BO26593.complete Sequence
1618 bp assembled on 2010-07-15
GenBank Submission: KX794906
> BO26593.complete
GAAGTTATCAGTCGACATGAATAATAGCGAGGAAATCTGCACAGACAGTT
TAACTTTACGCGGCTTTGAGGAGTACACCGTGAATGACTATAGTCTGGGT
GGCATAATCGAGGAGAATCGCTTTTATATTGTGGCCCCAAAGGATATTGT
GGTAGCTAGTCTTATTGAAACAGATGATCGTATAGAATGGTTGATTAAAC
ACAGTAAATTTGAGGAGGCAATGGAACTTATATCTGCGAATGGAGGTAAC
GTTCCCGTACTTTCCGTTGCTAAACTTTATATCAACCATTTACTGGCGCT
TAAGAAGTATGATGACGCAGCAAAACTTTGCCTCCGCATGCTAGGCAATG
ACAAAGTCCTTTGGGAAGAGGAAGTTTTTAAGTTTGTAAAGTGTCAGCAG
CTACGATCAGTTAGCGCCTATCTGCCGACTTCAGACGAATGCAAACTTGA
TCCCCATGTATACGAAATGGTTTTATACGAGTTTCTCAAATTTGATGTAT
GTGGTTTCCTGAATCTTATCAAGGAATGGCCATCTCATCTTTATGACGGC
CTGGCTGTTATTAACGCTATTCACGATAACTTTCGAAAGCACTATGCCAA
TCAGTTGCTGGAATCATTGGCTCTTTTGTATTCCTATCAAGGCGACTTCG
AAAGTGCTCTTCGCATGTATTTAAAGTTGCAGAACAAGGATGTCTTCCAA
TTAATTCGACGGTATGAGCTTTACGATGTCATTTCAAAACTGATTATTCC
ACTTATTCAATTGGATCGTGACTGCGCCTTTGAAATACTACTTGACAAGA
AAAAAATAAAGACTGAGATAGTTGTCCACCAGCTAGAGCACAATCAAGAG
TACCTGTACTGGTACTTAGATTCTTTACTTAAAAAGGATCCCAGTAATGT
GTTTCAAAAAAAACTTATCTCCTTATATGCCATTTTCGATCGAAACAAAC
TATTGCCCTTTCTAAAGCGTTCAAAGGACTATGACATTCAGGAGGCGTTG
GTCATATGCAAACAGGAAAACTTTTATCCAGAAATAGTCTACCTGCTCGG
GTGTATGGGTGGCGTAGAAGCGTCCGAAGCACTTAATATTATTATTCATC
GCATCAGAGACATAGAAATGGCCATAGAGTTTTGCAAGGAGCACGATGAC
AGCGATCTTTGGAATGCACTTATAAATGAATTTAGCAAGCACCCTGAAAT
TGTGACCAAAGTTTTGGACGGCATAGTTGACTACTTTAGCCCAGCGGTGG
TTGTTGGAAAGATCAAAATGGGACAGAACATTCCAAATCTTCGACAATCA
CTTATAAAAATGCTGCGCCACTACAATCTTCAAGGTGAAATTTTATCCTC
CGCCCAACAAATTCAACTTAATGACTATTTTGAAATTCACTCGGAGATAG
TCACCACGCAAAGACGAGGTCAGCAGGTTTCCTACGAACAACTATGCTCA
TTGTGCCACCGTCCAGTACTGATGGCAGGCACACACTTGTATTGTATAAT
CAGGTTAGAGTGTGGTCATGTATACCATAAACCGTGCATACAAGGTGAAT
TGCTTAAAAATTGCAACGAGTGTAACCTTTGGAAGTTAACCGTGGGGAAA
GCAAGCTTTCTAGACCAT
BO26593.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lt-RF | 2526 | CG18028-PF | 940..2523 | 17..1600 | 7920 | 100 | Plus |
| lt-RE | 2526 | CG18028-PE | 940..2523 | 17..1600 | 7920 | 100 | Plus |
| lt-RC | 1587 | CG18028-PC | 1..1584 | 17..1600 | 7920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lt-RF | 5316 | CG18028-RF | 1041..2624 | 17..1600 | 7920 | 100 | Plus |
| lt-RE | 4404 | CG18028-RE | 1041..2624 | 17..1600 | 7920 | 100 | Plus |
| lt-RC | 2760 | CG18028-RC | 1093..2676 | 17..1600 | 7920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22938904..22939307 | 274..677 | 2020 | 100 | Plus |
| 2L | 23513712 | 2L | 22940072..22940443 | 1229..1600 | 1860 | 100 | Plus |
| 2L | 23513712 | 2L | 22939594..22939834 | 862..1102 | 1205 | 100 | Plus |
| 2L | 23513712 | 2L | 22927578..22927765 | 17..204 | 940 | 100 | Plus |
| 2L | 23513712 | 2L | 22939354..22939540 | 676..862 | 935 | 100 | Plus |
| 2L | 23513712 | 2L | 22939887..22940013 | 1103..1229 | 635 | 100 | Plus |
| 2L | 23513712 | 2L | 22938772..22938842 | 203..273 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:51:11 has no hits.
BO26593.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:53:33 Download gff for
BO26593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RB | 1044..2627 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:50 Download gff for
BO26593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RB | 1036..2619 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:38:42 Download gff for
BO26593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RC | 1093..2676 | 17..1602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:38:42 Download gff for
BO26593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22927578..22927765 | 17..204 | 100 | -> | Plus |
| 2L | 22938774..22938842 | 205..273 | 100 | -> | Plus |
| 2L | 22938904..22939305 | 274..675 | 100 | -> | Plus |
| 2L | 22939354..22939540 | 676..862 | 100 | -> | Plus |
| 2L | 22939595..22939834 | 863..1102 | 100 | -> | Plus |
| 2L | 22939887..22940013 | 1103..1229 | 100 | -> | Plus |
| 2L | 22940073..22940443 | 1230..1602 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:50 Download gff for
BO26593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22820310..22820497 | 17..204 | 100 | -> | Plus |
| arm_2L | 22831506..22831574 | 205..273 | 100 | -> | Plus |
| arm_2L | 22831636..22832037 | 274..675 | 100 | -> | Plus |
| arm_2L | 22832086..22832272 | 676..862 | 100 | -> | Plus |
| arm_2L | 22832327..22832566 | 863..1102 | 100 | -> | Plus |
| arm_2L | 22832619..22832745 | 1103..1229 | 100 | -> | Plus |
| arm_2L | 22832805..22833175 | 1230..1602 | 99 | | Plus |
BO26593.pep Sequence
Translation from 16 to 1618
> BO26593.pep
MNNSEEICTDSLTLRGFEEYTVNDYSLGGIIEENRFYIVAPKDIVVASLI
ETDDRIEWLIKHSKFEEAMELISANGGNVPVLSVAKLYINHLLALKKYDD
AAKLCLRMLGNDKVLWEEEVFKFVKCQQLRSVSAYLPTSDECKLDPHVYE
MVLYEFLKFDVCGFLNLIKEWPSHLYDGLAVINAIHDNFRKHYANQLLES
LALLYSYQGDFESALRMYLKLQNKDVFQLIRRYELYDVISKLIIPLIQLD
RDCAFEILLDKKKIKTEIVVHQLEHNQEYLYWYLDSLLKKDPSNVFQKKL
ISLYAIFDRNKLLPFLKRSKDYDIQEALVICKQENFYPEIVYLLGCMGGV
EASEALNIIIHRIRDIEMAIEFCKEHDDSDLWNALINEFSKHPEIVTKVL
DGIVDYFSPAVVVGKIKMGQNIPNLRQSLIKMLRHYNLQGEILSSAQQIQ
LNDYFEIHSEIVTTQRRGQQVSYEQLCSLCHRPVLMAGTHLYCIIRLECG
HVYHKPCIQGELLKNCNECNLWKLTVGKASFLDH
BO26593.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lt-PF | 841 | CG18028-PF | 314..841 | 1..528 | 2771 | 100 | Plus |
| lt-PE | 841 | CG18028-PE | 314..841 | 1..528 | 2771 | 100 | Plus |
| lt-PC | 528 | CG18028-PC | 1..528 | 1..528 | 2771 | 100 | Plus |
| lt-PA | 841 | CG18028-PA | 314..841 | 1..528 | 2771 | 100 | Plus |
