BO26712.complete Sequence
2131 bp assembled on 2010-09-13
GenBank Submission: KX796713
> BO26712.complete
GAAGTTATCAGTCGACATGAGCGTTTTGCGGGAGGAAACGACAACTTCCA
GCCAGAGGGAGATAAGCACAAACGGCGGTGGGTTGGATTTCCCCGCAGAA
GTGACGTCGCTGATTGCTGGCAACAGCTTTTGCTTAACGCCAGGAAATAA
CGGCGGGATCGGTGCCCAGAAAAAGGTCACTACTGGAGCGGGTCTGAACA
GTACACAGAGAGCTACGGATGCCACCAAGCGCAAGAAACTAAGGTCGCGT
AACGTACCACCTTCCCCATTGGCCCAAAAAACTGAAGCAGCGGCGACCTC
TCTTAACCAAACGAACATCGGTGAGGTCAAGAGAACCGATATTAACTATT
CCAACGATCACCTTGATGCCTGGTTGGAGAGCTGTTTACGTGATGCCACC
AACGCCCAATTGTCTTCTTCATCTGAGTTTTTGGACTTCATACCGCCCAC
AGCACCAGCTCATAAGCAAATGTTTTTGACTCAACAGCAGCAGCTGCCGC
AGCTTAAACAGCAACTACAGCAGCAGAGGCAACAGGAATTTTCGAAGCGA
ACCCAGCCTTACGGAGTGGGTCCAGGCACACCGTTTAGCCTGGGGATACA
GCGCAATTCGAACTCTCTTAGCCATCGATATCCGATGCTCTTCCCACCCC
AGAGCCTTAACAGCTATGGTGATGGTGGCCAGGAGTTTGCAAGCTTGCCT
CCCCTGAACAACATGATGGGAGGGCCGGAAGGGCTTGGGTGCGATCAGGA
ACCGAATTCGACGGATGTGCTGGATGGCAGCGAAAGCAATCCCAACTTTA
CCAAGGGATTTCGGTTCAGCGATCCGTGCCTACTGAACCCCTCCGATAAT
GACTCTAAGCTGAGTGGCCAGAATACACCAGAGTGTCGAAATGTGAACAA
CAATGGCAGTGGCTGTGATCTGGCACATCAAAACAAATTTTTCGCGGCTC
TAATGGAACAAATAAACATATTGCACGACACCAATTCCAAGATCTGCCGG
AATTTGCATAATACAAAAGTTGATATCGAAGCTTTAAAGCACTCCCCTAA
TAGCCAGCACTGGGCAGGTGTAGGCTTTGGGGGCATGCGGCACCGTAGAG
ATAGCTTAAGCGGGCTAAGCACACAAAGTCAACCTCTTATTCTTGGCAGT
GGATTGGGAGGGACACACAGCCCAGCGCCCACATTTCACTCAGGCGCCTA
CACTCCAGGAATGATGACGGATGTCGTGCGGGAAGTGAAGGAGGCAGCGC
GCATACGCGAAGATGCACTGCTAAGTCGAGTAAAATTAATGGTTGAAGAA
CGTCAGTGTTCCTTAAACGAGGGAAATGTCCGAATTCTGAGAGATATAGA
CGATCTAAAGACCCAAGTAATGCAGTTGCGACTGGAGAAAAAGGAGACTA
ACAAACGCCTCTCACATCTGGAATCCGAAAACAAGTGCCTTCGTCAAGCT
CTGGCCGGTTGTTATAACCAGCGGCCAATCAGTAACGACATTATTTACGA
AAATGACCGATCCCATGGATTCCGAAAGCCATTTCCGAATGGGGGTGGCG
GCGGAGTTGTGGGTTCCGGTGCCCTCGGAATACGACGGGCAAAATCTTTA
AACCTTCATTATGGAACAATGCATCAAACGCCTATCCAAACGACACACTC
TTTGGAAGAGGACGACGAAATAGAAGAGGAGCAGTTAGTAGAGCAAGTAG
GACTGGACGGAGAAGAATTATCCCTGACTGGCAACAACAGTTTATCGTGT
TTGAACATCGGTCATCAATCTCCCTCCAACTTAACGCCTCACTCACAGAT
ACCTAAATCAGAAAAGCAAGCAGTTAGAAGCCCTCCCTCTTTTGCGCTGG
CTTCTGACCAGATCAATCCGGGAATTCCACCGCCATTGCTACCACGAAAG
AAGGACCACGCTCATCTAAAGCGGGAGCGCAGCGAGGCGGCCTCCGTACG
TAAGGAGACAAATCAACGTATAATTGCCCTTGAGAAATTGGTTGAAGACC
TAAGTGACCAGGTGAGAGGTAAGACAAAGAGGAACCCGACCGTATCAAGC
ACTGCAGCGGACATAACGCTATCATCGAAATTCAGCGTGGCGGACGCTCC
GATTACGGACTTAGCAAGCTTTCTAGACCAT
BO26712.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9795-RE | 2211 | CG9795-PE | 110..2208 | 15..2113 | 10495 | 100 | Plus |
CG9795-RD | 2100 | CG9795-PD | 1..2097 | 17..2113 | 10485 | 100 | Plus |
CG9795-RF | 2082 | CG9795-PF | 110..2072 | 15..1977 | 9815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9795-RE | 2573 | CG9795-RE | 214..2312 | 15..2113 | 10495 | 100 | Plus |
CG9795-RD | 2825 | CG9795-RD | 180..2278 | 15..2113 | 10495 | 100 | Plus |
CG9795-RF | 2390 | CG9795-RF | 214..2176 | 15..1977 | 9815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4324871..4325489 | 1359..1977 | 3095 | 100 | Plus |
3R | 32079331 | 3R | 4323229..4323622 | 211..604 | 1970 | 100 | Plus |
3R | 32079331 | 3R | 4323952..4324164 | 807..1019 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 4323687..4323889 | 605..807 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 4321850..4322047 | 15..212 | 990 | 100 | Plus |
3R | 32079331 | 3R | 4324335..4324511 | 1018..1194 | 885 | 100 | Plus |
3R | 32079331 | 3R | 4325697..4325832 | 1978..2113 | 680 | 100 | Plus |
3R | 32079331 | 3R | 4324584..4324672 | 1190..1278 | 445 | 100 | Plus |
3R | 32079331 | 3R | 4324729..4324811 | 1278..1360 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6849 | 450..537 | 181 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..6922 | 482..535 | 171 | 79.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6848 | 450..557 | 155 | 61.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1124..1184 | 482..543 | 155 | 76.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2362 | 482..537 | 154 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2399 | 482..538 | 150 | 73.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6911 | 447..548 | 150 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6858 | 447..534 | 147 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2420 | 482..538 | 141 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6787 | 482..538 | 141 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6808 | 482..538 | 141 | 71.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1079..1135 | 482..538 | 141 | 71.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3364 | 482..555 | 136 | 64.9 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 639..715 | 559..483 | 133 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2820..2870 | 482..535 | 128 | 74.1 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 672..726 | 535..481 | 122 | 69.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2374 | 482..534 | 121 | 69.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1079..1162 | 447..535 | 118 | 62.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2763..2856 | 441..533 | 116 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2832 | 482..524 | 116 | 74.4 | Plus |
BO26712.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:11 Download gff for
BO26712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9795-RD | 175..2271 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:26 Download gff for
BO26712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9795-RD | 182..2278 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:28:48 Download gff for
BO26712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9795-RD | 182..2278 | 17..2115 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:28:48 Download gff for
BO26712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4324337..4324510 | 1020..1193 | 100 | -> | Plus |
3R | 4324588..4324672 | 1194..1278 | 100 | -> | Plus |
3R | 4324730..4324811 | 1279..1360 | 100 | -> | Plus |
3R | 4321852..4322047 | 17..212 | 100 | -> | Plus |
3R | 4323231..4323622 | 213..604 | 100 | -> | Plus |
3R | 4323687..4323889 | 605..807 | 100 | -> | Plus |
3R | 4323953..4324164 | 808..1019 | 100 | -> | Plus |
3R | 4324873..4325489 | 1361..1977 | 100 | -> | Plus |
3R | 4325697..4325832 | 1978..2115 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:26 Download gff for
BO26712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 150059..150232 | 1020..1193 | 100 | -> | Plus |
arm_3R | 150310..150394 | 1194..1278 | 100 | -> | Plus |
arm_3R | 150452..150533 | 1279..1360 | 100 | -> | Plus |
arm_3R | 147574..147769 | 17..212 | 100 | -> | Plus |
arm_3R | 148953..149344 | 213..604 | 100 | -> | Plus |
arm_3R | 149409..149611 | 605..807 | 100 | -> | Plus |
arm_3R | 149675..149886 | 808..1019 | 100 | -> | Plus |
arm_3R | 150595..151211 | 1361..1977 | 100 | -> | Plus |
arm_3R | 151419..151554 | 1978..2115 | 98 | | Plus |
BO26712.pep Sequence
Translation from 16 to 2131
> BO26712.pep
MSVLREETTTSSQREISTNGGGLDFPAEVTSLIAGNSFCLTPGNNGGIGA
QKKVTTGAGLNSTQRATDATKRKKLRSRNVPPSPLAQKTEAAATSLNQTN
IGEVKRTDINYSNDHLDAWLESCLRDATNAQLSSSSEFLDFIPPTAPAHK
QMFLTQQQQLPQLKQQLQQQRQQEFSKRTQPYGVGPGTPFSLGIQRNSNS
LSHRYPMLFPPQSLNSYGDGGQEFASLPPLNNMMGGPEGLGCDQEPNSTD
VLDGSESNPNFTKGFRFSDPCLLNPSDNDSKLSGQNTPECRNVNNNGSGC
DLAHQNKFFAALMEQINILHDTNSKICRNLHNTKVDIEALKHSPNSQHWA
GVGFGGMRHRRDSLSGLSTQSQPLILGSGLGGTHSPAPTFHSGAYTPGMM
TDVVREVKEAARIREDALLSRVKLMVEERQCSLNEGNVRILRDIDDLKTQ
VMQLRLEKKETNKRLSHLESENKCLRQALAGCYNQRPISNDIIYENDRSH
GFRKPFPNGGGGGVVGSGALGIRRAKSLNLHYGTMHQTPIQTTHSLEEDD
EIEEEQLVEQVGLDGEELSLTGNNSLSCLNIGHQSPSNLTPHSQIPKSEK
QAVRSPPSFALASDQINPGIPPPLLPRKKDHAHLKRERSEAASVRKETNQ
RIIALEKLVEDLSDQVRGKTKRNPTVSSTAADITLSSKFSVADAPITDLA
SFLDH
BO26712.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9795-PE | 736 | CG9795-PE | 38..736 | 1..699 | 3638 | 100 | Plus |
CG9795-PD | 699 | CG9795-PD | 1..699 | 1..699 | 3638 | 100 | Plus |
CG9795-PF | 693 | CG9795-PF | 38..691 | 1..654 | 3422 | 100 | Plus |
CG9795-PA | 501 | CG9795-PA | 1..493 | 152..644 | 2603 | 100 | Plus |