BO26703.complete Sequence
1879 bp assembled on 2010-09-13
GenBank Submission: KX793784
> BO26703.complete
GAAGTTATCAGTCGACATGGTTCGGTGGAGCGCGCGGTCGCGGCGCCAAG
CTCGCCAGGATAAAGTGGAGCTATTGGCCAGAAACAACAAAGTGAATGGC
GAGGACGATACCTCCGATAACGCCGCCTTTCGCAACTCGACTGACCTATC
CGACCACGATGAGATCTTCCTCAAGGGATTGCTGCGTAGTAACTCCAACA
CGCCCCACAAGGAACTGATGCTGAATCCGACCGAGCCGCAGCCAGTGCCA
CTATTCCTGCCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCAT
CCGCAAGTTCTCACCCTCGAGGCGCCTGGAGTCGCGAGAACTCGCCAAGC
TTCTCGCCCAGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATA
GGAGCACTCTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCA
ACTAGAGATCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGG
ACGTCCTCAACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTG
CGCCGAGATCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATT
CAAGCAGCTGGTCGTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAAC
AGAGCATGCTGCACGTTGGCGATGTCATCCTAGAGGTGAACGGTACGCCC
GTTCGCACTCCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAA
TCTCACCCTCAAGATCGGGCCGAACGTGGACGAGGAGATCAAGAGCGGTC
GCTATACTTGCTACATGCGTGCCCTTTTCACATACAATCCATCCGAAGAT
TCCTTGCTGCCATGCAGGGATATTGGATTGCCCTTCAAGTCGGGCGACAT
TTTGCAGATCATCAACGTAAAGGATCCCAACTGGTGGCAGGCCAAGAACA
TTACTGCCGAATCTGACAAAATTGGACTCATACCATCCCAAGAGCTGGAG
GAGCGGCGCAAAGCCTTCGTGGCCCCCGAGGCGGACTACGTTCACAAGAT
TGGCATTTGCGGAACAAGAATCTCGAAGCGAAAGCGCAAGACCATGTACC
GATCTGTGGCCAATTGCGAGTTCGACAAGGCGGAGCTGCTGCTCTATGAG
GAGGTCACGCGGATGCCGCCGTTCCGCAGGAAAACCCTGGTTCTCATCGG
TGTTTCCGGTGTGGGAAGACGTACGCTCAAGAATCGGCTGATCAACAGCG
ATGTGGACAAGTTCGGAGCGGTCATTCCACATACCAGTCGCCCCAAGCGC
GCCTTGGAGGAGAACGGCAGTAGCTACTGGTTCATGGACCGCGAGGAAAT
GGAAGAGGCCGTGCGGAACAACGAGTTCCTGGAGTACGGCGAGCACAATG
GCAATCTGTACGGCACGCATTTGCAGTCCATCAAGGATGTGATCAACAGT
GGGCGCATGTGCATCCTGGATTGTGCACCGAATGCCCTGAAGATCCTGCA
CAACAGCCAGGAACTGATGCCTTTTGTCATCTTTGTGGCAGCGCCTGGCA
TGGAGCAGCTCAAGACCATCTATGCGGATCGCAGGGCCACGGGCTCCAAC
CGGAATTTATCTTTTGATCGCCAGAGTTCCATAAGATTCAGCTCCAGACG
CGCCCGTACGCTCGAGTCCCTAGCGTCGTTGTATGAGGACGACGACCTTG
TCGCCACCGTCGAGGAGAGCAGCTTCGTCCAGCGCAAGTATGAGAAATAC
TTCGACATGGTCATCGTGAACGAGGACTTCGATGAGACGTTCCGCCAGGT
GGTGGAAACGCTGGATCAGATGAGCCACGAGGAGCAGTGGGTGCCTGTCA
ACTGGATCTACGCAAGCTTTCTAGACCAT
BO26703.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vari-RD | 1848 | CG9326-PD | 1..1845 | 17..1861 | 9195 | 99.9 | Plus |
| vari-RF | 1410 | CG9326-PF | 355..1407 | 809..1861 | 5250 | 99.9 | Plus |
| vari-RC | 1410 | CG9326-PC | 355..1407 | 809..1861 | 5250 | 99.9 | Plus |
| vari-RF | 1410 | CG9326-PF | 1..291 | 518..808 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vari-RD | 2717 | CG9326-RD | 285..2129 | 17..1861 | 9195 | 99.9 | Plus |
| vari-RF | 2379 | CG9326-RF | 739..1791 | 809..1861 | 5250 | 99.9 | Plus |
| vari-RC | 2320 | CG9326-RC | 680..1732 | 809..1861 | 5250 | 99.9 | Plus |
| vari-RF | 2379 | CG9326-RF | 88..675 | 221..808 | 2925 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20791230..20791664 | 808..374 | 2175 | 100 | Minus |
| 2L | 23513712 | 2L | 20789721..20790052 | 1612..1281 | 1660 | 100 | Minus |
| 2L | 23513712 | 2L | 20790125..20790335 | 1280..1070 | 1040 | 99.5 | Minus |
| 2L | 23513712 | 2L | 20789250..20789425 | 1861..1686 | 880 | 100 | Minus |
| 2L | 23513712 | 2L | 20790391..20790558 | 1069..902 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 20792113..20792267 | 374..220 | 760 | 99.4 | Minus |
| 2L | 23513712 | 2L | 20796653..20796758 | 122..17 | 530 | 100 | Minus |
| 2L | 23513712 | 2L | 20790622..20790720 | 907..809 | 495 | 100 | Minus |
| 2L | 23513712 | 2L | 20796037..20796135 | 220..122 | 495 | 100 | Minus |
| 2L | 23513712 | 2L | 20789585..20789660 | 1688..1613 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:59:41 has no hits.
BO26703.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:10 Download gff for
BO26703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RD | 283..2127 | 17..1863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:24 Download gff for
BO26703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RD | 285..2129 | 17..1863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:28:46 Download gff for
BO26703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RD | 285..2129 | 17..1863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:28:46 Download gff for
BO26703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20790391..20790552 | 908..1069 | 100 | <- | Minus |
| 2L | 20790622..20790720 | 809..907 | 100 | <- | Minus |
| 2L | 20789248..20789423 | 1688..1863 | 98 | <- | Minus |
| 2L | 20789586..20789660 | 1613..1687 | 100 | <- | Minus |
| 2L | 20789721..20790052 | 1281..1612 | 100 | <- | Minus |
| 2L | 20790125..20790335 | 1070..1280 | 99 | <- | Minus |
| 2L | 20791230..20791664 | 374..808 | 100 | <- | Minus |
| 2L | 20792114..20792266 | 221..373 | 99 | <- | Minus |
| 2L | 20796037..20796134 | 123..220 | 100 | <- | Minus |
| 2L | 20796653..20796758 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:24 Download gff for
BO26703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20790391..20790552 | 908..1069 | 100 | <- | Minus |
| arm_2L | 20790622..20790720 | 809..907 | 100 | <- | Minus |
| arm_2L | 20789248..20789423 | 1688..1863 | 98 | <- | Minus |
| arm_2L | 20789586..20789660 | 1613..1687 | 100 | <- | Minus |
| arm_2L | 20789721..20790052 | 1281..1612 | 100 | <- | Minus |
| arm_2L | 20790125..20790335 | 1070..1280 | 99 | <- | Minus |
| arm_2L | 20791230..20791664 | 374..808 | 100 | <- | Minus |
| arm_2L | 20792114..20792266 | 221..373 | 99 | <- | Minus |
| arm_2L | 20796037..20796134 | 123..220 | 100 | <- | Minus |
| arm_2L | 20796653..20796758 | 17..122 | 100 | | Minus |
BO26703.pep Sequence
Translation from 16 to 1879
> BO26703.pep
MVRWSARSRRQARQDKVELLARNNKVNGEDDTSDNAAFRNSTDLSDHDEI
FLKGLLRSNSNTPHKELMLNPTEPQPVPLFLPAHLNNKPICDDIIRKFSP
SRRLESRELAKLLAQPHFRALLRAHDEIGALYEQRLKAAGGSTSQLEIAS
QRQTGGYLFTEDVLNTKMPVETIKMVGLRRDPSKPLGLTVELDEFKQLVV
ARILAGGVIDKQSMLHVGDVILEVNGTPVRTPDELQVEVSRAKENLTLKI
GPNVDEEIKSGRYTCYMRALFTYNPSEDSLLPCRDIGLPFKSGDILQIIN
VKDPNWWQAKNITAESDKIGLIPSQELEERRKAFVAPEADYVHKIGICGT
RISKRKRKTMYRSVANCEFDKAELLLYEEVTRMPPFRRKTLVLIGVSGVG
RRTLKNRLINSDVDKFGAVIPHTSRPKRALEENGSSYWFMDREEMEEAVR
NNEFLEYGEHNGNLYGTHLQSIKDVINSGRMCILDCAPNALKILHNSQEL
MPFVIFVAAPGMEQLKTIYADRRATGSNRNLSFDRQSSIRFSSRRARTLE
SLASLYEDDDLVATVEESSFVQRKYEKYFDMVIVNEDFDETFRQVVETLD
QMSHEEQWVPVNWIYASFLDH
BO26703.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vari-PD | 615 | CG9326-PD | 1..615 | 1..615 | 3173 | 100 | Plus |
| vari-PB | 636 | CG9326-PB | 1..636 | 1..615 | 3141 | 96.7 | Plus |
| vari-PE | 611 | CG9326-PE | 1..611 | 1..615 | 2987 | 92.8 | Plus |
| vari-PF | 469 | CG9326-PF | 1..469 | 168..615 | 2284 | 95.5 | Plus |
| vari-PC | 469 | CG9326-PC | 1..469 | 168..615 | 2284 | 95.5 | Plus |
