Clone BO26596 Report

Search the DGRC for BO26596

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:265
Well:96
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO26596.pep: Imported from assembly
Sequenced Size:691

Clone Sequence Records

BO26596.complete Sequence

691 bp assembled on 2010-07-01

> BO26596.complete
GAAGTTATCAGTCGACATGTTAAATTCACACAACACAAACCACAATAACA
ACAGCGCCAGCAACAGCAACTACAACAAAGGCCACAAAATGCATTTGAAA
AGTGCAACGGCAAAAGCAACAATAATGAAACATAAGTTAAGCAAATTTTA
CGGATACGGTTGGATGCAAGTCTTCCTACTACTTACAGTCCTCGTGATTG
GTAATCAAAGTGCCTGGCAGGAGAATATACGACCAAAACTCTACGTTGAA
TTAGGTCCCGAAGATGTACTGAAGTTTGTGGGAAACGAAAGTGTTGTGGA
TCACTTCAAGCTCGTCACCAAGGATGGCAACAGTCTGCTCATCGGTGCCA
GAAACACGGTTTTTAATTTAAGCATACACGATCTCGTCGAGCAGCAGCGA
TTGGTCTGGACATCGCCGGAGGATGATACCAAAATGTGTCTCGTCAAGGG
CAAGGATGAGGAGGCCTGCCAGAACTACATCCGCATCATGGTGGTGCCAT
CGCCGGGTCGCCTTTTCGTTTGTGGCACCAACTCGTTCCGGCCCATGTGC
AACACGTATATCATTAGTGACAGCAACTACACGCTGGAGGCCACGAAGAA
CGGACAGGCGGTGTGCCCCTACGATCCGCGTCACAACTCCACCTCTGTGC
TGGCCGGTAAGTGTGCTAAAATTGCAAGCTTTCTAGACCAT

BO26596.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
Sema-1a-RF 2481 CG18405-PF 1..640 17..656 3200 100 Plus
Sema-1a-RE 2718 CG18405-PE 1..640 17..656 3200 100 Plus
Sema-1a-RD 2718 CG18405-PD 1..640 17..656 3200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
Sema-1a-RF 7980 CG18405-RF 1397..2036 17..656 3200 100 Plus
Sema-1a-RE 9624 CG18405-RE 1077..1716 17..656 3200 100 Plus
Sema-1a-RD 9706 CG18405-RD 1283..1922 17..656 3200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8564059..8564298 17..256 1200 100 Plus
2L 23513712 2L 8645025..8645239 459..673 1075 100 Plus
2L 23513712 2L 8640584..8640696 349..461 565 100 Plus
2L 23513712 2L 8631025..8631123 253..351 495 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:00:30 has no hits.

BO26596.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 14:03:16 Download gff for BO26596.complete
Subject Subject Range Query Range Percent Splice Strand
Sema-1a-RC 1399..2050 22..675 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:04 Download gff for BO26596.complete
Subject Subject Range Query Range Percent Splice Strand
Sema-1a-RD 1288..1926 22..660 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:28 Download gff for BO26596.complete
Subject Subject Range Query Range Percent Splice Strand
Sema-1a-RD 1288..1926 22..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:28 Download gff for BO26596.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8564064..8564296 22..254 100 -> Plus
2L 8631027..8631123 255..351 100 -> Plus
2L 8640587..8640695 352..460 100 -> Plus
2L 8645027..8645239 461..675 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:04 Download gff for BO26596.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8564064..8564296 22..254 100 -> Plus
arm_2L 8631027..8631123 255..351 100 -> Plus
arm_2L 8640587..8640695 352..460 100 -> Plus
arm_2L 8645027..8645239 461..675 99   Plus

BO26596.pep Sequence

Translation from 16 to 691

> BO26596.pep
MLNSHNTNHNNNSASNSNYNKGHKMHLKSATAKATIMKHKLSKFYGYGWM
QVFLLLTVLVIGNQSAWQENIRPKLYVELGPEDVLKFVGNESVVDHFKLV
TKDGNSLLIGARNTVFNLSIHDLVEQQRLVWTSPEDDTKMCLVKGKDEEA
CQNYIRIMVVPSPGRLFVCGTNSFRPMCNTYIISDSNYTLEATKNGQAVC
PYDPRHNSTSVLAGKCAKIASFLDH

BO26596.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Sema-1a-PI 817 CG18405-PI 1..213 1..213 1134 100 Plus
Sema-1a-PH 820 CG18405-PH 1..213 1..213 1134 100 Plus
Sema-1a-PF 826 CG18405-PF 1..213 1..213 1134 100 Plus
Sema-1a-PA 899 CG18405-PA 1..213 1..213 1134 100 Plus
Sema-1a-PE 905 CG18405-PE 1..213 1..213 1134 100 Plus