BO26636.complete Sequence
1249 bp assembled on 2012-04-24
GenBank Submission: KX795736
> BO26636.complete
GAAGTTATCAGTCGACATGCGTTTGTTAAAGGAGGAAATTGCCCAGTTTC
ACGAGCAGTCGCTGGAGAAGTATGATGGACTGGATCCGCATGATCTGTAT
GTACTATATAAGAAGCTTCAGATGGAGCTGGAGCTCATCCAGGTGCAGGA
GGATTATATCAAGGAGGAGCAACGCAATCTGAAGAAGGAGTTCATACACG
CTCAGGAGGAAGTTAAGCGCATAAAAGCCGTGCCTCTGGTCATTGGCCAG
TTTCTGGAGGCGGTGGATGAAAACAACGGCATAGTGGCCTCCACCACCGG
ATCCAATTACTATGTTCGAGTGCTATCCACCATTGACAGGGAGCAACTGA
AGCCGTCCTCTTCGGTTGGGCTGCACAAGCAAAGCAATTGTCTGGTCGAT
CTGGTGCCACCGGAGGCGGACAGCACCATATCGATGCTATCGCCGGATGA
GAAACCGGATATCAGCTACTCCGACATTGGAGGCTTGGACATCCAGAAAC
AGGAGATACGCGAGGCTGTCGAGCTGCCCTTGACCCACGCCCAGCTTTAC
AAGCAAATTGGCATCGATCCCCCACGCGGCGTCCTCCTTTTTGGACCACC
TGGATGTGGCAAAACCATGCTGGCCAAGGCGGTGGCCCATCATACAACTG
CATCATTTATTCGTGTCGTGGGCTCCGAGTTCGTCCAGAAATACCTAGGC
GAGGGGCCACGCATGGTGCGAGATCTTTTCCGCCTGGCCAAGCAGAATTC
TCCTTCAATTATCTTCATTGATGAGATCGATGCGATTGCCACCAAGCGCT
TTGATGCACAGACAGGTGCTGATCGCGAGGTGCAGCGCATCCTGCTGGAG
CTACTCAACCAAATGGATGGCTTTGATGAGACCACCAACATTAAGGTTAT
CATGGCCACCAATCGTGCAGATACCTTAGATCCGGCTCTGTTACGACCCG
GCCGTTTGGATCGGAAAATTGAGTTACCATTGCCGGATCGTCGCCAGAAG
CGCTTAGTTTTCACCACAATCACCTCGAAAATGAATGTGGGTGAGGATGT
GGATCTGGAGGACATCATTGCACGTCCGGACAAGATCTCCAATGCGGATA
TCAATGCCATTTGCCAAGAGGCTGGTATGCATGCAGTGCGCGAGAATCGC
TATGTGGTCAATGCCAAGGACTTCGAAAAGGGTTATAAGACCAGCGTGCG
CAAGGACGAAGCTCAGCATGAGTTCTATAGCGCAAGCTTTCTAGACCAT
BO26636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3R-RD | 1218 | CG9475-PD | 1..1215 | 17..1231 | 6075 | 100 | Plus |
| Rpt3R-RC | 1218 | CG9475-PC | 1..1215 | 17..1231 | 6075 | 100 | Plus |
| Rpt3-RB | 1242 | CG16916-PB | 136..1198 | 128..1190 | 2090 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3R-RD | 1414 | CG9475-RD | 34..1248 | 17..1231 | 6075 | 100 | Plus |
| Rpt3R-RC | 1432 | CG9475-RC | 52..1266 | 17..1231 | 6075 | 100 | Plus |
| Rpt3-RB | 1553 | CG16916-RB | 348..1410 | 128..1190 | 2090 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9754901..9755572 | 1231..560 | 3360 | 100 | Minus |
| 3R | 32079331 | 3R | 9755619..9756163 | 561..17 | 2725 | 100 | Minus |
| X | 23542271 | X | 11125580..11126642 | 128..1190 | 2090 | 79.8 | Plus |
| X | 23542271 | X | 21317028..21317332 | 671..975 | 295 | 73.1 | Plus |
| 3R | 32079331 | 3R | 30582600..30582688 | 915..827 | 205 | 82 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:47:35 has no hits.
BO26636.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:06:59 Download gff for
BO26636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RB | 37..160 | 17..140 | 100 | == | Plus |
| Rpt3R-RB | 161..1203 | 189..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:38 Download gff for
BO26636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 37..1251 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:27 Download gff for
BO26636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 52..1266 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:18:27 Download gff for
BO26636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 52..1266 | 17..1233 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:18:27 Download gff for
BO26636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9754899..9755571 | 561..1233 | 99 | <- | Minus |
| 3R | 9755620..9756163 | 17..560 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:27 Download gff for
BO26636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5580621..5581293 | 561..1233 | 99 | <- | Minus |
| arm_3R | 5581342..5581885 | 17..560 | 100 | | Minus |
BO26636.pep Sequence
Translation from 16 to 1249
> BO26636.pep
MRLLKEEIAQFHEQSLEKYDGLDPHDLYVLYKKLQMELELIQVQEDYIKE
EQRNLKKEFIHAQEEVKRIKAVPLVIGQFLEAVDENNGIVASTTGSNYYV
RVLSTIDREQLKPSSSVGLHKQSNCLVDLVPPEADSTISMLSPDEKPDIS
YSDIGGLDIQKQEIREAVELPLTHAQLYKQIGIDPPRGVLLFGPPGCGKT
MLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQNSPSIIF
IDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIMATNR
ADTLDPALLRPGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDI
IARPDKISNADINAICQEAGMHAVRENRYVVNAKDFEKGYKTSVRKDEAQ
HEFYSASFLDH
BO26636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3R-PD | 405 | CG9475-PD | 1..405 | 1..405 | 2058 | 100 | Plus |
| Rpt3R-PC | 405 | CG9475-PC | 1..405 | 1..405 | 2058 | 100 | Plus |
| Rpt3-PB | 413 | CG16916-PB | 28..412 | 20..404 | 1731 | 85.2 | Plus |
| Rpt3-PA | 413 | CG16916-PA | 28..412 | 20..404 | 1731 | 85.2 | Plus |
| Rpt2-PB | 439 | CG5289-PB | 63..435 | 33..402 | 988 | 50.1 | Plus |
