BO26686.complete Sequence
703 bp assembled on 2012-04-24
GenBank Submission: KX794607
> BO26686.complete
GAAGTTATCAGTCGACATGGCATCCGCTACGGTAAGAAATGTGCCGCTGC
TCGACGATGACACGATACCCTTTGGCGAGGAGGACGAGATGCGGGATCCC
AGTCGCGCGGGTCAGAAATACACGCACCCGTACGTCACCTTCTTCCACCT
GTTCTTCAGGGGCGCCGCCATCCTGATCTATATGTTCTGCGGTTGGTTCA
GCGACTCCTTCATCACCAGCTTCGTTTTCGTGGTGCTCTTCCTGTCCGCC
GACTTCTGGACGGTGAAGAACATCTCGGGCAGATTGCTGGTCGGTCTCCG
CTGGTGGAACTACGTCGACGACGATGGCGTATCGCACTGGGTGTTTGAGT
CAAAGAACTCTGAATCCTACCAGAGTCGGGTCAACAAGAACGAGCAGCGC
ATCTTCTGGCTGGGACTCATCCTCTGTCCCGTCTTCTGGGGCCTCTTCTT
CCTGTTCGCCCTATTCGGCCTGAAGTTCAAATGGCTACTGCTGGTAATGA
TCGCCATTGCGCTGAATGCCGCCAATCTGTATGGCTACGTCAAGTGTAAC
TATGGTGCCAATAAGGATCTGAATTCCGCCGCCACAGACTTTGTGAAAAC
GCAGTTCTTCAAGAATGCTGTGGACATCATGACAAGGCCCAGTGGCGCCC
CACCGCCAACAAATGTACGCCCGACGGGAGTCGTTGCAAGCTTTCTAGAC
CAT
BO26686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5021-RC | 672 | CG5021-PC | 1..669 | 17..685 | 3330 | 99.9 | Plus |
| CG5021-RD | 663 | CG5021-PD | 16..660 | 41..685 | 3210 | 99.8 | Plus |
| CG5021-RA | 657 | CG5021-PA | 1..654 | 17..685 | 3070 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5021-RC | 1088 | CG5021-RC | 140..809 | 16..685 | 3335 | 99.9 | Plus |
| CG5021-RD | 1022 | CG5021-RD | 156..800 | 41..685 | 3210 | 99.8 | Plus |
| CG5021-RA | 933 | CG5021-RA | 140..794 | 16..685 | 3075 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8967566..8967892 | 359..685 | 1620 | 99.7 | Plus |
| 3L | 28110227 | 3L | 8967278..8967516 | 120..358 | 1180 | 99.6 | Plus |
| 3L | 28110227 | 3L | 8967128..8967211 | 41..124 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:46:34 has no hits.
BO26686.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:06:58 Download gff for
BO26686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5021-RA | 130..471 | 17..358 | 100 | == | Plus |
| CG5021-RA | 472..783 | 374..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:38 Download gff for
BO26686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5021-RC | 130..798 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:20 Download gff for
BO26686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5021-RC | 141..809 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:18:04 Download gff for
BO26686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5021-RC | 141..809 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:18:04 Download gff for
BO26686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8966969..8966992 | 17..40 | 100 | -> | Plus |
| 3L | 8967128..8967210 | 41..123 | 100 | -> | Plus |
| 3L | 8967282..8967516 | 124..358 | 100 | -> | Plus |
| 3L | 8967566..8967892 | 359..687 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:20 Download gff for
BO26686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8960069..8960092 | 17..40 | 100 | -> | Plus |
| arm_3L | 8960228..8960310 | 41..123 | 100 | -> | Plus |
| arm_3L | 8960382..8960616 | 124..358 | 100 | -> | Plus |
| arm_3L | 8960666..8960992 | 359..687 | 99 | | Plus |
BO26686.pep Sequence
Translation from 16 to 703
> BO26686.pep
MASATVRNVPLLDDDTIPFGEEDEMRDPSRAGQKYTHPYVTFFHLFFRGA
AILIYMFCGWFSDSFITSFVFVVLFLSADFWTVKNISGRLLVGLRWWNYV
DDDGVSHWVFESKNSESYQSRVNKNEQRIFWLGLILCPVFWGLFFLFALF
GLKFKWLLLVMIAIALNAANLYGYVKCNYGANKDLNSAATDFVKTQFFKN
AVDIMTRPSGAPPPTNVRPTGVVASFLDH
BO26686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5021-PC | 223 | CG5021-PC | 1..223 | 1..223 | 1201 | 100 | Plus |
| CG5021-PD | 220 | CG5021-PD | 1..220 | 1..223 | 1172 | 98.7 | Plus |
| CG5021-PA | 218 | CG5021-PA | 1..218 | 1..223 | 1160 | 97.8 | Plus |
| CG5021-PB | 215 | CG5021-PB | 1..215 | 1..223 | 1131 | 96.4 | Plus |
