BO26640.complete Sequence
3757 bp assembled on 2010-08-02
GenBank Submission: KX799311
> BO26640.complete
GAAGTTATCAGTCGACATGCGGCCAGGACCCGGGCTGGTCGTGATGGCGC
TTGCGTTTATTTCGGGGGCTCGGCGTGGCAGCAGCAGCAGCATCAGCTCA
GCAACAGCAACACCAACAGCGGCAGCAACATCTGCAGCAGCAGCAGCGGC
AGCAGCAGCAACATCCGCAGCATCAACATCCGCAGCAGCAGCAGCAGCAG
CAAATACAGCAGGCGGCCGTAAAAGGGGCAGAAGTGGCGGCGGAGTCGGA
GGCGGAGGAGTTGCAACCACGTTACCGTCCACTGGCGAGTCGTCGTCATC
GTCATTCGTTCGCAGCTCTGGCTCATACCTGCTGCCCATCTTCCTGCCCC
ACTACCTCGACTTCGCGCTCCAGTTCCACCCCCAACTGCCGCCGCGGGAG
TACAGCCAGGGCCGGGCCCACTCCGAGTCCTGGGCGTCCTCGAGGATAGC
GGACAGGCTTCAGCAGCGGCGACGACGACGCGAGAGCAGCAGCAGCAGGG
ATATAGCAGGTAGGGCAGGCGGAACAGGCGGATCGGGAGCGGATTCAGGA
GGTCTGGCAGCCACAACCGGTCACAGCACAGAGTCAAGCGAGGCCAACAA
CCAGGAGGACGGCGAGGATCGCGGCCTGACAGTGCAGTTCCCCTCGTCGC
AGGCCTACGACGAGGACCAGGACATCTTTGCCCTGGTGGCCGAGGACGAC
CTGCTGTCCGAGGAGTCCTTCGATCGCCTGATCAAGCTCAACGAAGACGC
CGACGAGGAGGACTACAATCTGCAGCAGCAGCACTTGCCGCAGCACAAGC
AGCAGCAACAGCAACCCGGAGCGGAAACGGAAATAGACACAGAGCCAGAG
AGCGAGACGGAAACGGAGACGGAGACAGAGACAGACACAGAAGCGGAAGT
GGAAGTGGAAAGAGAGACCGAACAGCAGCAGCAGGACGAGAGCCGACTGA
TTGATGAGGGTGTCCTGCAGCACAGCGACCACAGTAACAGCCACTCGAAG
GAGTTCGCCATCAGCTACGATAACAACAATAACAAACGGGAGGCCAGCGG
CCACATCCTTGATGCCCAGACGGCGCAGTTGATTGGCCACAAGGATAACA
CCGTGCCCGCCGTGGCCAGCACCGAGTCGGCAGGAGGCGGCAGCATCACC
ACATCCTTGCCAGCGCCCGTGGATCTGAAGAAGTCCATACTCGGGACTGC
GACTTCATTAACACGCCTTAATCCTTGGATATCAGCCTGTGATCTGGCAC
AGCCGGGCACAGGAACCGACTTGCAGGGTCAGTGCTCGGCTGGTACACTG
CCCATGGCCTGGGTCGATGAGGGACCCGGGCCCCCAACCTGCCCGCGATC
CTGCGCCGAACAGCAGCAACAGAAGCCAGTGGCCTCCAAGGCCAAGCGGA
GTGCCACCAGTAACAATAAAGTCAAGTATTTCGTAAACTATAAGACAACC
CAGATGCGGTTGCGCCGCGCTGGGGATCACGCGATGGACGCCACCGACAG
CCATTCCCCGCTGGCCAGCGAGCGGCCACCGAGCACCACCGACGACCAGG
ACGTGGACGTGTCCTCCACCACTGAGGAGGCGGAGCCGGAGCCCACGCTG
TCCTACAGCCATCTGCACGCCCAGGAGCCGGTCCTGGCCCACCAGCAGGA
CCCGCGGGAGCGGGAGCAGGAGCAGCAGGAGCAACAACAGTGCCTTGAAT
ATCTGGGCGATTCCGCCGAGTCGAGTCCGCAGCACCTGTGCGGCCTCCAG
TCACCTGGTCATCTGCTGGAGCGACTGAAGGTCCTGCGGCTGCGCAACTG
CTGCGAGAGGAGCGTCTTTAGCTCCCTGCACACGCTGGCCCTCAATGCCA
GCCTTACCGATCGCCAGGAGTGCGTCCGCGTGCTCAGCGACCTGCTGGAC
GTAGATGGACTGGCCAACAGGATCACCTGCGAGCTGGCCGAGATCCTGTT
CCGCTTCGACTGCCGGCAGGTCTACTCGCTGATCAACCAGTGCGACGACT
GCAAGGAAGCATATCGTCGCTGGGTCTGCAGTACACTAGTGCCATATTTC
GCCGAGCCAAAGGACGTGTCGCCGCAACCGAAGGACGAAGGACAGGGCAA
AGGCAAACGCTCGGCAAGGAGTGCAGCGAGTGCGGAGGCAACGGCGATGG
CGGACGGAATCAAGCATAAATCTCTGAAATTAATCAGCAATAACAATAAA
TCAAATAACGGCAATAACATGAACGAGCGTCAGATTAATCAGAAGCATGA
CAAGAGCTCCAATGCGAACGCGAACGCGAACTCAAACGCCAGCAAGGACA
TTGACCGCAGCGCGGAGGAGGCGATTGACAGGGACCTGGTCCAGACATTC
TACGACGTTGTTGGTCTGTCTAAGCCCCGCCACGGCGAGGAGGAGGTCCT
GCCGGAGAATGAGGCTGGATTAGGACGCAGTGCGGACTCCGAAGTGGATA
AGGGTGCGGAGCCGGACAGGAAGAGAAGTAGGAACAGGGAGGCGGAGCTG
GAGCTGGATACGGAGGCGGAGGCCGAACAACAATCCAATAATTTCATATC
GACTGCCAATAATTCGGATCCCAGAGCTACGGATCCAGTGATATCAAAAC
TACAGAAGAGATCAACGCGCAAGACAGAGTTCCGTAAGCGTCGTCGTATC
CGGCCGTGCCTGAGCGTCTGCCAAACCGTGGAACAAAAGTGCCCCTACCT
GCTGCCCGCCGATCGCGCCCCTGCGCTGCCCACCCAATATGCCGGCGAGC
CGACATTTCTCTGCCTAGATCAAAACATACCCGAGACTGGGGCGCAGCTG
GAGAAGTCTAGCTACGGCCCCAACGATTGCTGCTACAGTTACTGCAACGG
ACCGGCCTCCGGAATATGCACCGTTTGCCAGGATTTCGGCCAGCCCGGGA
CGGAGGAGCGCGAAATGGCGGGCAACTCCACCCGCCGTGTGCACAACATC
ACACTCTCGCTGAGCTCACATCCCGGCGAGCACGCCCGCGCCAAGAGCGT
GGCTTTGGCCCTGCGGAACGTCAGCCAAACGGGGAGCGATCCGGACGCAG
TGGAAACGCTGCTCGATCGCCTGCCGTACTACGCCAGCCACGACGGGATC
TTCTACTACGACGAGGAGGGCGAGATGCCACACGCGTCGCTCTCCGGCGA
CTGTGCCGTAGTGCCCGCCGCTACCACGCGCTGCACCATTCCGTACTACG
CCTCCGGGACGGGAGCGGTGGCCAAGCCGCCCACGCAGCTGCTGGTTTGG
CTGAGCGCCCTGCTCGGCCTGCTCAGCAGCTGTGGAGCGGCGCGTCAGAG
GTGGAGCTGTCAGTGGAGCAGTGGCTGCGGCGGACACCGGGCTCGCAGTC
GCCAAGCGGTCGCCTGCGAGGCCAACTGCCACGAGCAGGAGCTGGTGAAG
AGCAGGAGCTGCAGCCAGAGGAGCCCGAAGGTGCGTAGGGAGAAGCCAGG
TCAGGACCAGGACGCTGAGCTGGTGGCCTTCAGGACGTGGCTGTGGTCCA
GCTCTTGGCATGCCTACAAGCTGACCTGCAGCAAAATACGATACTTCAGC
AGCCGGAGCCGGTTCAAAGGAGAGACGAGGGCCGCTCGTTCAGCGAACTC
CAAGGACCCAAGTGGATTACAGTGGAGTCGGGCGGCAGGATGCACTAGGA
CTAGGAACTACCGCTTCTTCTACTACTACAACTACAACATCAACGACTGG
TGGCGGAGATGGTGGCGCTGCCTGAGCAGCGGGGCCTTAGCAAGCTTTCT
AGACCAT
BO26640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mid1-RB | 3726 | CG33988-PB | 1..3723 | 17..3739 | 18615 | 100 | Plus |
| Mid1-RA | 3726 | CG33988-PA | 1..3723 | 17..3739 | 18615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mid1-RB | 8297 | CG33988-RB | 606..4328 | 17..3739 | 18615 | 100 | Plus |
| Mid1-RA | 4730 | CG33988-RA | 606..4328 | 17..3739 | 18615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24725338..24726598 | 1277..17 | 6305 | 100 | Minus |
| 2R | 25286936 | 2R | 24699347..24700319 | 3739..2767 | 4865 | 100 | Minus |
| 2R | 25286936 | 2R | 24714470..24715206 | 2006..1270 | 3685 | 100 | Minus |
| 2R | 25286936 | 2R | 24700605..24701211 | 2610..2004 | 3035 | 100 | Minus |
| 2R | 25286936 | 2R | 24700379..24700538 | 2768..2609 | 800 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..7112 | 756..1147 | 241 | 56.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1129 | 1621..1690 | 152 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2651 | 1640..1690 | 129 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6847 | 1640..1690 | 129 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6799 | 1609..1690 | 124 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1515..1574 | 1631..1690 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6778 | 1640..1690 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6848..6898 | 1640..1690 | 120 | 70.6 | Plus |
BO26640.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 10:19:44 Download gff for
BO26640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33988-RA | 602..4324 | 17..3741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:46 Download gff for
BO26640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33988-RA | 606..4328 | 17..3741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:51 Download gff for
BO26640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mid1-RA | 606..4328 | 17..3741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:51 Download gff for
BO26640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24699345..24700317 | 2769..3741 | 99 | <- | Minus |
| 2R | 24700379..24700536 | 2611..2768 | 100 | <- | Minus |
| 2R | 24700605..24701209 | 2006..2610 | 100 | <- | Minus |
| 2R | 24714471..24715199 | 1277..2005 | 100 | <- | Minus |
| 2R | 24725339..24726598 | 17..1276 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:46 Download gff for
BO26640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20586868..20587840 | 2769..3741 | 99 | <- | Minus |
| arm_2R | 20587902..20588059 | 2611..2768 | 100 | <- | Minus |
| arm_2R | 20588128..20588732 | 2006..2610 | 100 | <- | Minus |
| arm_2R | 20601994..20602722 | 1277..2005 | 100 | <- | Minus |
| arm_2R | 20612862..20614121 | 17..1276 | 100 | | Minus |
BO26640.pep Sequence
Translation from 16 to 3757
> BO26640.pep
MRPGPGLVVMALAFISGARRGSSSSISSATATPTAAATSAAAAAAAAATS
AASTSAAAAAAANTAGGRKRGRSGGGVGGGGVATTLPSTGESSSSSFVRS
SGSYLLPIFLPHYLDFALQFHPQLPPREYSQGRAHSESWASSRIADRLQQ
RRRRRESSSSRDIAGRAGGTGGSGADSGGLAATTGHSTESSEANNQEDGE
DRGLTVQFPSSQAYDEDQDIFALVAEDDLLSEESFDRLIKLNEDADEEDY
NLQQQHLPQHKQQQQQPGAETEIDTEPESETETETETETDTEAEVEVERE
TEQQQQDESRLIDEGVLQHSDHSNSHSKEFAISYDNNNNKREASGHILDA
QTAQLIGHKDNTVPAVASTESAGGGSITTSLPAPVDLKKSILGTATSLTR
LNPWISACDLAQPGTGTDLQGQCSAGTLPMAWVDEGPGPPTCPRSCAEQQ
QQKPVASKAKRSATSNNKVKYFVNYKTTQMRLRRAGDHAMDATDSHSPLA
SERPPSTTDDQDVDVSSTTEEAEPEPTLSYSHLHAQEPVLAHQQDPRERE
QEQQEQQQCLEYLGDSAESSPQHLCGLQSPGHLLERLKVLRLRNCCERSV
FSSLHTLALNASLTDRQECVRVLSDLLDVDGLANRITCELAEILFRFDCR
QVYSLINQCDDCKEAYRRWVCSTLVPYFAEPKDVSPQPKDEGQGKGKRSA
RSAASAEATAMADGIKHKSLKLISNNNKSNNGNNMNERQINQKHDKSSNA
NANANSNASKDIDRSAEEAIDRDLVQTFYDVVGLSKPRHGEEEVLPENEA
GLGRSADSEVDKGAEPDRKRSRNREAELELDTEAEAEQQSNNFISTANNS
DPRATDPVISKLQKRSTRKTEFRKRRRIRPCLSVCQTVEQKCPYLLPADR
APALPTQYAGEPTFLCLDQNIPETGAQLEKSSYGPNDCCYSYCNGPASGI
CTVCQDFGQPGTEEREMAGNSTRRVHNITLSLSSHPGEHARAKSVALALR
NVSQTGSDPDAVETLLDRLPYYASHDGIFYYDEEGEMPHASLSGDCAVVP
AATTRCTIPYYASGTGAVAKPPTQLLVWLSALLGLLSSCGAARQRWSCQW
SSGCGGHRARSRQAVACEANCHEQELVKSRSCSQRSPKVRREKPGQDQDA
ELVAFRTWLWSSSWHAYKLTCSKIRYFSSRSRFKGETRAARSANSKDPSG
LQWSRAAGCTRTRNYRFFYYYNYNINDWWRRWWRCLSSGALASFLDH
BO26640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mid1-PB | 1241 | CG33988-PB | 1..1241 | 1..1241 | 6492 | 100 | Plus |
| Mid1-PA | 1241 | CG33988-PA | 1..1241 | 1..1241 | 6492 | 100 | Plus |
