BO26591.complete Sequence
3682 bp assembled on 2010-07-15
GenBank Submission: KX798158
> BO26591.complete
GAAGTTATCAGTCGACATGGCAGACTCCGGCAAACACGCGAGTGGTGGTC
ACAATGGAGCGAACAGCGAACGCAGAAACGACCAGAACGGACGCAACGGA
CGCAATGGACACAACGGACACAGTCAAGGACGACAGCTGCAGTTCCTGGA
CAATCCGCCCCCCAGCCAAGCCACCTTCAATGTGCGCAGTCTGTGGCCAA
GCATAAAGTCTGGTGTTCGCCGCTTGAGGAGCCAGTTGCTCCGGCGGACA
GCCACCACGGGTCCAGCGATGGCTCCGTCCGGTGGAGCGGACTTACCTCC
CTCGGACAATGATCGGGCTGCGCCATCCAGAAGCGGTGACGGGAACACGG
AAACAGACGGCAGTAATCCACATCGAAGGCTGGACGAATCGTCCGTGATG
GGCAGTATGCAGTCAGTGAAAAATTATATTAAAAGAACACGCCCAGGCCG
GAAAAAAAGAAAAGATGACGAGGACTTCACCTCGTCCGCTGGGTACGATG
CAGATGATGGGGAGAGGCGTATCATAAACCTAAATGGGCCACAGCCCACT
AAGTACGGTAATAATCGCATAACGACGGCAAAATATAGTTTCATCAGCTT
TTTGCCCGCGTTCCTGTTCGAGCAATTCCGGCGTTACTCCAACTGCTTTT
TCCTGCTAATTGCCATACTGCAACAAATCCCGGAGGTGTCGCCGACGGGT
CGTTACACCACGCTAGTGCCACTGATGTTCATCCTGTCGGTGAGCGCCAT
TAAGGAGATAATCGAGGACATTAAACGACATCGGGCGGATAATGAGATCA
ATCACCGATCGATAGAGCGCCTGGATAGTGGCTCGTGGTGCACAGTTCGC
TGGTCGGAGTTGACGGTGGGCGATATCATCAAAGTGGGAATCAATACCTT
CTTCCCCGCCGATCTGATTCTGCTGTCGTCCAGTGAACCGCAGGCCATGT
GCTTCATAGAGACGGCCAATTTGGATGGTGAGACCAACCTGAAGATTCGA
CAGGCCCTCCCAGCCACCGCTGAACTGCTGGAGACGAAGGATCTGCAACG
ATTGGAGGGCAGGATCGAGTGCGAGCTGCCCAACCGGCATTTATACGAGT
TTAACGGAGTGCTCAGGGAAACTGGAAAGCCACCCGCTGCTTTGGGCAAT
GATCAGGTGCTCCAACGTGGCGCCATTCTTCGGAACACGGCATGGGTGTT
CGGGATCGTGGTCTACTCCGGGCAAGAGACGAAGCTGATGAAGAACTCTA
CCTCGGCGCCATTGAAGCGCTCAACCGTAGACAAGCTGACCAACACCCAG
ATCCTCATGCTCTTCATGATCCTCATCTCATTGTGCATCATCAGCGGCTT
GTGCAATCTGTTCTGGACAAGGGAACATTCGGAAACGGACTGGTACCTGG
GCCTAACCGACTTCAAGACCAAGAGCCTTGGCTACAACCTGCTGACCTTC
TTCATTCTGTACAACAACCTGATCCCCATCTCGCTACAGGTGACGCTTGA
GCTTGTGCGTTTCCTGCAGGCCATTTTCATAAACTACGACATTGAGATGT
ATCACGAGGAATCAAACACGCCCGCCATGGCGCGCACCTCGAACTTGAAC
GAAGAGCTGGGCATGGTCAAGTATATATTCTCGGACAAGACAGGCACCCT
CACGCAGAACGTGATGGAGTTCAAGAAATGCTCCATCGCCGGATACGTAT
ACACAGCTGAGCGAACGCCGGAGGAATCTCAGCTAGTGCAGAATATCCTC
GGTCGTCATGAGACGTCCGCCGTGATAGAGGAGTTCCTGGAACTCCTATC
GGTGTGCCATACGGTAATACCCGAGCGCAAGGAAAACGGCAACATGATCT
ACCACGCTGCCAGTCCGGATGAGCGTGCTCTGGTGGAAGGTGCCCAGAAA
TTTGGCTACATCTTCGATACACGAACGCCAAAGTATGTGGAGATCAATGC
GCTAGGCGTGCGAAAGCGATACGAAGTTCTGAATGTCCTGGAGTTCACCT
CGTCGCGTAAGCGTATGTCGTTGATTGTTCGCACGCCGGAAAATAAGATC
AAGCTATTCTGCAAGGGAGCGGACACGGTGATATACGAACGTCTGGCTCC
TCAGGGTCAAGCCTTCCGGGAACAGACGCTGCGTCATTTGGAGGAGTTTG
CATCGGATGGATTGCGGACCCTCTGTTTGGCAGTTGCTGACATTCGGCCG
GATGTTTACCAAGAATGGAGCCAGACTTTCGACAAGGCATCGGTGGCTCT
TCAGAATCGCGAGAGCAAGTTGGAGGACGCGGCCAATCTGATTGAGAACA
ATCTTCGTCTACTTGGCGCCACGGCAATCGAAGATAGACTGCAGGATGGT
GTGCCGGAAACGATTGCCTCTCTGCTGGACGCCGGCATCTATATCTGGGT
CCTTACCGGTGACAAGCAGGAGACGGCCATTAATATTGGCTACTCCTGCC
GTCTGATTAGCCACTCCATGGATATCATAATACTAAACGAGGAGAGCCTC
GATGCCACCCGCGAAGTCATTCATCGCCATTATGGAGAATTCAAGAGTTC
GTCGGCGAAGGACGCCAATGTGGCACTAGTCATCGATGGTACTACGCTGA
AGTACGCCCTTAGCTGCGACCTGCGCAATGATTTCCAAGACTTGTGCATT
CTGTGTCGGGTGGTCATCTGCTGCAGAGTGTCTCCAATGCAAAAGGCTGA
GGTGGTCGAGATGGTCACCCAGAGCACGAATGCAGTGACCCTAGCCATTG
GCGATGGAGCCAACGACGTGGCAATGATCCAAAAAGCGAACGTGGGAATC
GGCATATCTGGAGTTGAGGGTCTCCAGGCGGCATGCGCATCGGACTACTC
GATCGCCCAGTTTCGCTATTTGCAGCGCCTACTCTTGGTCCATGGTGCTT
GGAACTACGCTAGGATCTCCAAGCTGATCCTGTACAGCTTCTACAAGAAC
GTGTGTCTGTATGTTATCGAACTGTGGTTCGCCGTCTACTCCGGCTGGTC
GGGCCAGATCCTGTTTGAACGCTGGACAATTGGCTTGTACAATGTGCTAT
TCACGGCCATGCCGCCGTTTGCGATGGGACTCTTTGAGAAATTCTGCACG
GCGGAAACGATGATCCGGTACCCGATGCTTTATAAAACATCACAGAATGC
GAAGCTCTTCAATGTGAAGGTGTTTTGGATCTGGATATTCAATGCGCTAC
TGCACTCGGTGTTCCTTTTCTGGTTACCGCTGGCAGCATACACAAAGGAA
GTGATCTGGAGCGATGGCAAGACCAGTGATTACCTATTGATGGGCAACCT
CGTTTATACTTACGTGATTGTTACCGTTTGCCTGAAGGCTGGACTCATCA
CCAATTCGTGGACCTGGCTTACCCATCTGGCCATTTGGGGCTCAATTGTC
CTGTGGTTCGGATTTCTGCTGATTTATAGCCATGTGTGGCCAATGTTCAA
GTTCGCGAGCAACTTCCGCGGCATGGACATACAGTTGCTATCGACGCCAG
TTTTCTATTTCTGCTTGATGCTGGTGCCCATTACCACGCTGCTGATCGAT
GTGATCTGCAAACTCGTACATAATACCGTGTTTAAGACACTGACGGAGGC
TGTTCGCGAAACGGAGATCCGACGCAGCGACATCTCCGAAGTGATGAACG
AACCGCGATCTTCGGCAAGCTTTCTAGACCAT
BO26591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RI | 3651 | CG42321-PI | 1..3648 | 17..3664 | 18225 | 100 | Plus |
| CG42321-RP | 3906 | CG42321-PP | 1..3647 | 17..3663 | 18220 | 100 | Plus |
| CG42321-RO | 3828 | CG42321-PO | 1..3647 | 17..3663 | 18220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RI | 4974 | CG42321-RI | 420..4067 | 17..3664 | 18225 | 100 | Plus |
| CG42321-RP | 5080 | CG42321-RP | 420..4066 | 17..3663 | 18220 | 100 | Plus |
| CG42321-RO | 4787 | CG42321-RO | 420..4066 | 17..3663 | 18220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13420335..13421707 | 2504..1132 | 6865 | 100 | Minus |
| 2R | 25286936 | 2R | 13419464..13420270 | 3310..2504 | 4035 | 100 | Minus |
| 2R | 25286936 | 2R | 13425513..13425960 | 464..17 | 2240 | 100 | Minus |
| 2R | 25286936 | 2R | 13419147..13419400 | 3564..3311 | 1270 | 100 | Minus |
| 2R | 25286936 | 2R | 13421839..13422039 | 1131..931 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 13422320..13422505 | 772..587 | 915 | 99.5 | Minus |
| 2R | 25286936 | 2R | 13422099..13422259 | 933..773 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 13422602..13422727 | 588..463 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 13418986..13419085 | 3664..3565 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:40:42 has no hits.
BO26591.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 17:45:34 Download gff for
BO26591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RI | 419..4066 | 17..3666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:20 Download gff for
BO26591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RI | 420..4067 | 17..3666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:54:53 Download gff for
BO26591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RI | 420..4067 | 17..3666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:54:53 Download gff for
BO26591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13419147..13419400 | 3311..3564 | 100 | <- | Minus |
| 2R | 13418984..13419085 | 3565..3666 | 98 | <- | Minus |
| 2R | 13419464..13420270 | 2504..3310 | 100 | <- | Minus |
| 2R | 13420336..13421707 | 1132..2503 | 100 | <- | Minus |
| 2R | 13421839..13422036 | 934..1131 | 100 | <- | Minus |
| 2R | 13422099..13422259 | 773..933 | 100 | <- | Minus |
| 2R | 13422320..13422503 | 589..772 | 99 | <- | Minus |
| 2R | 13422602..13422725 | 465..588 | 100 | <- | Minus |
| 2R | 13425513..13425960 | 17..464 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:20 Download gff for
BO26591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9306652..9306905 | 3311..3564 | 100 | <- | Minus |
| arm_2R | 9306489..9306590 | 3565..3666 | 98 | <- | Minus |
| arm_2R | 9306969..9307775 | 2504..3310 | 100 | <- | Minus |
| arm_2R | 9307841..9309212 | 1132..2503 | 100 | <- | Minus |
| arm_2R | 9309344..9309541 | 934..1131 | 100 | <- | Minus |
| arm_2R | 9309604..9309764 | 773..933 | 100 | <- | Minus |
| arm_2R | 9309825..9310008 | 589..772 | 99 | <- | Minus |
| arm_2R | 9310107..9310230 | 465..588 | 100 | <- | Minus |
| arm_2R | 9313018..9313465 | 17..464 | 100 | | Minus |
BO26591.pep Sequence
Translation from 16 to 3682
> BO26591.pep
MADSGKHASGGHNGANSERRNDQNGRNGRNGHNGHSQGRQLQFLDNPPPS
QATFNVRSLWPSIKSGVRRLRSQLLRRTATTGPAMAPSGGADLPPSDNDR
AAPSRSGDGNTETDGSNPHRRLDESSVMGSMQSVKNYIKRTRPGRKKRKD
DEDFTSSAGYDADDGERRIINLNGPQPTKYGNNRITTAKYSFISFLPAFL
FEQFRRYSNCFFLLIAILQQIPEVSPTGRYTTLVPLMFILSVSAIKEIIE
DIKRHRADNEINHRSIERLDSGSWCTVRWSELTVGDIIKVGINTFFPADL
ILLSSSEPQAMCFIETANLDGETNLKIRQALPATAELLETKDLQRLEGRI
ECELPNRHLYEFNGVLRETGKPPAALGNDQVLQRGAILRNTAWVFGIVVY
SGQETKLMKNSTSAPLKRSTVDKLTNTQILMLFMILISLCIISGLCNLFW
TREHSETDWYLGLTDFKTKSLGYNLLTFFILYNNLIPISLQVTLELVRFL
QAIFINYDIEMYHEESNTPAMARTSNLNEELGMVKYIFSDKTGTLTQNVM
EFKKCSIAGYVYTAERTPEESQLVQNILGRHETSAVIEEFLELLSVCHTV
IPERKENGNMIYHAASPDERALVEGAQKFGYIFDTRTPKYVEINALGVRK
RYEVLNVLEFTSSRKRMSLIVRTPENKIKLFCKGADTVIYERLAPQGQAF
REQTLRHLEEFASDGLRTLCLAVADIRPDVYQEWSQTFDKASVALQNRES
KLEDAANLIENNLRLLGATAIEDRLQDGVPETIASLLDAGIYIWVLTGDK
QETAINIGYSCRLISHSMDIIILNEESLDATREVIHRHYGEFKSSSAKDA
NVALVIDGTTLKYALSCDLRNDFQDLCILCRVVICCRVSPMQKAEVVEMV
TQSTNAVTLAIGDGANDVAMIQKANVGIGISGVEGLQAACASDYSIAQFR
YLQRLLLVHGAWNYARISKLILYSFYKNVCLYVIELWFAVYSGWSGQILF
ERWTIGLYNVLFTAMPPFAMGLFEKFCTAETMIRYPMLYKTSQNAKLFNV
KVFWIWIFNALLHSVFLFWLPLAAYTKEVIWSDGKTSDYLLMGNLVYTYV
IVTVCLKAGLITNSWTWLTHLAIWGSIVLWFGFLLIYSHVWPMFKFASNF
RGMDIQLLSTPVFYFCLMLVPITTLLIDVICKLVHNTVFKTLTEAVRETE
IRRSDISEVMNEPRSSASFLDH
BO26591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-PP | 1301 | CG42321-PP | 1..1218 | 1..1218 | 6317 | 99.9 | Plus |
| CG42321-PO | 1275 | CG42321-PO | 1..1216 | 1..1216 | 6315 | 100 | Plus |
| CG42321-PN | 1275 | CG42321-PN | 1..1216 | 1..1216 | 6315 | 100 | Plus |
| CG42321-PI | 1216 | CG42321-PI | 1..1216 | 1..1216 | 6315 | 100 | Plus |
| CG42321-PH | 1350 | CG42321-PH | 153..1267 | 105..1218 | 5533 | 96.5 | Plus |
