BO26723.complete Sequence
1639 bp assembled on 2010-09-13
GenBank Submission: KX798198
> BO26723.complete
GAAGTTATCAGTCGACATGAGCGTACGGAAGAAAACTTGGGTAAGATGTG
CCTTCAGCGAGATGAACTTGACCACCAGTCCTGCTCCTTCGGAATCCACG
CCTGCGAAGCGCACAAGAAGTGCAAGCAATGTGAGCAGCTCCAGAGTATC
GAGGTCGAGAACTCCAAGCATAAATACAAAGCCAATACAGATTCCGGACG
TGGACTCAGTCGATCTTACTGCCATGGATGATGACCAGGATGCGGACATC
ACTGTGCCACCGCCAGAAGTCAAAGAAAACTGGATGGAAAGCTTTGAGCC
AGCCACCAGCGACGATTTGGCGGTGCATCCAAAGAAGGTCGGAGAACTAC
GCGATTGGCTGCGTCACTGCGAAGCGGTGCGCAAGAAGTTCCCGGCTCAA
ATGTGTCTACTTACCGGGCCCACTGGTGCTGGCAAAACCACCACGTTGCG
AGTCCTGGCCAAGGAGTTCGGCTACCAGCTGCAGGAGTGGATCAATCCTA
TCGATTGTGAGGTGGTCAACACCTTGGGTGATCAAACGACTGGCGCCTCC
TATGTGGGCTCCCATCTGGAGGCCTTTAAAAGCTTTCTGCTCCGTGCCTC
GCGATACAAATCCTTGCTGGACTCGCAAAATAAGAGACTGCTTCTTGTCG
AGGACTTTCCCAACGTCCTGCTCAGCGATAAGGAGGTCAACTTTGAAGAG
TTACTAGAAGAGTACACGGCGTATGGCAAATCTCCCCTGGTGTTCATCGT
TGCCGATGCCAAATCTCGAGGATTGAATATCAGCTACCGCCTCTTTCCAG
ACCAACTGAAGGCCAAACATCGCATCGAGCACATCAGTTTCAATGCTATT
GCATCTACAATCATGCAAAAGTCAATGAAAACCTTCTGCTCCGTAATGCA
GCAGAATAAAGCTACTTACAAGGTGCCCTCGACCGCTGTTGTTGACTCAA
TAGTTGTCGGTGCCCAGGGCGACATAAGAAATGCGTTAATTAATTTACAT
TTGAGCTCTTTAAAGGGAGTTTCCAGCATGCCGACCAAACAGCTAAATGT
CAGTGTGTCCGCAAAAGGTCGTAAGAAGAAAATGCAAAGTACTTTAAAGT
CAATTGGTAGAGATGAATCAATTACTCTGATGCACGCACTTGGAAGAGTA
TTAAATCCTAAGTTTAATGAGGACAAAACTATGTTACACAGCCCGGAGGA
AATAACCGAAGCCTTTAATACAGAGCCCAGGAATTTTGTGAATTTTGTAT
ATGCCAACTATCTGCCGCATTTTAAGGAAATCGATGATGTCGTGACCGCC
ATAAATGACTTGGGCCTATCAGATTGCATGCTCAACGAGTACAGAGATGA
TAATTTGTCTGTGATGGGCTTAAACGTTGCCATACGAGGAGTTATGATGT
CCAATACGTGCCCTGTCAGCGGATGGATGCCTGTTCGAGGACCCAAGCGA
ATCAATATACAGCCACAGGCAACTTTGGCCGAACAAAGACTAGTGGGTGT
GGGCTACGCGGGCATTGCCAGGACGCTCTACGCCACGGAGTACAGCTCAT
TAGTTAAGTTAATAGCAGGCAAGCCTGTGGATACTACTTCAAGCCAAAGC
ACAGACTCAAAACAAGACTTTGCAAGCTTTCTAGACCAT
BO26723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad17-RA | 1608 | CG7825-PA | 1..1605 | 17..1621 | 8010 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad17-RA | 1823 | CG7825-RA | 49..1653 | 17..1621 | 8010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14662403..14663081 | 708..30 | 3395 | 100 | Minus |
| 3R | 32079331 | 3R | 14661858..14662316 | 1167..709 | 2280 | 99.8 | Minus |
| 3R | 32079331 | 3R | 14661346..14661803 | 1621..1164 | 2275 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:59:36 has no hits.
BO26723.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:09 Download gff for
BO26723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad17-RA | 44..1648 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:21 Download gff for
BO26723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad17-RA | 44..1648 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:28:44 Download gff for
BO26723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad17-RA | 49..1653 | 17..1623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:28:44 Download gff for
BO26723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14661344..14661803 | 1164..1623 | 99 | <- | Minus |
| 3R | 14661862..14662316 | 709..1163 | 100 | <- | Minus |
| 3R | 14662403..14663079 | 32..708 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:21 Download gff for
BO26723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10487066..10487525 | 1164..1623 | 99 | <- | Minus |
| arm_3R | 10487584..10488038 | 709..1163 | 100 | <- | Minus |
| arm_3R | 10488125..10488801 | 32..708 | 100 | <- | Minus |
BO26723.pep Sequence
Translation from 16 to 1639
> BO26723.pep
MSVRKKTWVRCAFSEMNLTTSPAPSESTPAKRTRSASNVSSSRVSRSRTP
SINTKPIQIPDVDSVDLTAMDDDQDADITVPPPEVKENWMESFEPATSDD
LAVHPKKVGELRDWLRHCEAVRKKFPAQMCLLTGPTGAGKTTTLRVLAKE
FGYQLQEWINPIDCEVVNTLGDQTTGASYVGSHLEAFKSFLLRASRYKSL
LDSQNKRLLLVEDFPNVLLSDKEVNFEELLEEYTAYGKSPLVFIVADAKS
RGLNISYRLFPDQLKAKHRIEHISFNAIASTIMQKSMKTFCSVMQQNKAT
YKVPSTAVVDSIVVGAQGDIRNALINLHLSSLKGVSSMPTKQLNVSVSAK
GRKKKMQSTLKSIGRDESITLMHALGRVLNPKFNEDKTMLHSPEEITEAF
NTEPRNFVNFVYANYLPHFKEIDDVVTAINDLGLSDCMLNEYRDDNLSVM
GLNVAIRGVMMSNTCPVSGWMPVRGPKRINIQPQATLAEQRLVGVGYAGI
ARTLYATEYSSLVKLIAGKPVDTTSSQSTDSKQDFASFLDH
BO26723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad17-PA | 535 | CG7825-PA | 1..535 | 1..535 | 2738 | 100 | Plus |
