAGTCCAGTTCGGATAAGGAAATATTAGATTTACTGCT
TGAGAAGAAGCGCTACGATAAACGATTACTGCCGCCTGTAAATGATGAAG
ACTTTTGCTGTGGCTTGCAATCGCCCGATATGGCAACTAATCAAAATGCA
CGGAGACCACACAATCGCGGCACTCTGACGGTGAACGTGAACGTGCTGCT
CCTGAGCTTAGCATCGCCCGACGAAAGCAGTTTGAAATACGAGGTTGAAT
TTCTGCTGAACCAGCAATGGAACGATCCGCGACTGCAATATGGCAATAAG
TCTCATTATGACTTCTTAAATGCTCTGCATCATCATGATAGCATCTGGAC
GCCGGATACGTATTTCATTATGCATGGCGATTTCAAGGATCCCATCATAC
CAATGCATTTCGCTTTAAGAATATTTCGGAACGGGACCATTACGTACGCA
ATGAGACGTCACCTGATCTTATCCTGCCAGGGAAGTCTTCATATATTTCC
ATTCGATGACCCCAAGTGTTCCTTCTCCATGGAGAGCATTTCCTACGAGG
AGGCCCAAATCAAGTACGTCTGGAAAAACGATGAGGACACTCTGCGGAAG
AGTCCTTCGCTGACCACATTGAACGCGTACTTAATCAAGAATCAAACGAC
GGCCTGCGATCAGAACAGCTGGAGAGGTAAGTCATTGGGATCGCAATTGC
CAGTAATCGAATGCCAATCACTTCATTTGCTTATACTTTGTATTAGCCAA
AGAAATTACAACCGGGAAATGTTTTGCTCTTTAGTAATCGTAGTGTTTTT
GATGGTAAACTGGTATTTACTTTGTACAACATACAAAAACGGCAAATTCC
ATACAATTATTTTAGGTTTTTTCGTGCAAAACGGACCTTCTCAGTTTAGT
ACTCCATTCTTTGGCTTGGCTTTAAAAGCAAGCTTTCTAGACCAT
BO26588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pHCl-RC | 1914 | CG44099-PC | 1..1911 | 17..1927 | 9555 | 100 | Plus |
| pHCl-RN | 2937 | CG44099-PN | 1..1664 | 17..1680 | 8320 | 100 | Plus |
| pHCl-RH | 2289 | CG44099-PH | 1..1664 | 17..1680 | 8320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pHCl-RC | 3361 | CG44099-RC | 517..2429 | 15..1927 | 9565 | 100 | Plus |
| pHCl-RN | 6629 | CG44099-RN | 517..2182 | 15..1680 | 8330 | 100 | Plus |
| pHCl-RH | 3247 | CG44099-RH | 522..2187 | 15..1680 | 8330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15869830..15870799 | 984..15 | 4850 | 100 | Minus |
| 3L | 28110227 | 3L | 15864351..15864739 | 1927..1539 | 1945 | 100 | Minus |
| 3L | 28110227 | 3L | 15867266..15867487 | 1455..1234 | 1110 | 100 | Minus |
| 3L | 28110227 | 3L | 15868559..15868647 | 1094..1006 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 15865758..15865842 | 1538..1454 | 425 | 100 | Minus |
| 3L | 28110227 | 3L | 15867982..15868058 | 1170..1094 | 385 | 100 | Minus |
| 3L | 28110227 | 3L | 15867555..15867620 | 1234..1169 | 330 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8046..8084 | 228..266 | 114 | 76.9 | Plus |
BO26588.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:53:28 Download gff for
BO26588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pHCl-RC | 519..2425 | 17..1923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:45 Download gff for
BO26588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pHCl-RC | 519..2425 | 17..1923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:38:28 Download gff for
BO26588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pHCl-RC | 519..2425 | 17..1923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:38:28 Download gff for
BO26588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15869248..15869268 | 985..1005 | 100 | <- | Minus |
| 3L | 15864355..15864739 | 1539..1923 | 100 | <- | Minus |
| 3L | 15865758..15865840 | 1456..1538 | 100 | <- | Minus |
| 3L | 15867266..15867486 | 1235..1455 | 100 | <- | Minus |
| 3L | 15867555..15867619 | 1170..1234 | 100 | <- | Minus |
| 3L | 15867983..15868057 | 1095..1169 | 100 | <- | Minus |
| 3L | 15868559..15868647 | 1006..1094 | 100 | <- | Minus |
| 3L | 15869830..15870797 | 17..984 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:45 Download gff for
BO26588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15857455..15857839 | 1539..1923 | 100 | <- | Minus |
| arm_3L | 15858858..15858940 | 1456..1538 | 100 | <- | Minus |
| arm_3L | 15860366..15860586 | 1235..1455 | 100 | <- | Minus |
| arm_3L | 15860655..15860719 | 1170..1234 | 100 | <- | Minus |
| arm_3L | 15861083..15861157 | 1095..1169 | 100 | <- | Minus |
| arm_3L | 15861659..15861747 | 1006..1094 | 100 | <- | Minus |
| arm_3L | 15862348..15862368 | 985..1005 | 100 | <- | Minus |
| arm_3L | 15862930..15863897 | 17..984 | 100 | | Minus |
BO26588.pep Sequence
Translation from 16 to 1945
> BO26588.pep
MGCVFEAAKEQPHKPRSRQLRRNQCRGKAEKAAAGTRGKVAVRGNNDKPA
EDIKIKDNYQQNHKTQTETQTEVAAVVAIATDAGAETETETEAEAQKEPA
TGPEHLKAAAQVLLTIRQARQENNKHSSSQVAETHKDEGEDALARQGSIV
DTAAGRIGIDIAATTIQVAERHEDGQHWQQHNVRRRRRQPDPAAHPASIT
KLSAISLHFHALAALAKTLQKHEDLSPVQDRQPLAYRAWQEHPYAETQMP
ATMSAAIIANVGATAAATSAAAFQYLGQHYKHYSQSISFYAASSVLLMLC
YLTTASTAAATQSETGALDKHPIHGIDWSKFDESSSDKEILDLLLEKKRY
DKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRGTLTVNVNVLLLSLAS
PDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYF
IMHGDFKDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPK
CSFSMESISYEEAQIKYVWKNDEDTLRKSPSLTTLNAYLIKNQTTACDQN
SWRGKSLGSQLPVIECQSLHLLILCISQRNYNREMFCSLVIVVFLMVNWY
LLCTTYKNGKFHTIILGFFVQNGPSQFSTPFFGLALKASFLDH
BO26588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pHCl-PC | 637 | CG44099-PC | 1..637 | 1..637 | 3344 | 100 | Plus |
| pHCl-PN | 978 | CG44099-PN | 1..554 | 1..554 | 2904 | 100 | Plus |
| pHCl-PG | 681 | CG44099-PG | 1..554 | 1..554 | 2904 | 100 | Plus |
| pHCl-PF | 779 | CG44099-PF | 1..554 | 1..554 | 2904 | 100 | Plus |
| pHCl-PE | 762 | CG44099-PE | 1..554 | 1..554 | 2904 | 100 | Plus |
