BO26729.complete Sequence
2653 bp assembled on 2010-09-13
GenBank Submission: KX794534
> BO26729.complete
GAAGTTATCAGTCGACATGGGTGACAAAGACAAACTGATTTCTGATGAGC
CAATCGAAGATGCCGTTAGATCGGCATCCTCTAAAAAAATCAAAAACCAG
GAACAATACTTACGAGGACCCTGGTATTTGGCCACTGGTTTTCTACTGTT
TTGGGCACTCCTCTTCTCGGCCGTGGTATTACCACTCTTTTACCGCATTC
CCACAGGATTGACCATTGAGGATGCATCCAAGGGCGTCTTTATCGCCGAA
CGAGCCCAAAGCAATCTTTACAAATTAGCCGAAATCGGTACCAAAGTCGT
TGGCAGTGATAACAATGAGAACAAAACTGTTGACTATCTGATGGGTCTAG
TGAACGAGATACAGGAGAATTGCCTGGATGACTACTTCGACATCGAAGTC
GATTTGCAAGAGGTCTCGGGATCCTATATTCATTGGACCATGGTCAATAT
GTACCAGGGCGTTCAGAATATTGTGATCAAACTGAGTCCCAAGAATACCA
CGAGTACCACTTACCTGCTCGTCAACAGTCACTTCGATTCCAAGCCGACT
AGTCCATCTGCTGGCGATGCTGGTCAGATGGTTGTTGCCATCCTGGAGGT
CCTGCGAGTGATGTGCTCAACCAAGCAAGCCATTAGGCATCCAGTCGTCT
TTCTACTGAACGGAGCCGAGGAGAATCCACTACAAGCTTCGCATGGCTTC
ATTACCCAACACAAATGGGCTAAAAACTGCAAGGTGGTTCTCAATTTGGA
TGCAGCTGGCAATGGCGGTAGTGATATAGTGTTCCAAACTGGACCTAATA
GCCCTTGGCTTGTAGAAAAATACAAAGAAAATGCACCACACTATCTGGCT
ACCACAATGGCTGAGGAAATCTTCCAAACAGGCATCCTGCCCTCCGACAC
TGATTTTGCTATCTTTGTCAAGTATGGTAATCTTATTGGTTTGGACATGG
CCAAGTTTATCAATGGTTTCGCCTATCACACCAAGTACGATCAATTCTCC
AATATTCCCAGAGGATCCATACAAAATACGGGCGATAATTTGCTTGGTCT
GGTGCGATCCATAGCCAATTCTACGGAACTGGATAACACAGAGGCTTATG
CCACAGGACATGCCATCTTTTTCGATGTCCTGGGACTGTACTTCATTAGC
TATACGGAGAGCAATGGCGTTATTCTCAATTATTCCGTGGCCGGAGTGGC
ACTTGTCCTGATTTTCTTATCCATTTGGCGTACATCAAGCATATCCCGTG
TGTCCATAGGACACGTTCTCTGCTGGTTCATTTTGATCTTTGTGCTGCAG
ATCATAGCTTTTGTACTGGGACTCGGACTGCCCATAGTCGTAGCCTATGT
TTTCGATAAGTACGGACTATCCATCACTTACTTCAGCACTCCAGTCCTGC
TAATTGGCCTCTATATTTGCCCGAGTCTATTGGGATTGAGCTTGCCATCC
TACATCTACCTGAAGTTGCAACGAAGTGAAAAGGTCGGATTCGCCCAACA
TCTGCAGCTGGTTCTCCATGGACACGCTGCAGTGCTGGCTATCTTGGACA
TTGGATTGACCGTTTATGGACTGCGTAGCGCCTATGTGCCCACCTGGACA
CTCATCTTCTACGTCATTCCCTTGGCCGTCAATCTGTTGACCACTTTGCA
TGATCGCGGCTTTTCCTGGACCGGTGTGCTCAAGATATTCCAAGTAGTTC
CCTTCCTTTACAATAGCTATTTGATTTACTGTTTCGTGGTGACTCTCATA
CCCATGATGGGTCGTTTTGGCCGAGCAACTAATCCGGATTTGATTATATC
GGCTTTGTGTGCTTTGGGAACCATTTTGGCTTTGGGTTTCGTGATACCCC
TAGTTAACATGTTCCGACGCCCCAGTCTGATCCTGCTCACCTTGTTGGCC
ATAAGCGCTGTGACCATTTACACGGCTAGCTCCACCCAAATTGGTTTTCC
ATACCGTCCAAAGACCAACGTTCAGCGACTTCCCTACCTGCATGTACGAC
GAATCTTCTACGAATACGATGGCACAGTTGTGAAGAATGACTCCGGCTAT
CTGTTCAACTTCCAGGATCGTCGGGGACCAGCACCCCTGAAACTGTCCAA
GTTGAATACGACTGGATTGGTCAGCATTGCTGCGGACTGTGATACGGTTA
TGATGTGCGGATTTCCTCTATATGATCACCGATGGGTTAAGAATCGTCTG
CAGATAATGTGGCTGCCAAGAGAAGAGGAAATCATTACGCCATATGAGCC
GAAACTTGAGCTATTGTCCAAAACGGAACTGGGAAACAATACACTGCGCA
TGAATTTCCAATCAGCGACTACGGATCATGCCAGTGTGTTTATCCAGCCA
CTTGAAGATGTTATCATTTCCAACTGGAGCCTGCCCACGAGTTACATTGG
CCAGCAGGATACCTCCCATATGTACTTCTCATATGGCAAGAACAACACGG
CATTGACTTTCTTTATTGACTTTTATAAACTGGATGCCGACTTTGCCGTA
CCCTTGTGTCAGATCGGATTGGCTGTCCATTTTATTGGCAACAAAGGCGA
TGCAATCAGTCAGGAGTTTGCCAAGAAGATACCATCATTTGCCGCTGCAG
TGGATTGGCCAGCTTCCTACCAACGTTACATTTTCGCAAGCTTTCTAGAC
CAT
BO26729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10073-RA | 2622 | CG10073-PA | 1..2619 | 17..2635 | 13095 | 100 | Plus |
| CG10073-RC | 2646 | CG10073-PC | 45..2643 | 37..2635 | 12995 | 100 | Plus |
| CG10081-RB | 2622 | CG10081-PB | 425..976 | 441..992 | 480 | 72.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10073-RA | 2751 | CG10073-RA | 57..2675 | 17..2635 | 13095 | 100 | Plus |
| CG10073-RC | 2747 | CG10073-RC | 73..2671 | 37..2635 | 12995 | 100 | Plus |
| CG10081-RB | 2732 | CG10081-RB | 470..1021 | 441..992 | 480 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19381755..19382451 | 37..733 | 3485 | 100 | Plus |
| 2R | 25286936 | 2R | 19384182..19384668 | 1990..2476 | 2435 | 100 | Plus |
| 2R | 25286936 | 2R | 19383044..19383430 | 1092..1478 | 1935 | 100 | Plus |
| 2R | 25286936 | 2R | 19383489..19383784 | 1478..1773 | 1480 | 100 | Plus |
| 2R | 25286936 | 2R | 19384731..19384889 | 2477..2635 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 19382839..19382995 | 938..1094 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 19383978..19384125 | 1843..1990 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 19382654..19382776 | 818..940 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 19382511..19382595 | 733..817 | 425 | 100 | Plus |
| 2R | 25286936 | 2R | 19383834..19383912 | 1765..1843 | 365 | 97.5 | Plus |
| 2R | 25286936 | 2R | 19387854..19388131 | 1493..1770 | 280 | 73.4 | Plus |
| 2R | 25286936 | 2R | 19359536..19359845 | 424..733 | 260 | 72.3 | Plus |
| 2R | 25286936 | 2R | 19377602..19377688 | 647..733 | 240 | 85.1 | Plus |
| 2R | 25286936 | 2R | 12360234..12360330 | 637..733 | 215 | 81.4 | Plus |
| 2R | 25286936 | 2R | 12356445..12356532 | 633..720 | 185 | 80.7 | Plus |
Blast to na_te.dros performed 2014-11-28 08:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2935..2998 | 332..396 | 115 | 66.2 | Plus |
BO26729.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:03 Download gff for
BO26729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10073-RA | 61..2679 | 17..2637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:10 Download gff for
BO26729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10073-RA | 57..2675 | 17..2637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:28:36 Download gff for
BO26729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10073-RA | 57..2675 | 17..2637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:28:36 Download gff for
BO26729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19384731..19384889 | 2477..2637 | 98 | | Plus |
| 2R | 19381676..19381696 | 17..37 | 100 | -> | Plus |
| 2R | 19381756..19382450 | 38..732 | 100 | -> | Plus |
| 2R | 19382511..19382595 | 733..817 | 100 | -> | Plus |
| 2R | 19382654..19382774 | 818..938 | 100 | -> | Plus |
| 2R | 19382840..19382994 | 939..1093 | 100 | -> | Plus |
| 2R | 19383046..19383429 | 1094..1477 | 100 | -> | Plus |
| 2R | 19383489..19383784 | 1478..1773 | 100 | -> | Plus |
| 2R | 19383843..19383912 | 1774..1843 | 100 | -> | Plus |
| 2R | 19383979..19384125 | 1844..1990 | 100 | -> | Plus |
| 2R | 19384183..19384668 | 1991..2476 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:10 Download gff for
BO26729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15269181..15269201 | 17..37 | 100 | -> | Plus |
| arm_2R | 15269261..15269955 | 38..732 | 100 | -> | Plus |
| arm_2R | 15270016..15270100 | 733..817 | 100 | -> | Plus |
| arm_2R | 15270159..15270279 | 818..938 | 100 | -> | Plus |
| arm_2R | 15270345..15270499 | 939..1093 | 100 | -> | Plus |
| arm_2R | 15270551..15270934 | 1094..1477 | 100 | -> | Plus |
| arm_2R | 15270994..15271289 | 1478..1773 | 100 | -> | Plus |
| arm_2R | 15271348..15271417 | 1774..1843 | 100 | -> | Plus |
| arm_2R | 15271484..15271630 | 1844..1990 | 100 | -> | Plus |
| arm_2R | 15271688..15272173 | 1991..2476 | 100 | -> | Plus |
| arm_2R | 15272236..15272394 | 2477..2637 | 98 | | Plus |
BO26729.pep Sequence
Translation from 16 to 2653
> BO26729.pep
MGDKDKLISDEPIEDAVRSASSKKIKNQEQYLRGPWYLATGFLLFWALLF
SAVVLPLFYRIPTGLTIEDASKGVFIAERAQSNLYKLAEIGTKVVGSDNN
ENKTVDYLMGLVNEIQENCLDDYFDIEVDLQEVSGSYIHWTMVNMYQGVQ
NIVIKLSPKNTTSTTYLLVNSHFDSKPTSPSAGDAGQMVVAILEVLRVMC
STKQAIRHPVVFLLNGAEENPLQASHGFITQHKWAKNCKVVLNLDAAGNG
GSDIVFQTGPNSPWLVEKYKENAPHYLATTMAEEIFQTGILPSDTDFAIF
VKYGNLIGLDMAKFINGFAYHTKYDQFSNIPRGSIQNTGDNLLGLVRSIA
NSTELDNTEAYATGHAIFFDVLGLYFISYTESNGVILNYSVAGVALVLIF
LSIWRTSSISRVSIGHVLCWFILIFVLQIIAFVLGLGLPIVVAYVFDKYG
LSITYFSTPVLLIGLYICPSLLGLSLPSYIYLKLQRSEKVGFAQHLQLVL
HGHAAVLAILDIGLTVYGLRSAYVPTWTLIFYVIPLAVNLLTTLHDRGFS
WTGVLKIFQVVPFLYNSYLIYCFVVTLIPMMGRFGRATNPDLIISALCAL
GTILALGFVIPLVNMFRRPSLILLTLLAISAVTIYTASSTQIGFPYRPKT
NVQRLPYLHVRRIFYEYDGTVVKNDSGYLFNFQDRRGPAPLKLSKLNTTG
LVSIAADCDTVMMCGFPLYDHRWVKNRLQIMWLPREEEIITPYEPKLELL
SKTELGNNTLRMNFQSATTDHASVFIQPLEDVIISNWSLPTSYIGQQDTS
HMYFSYGKNNTALTFFIDFYKLDADFAVPLCQIGLAVHFIGNKGDAISQE
FAKKIPSFAAAVDWPASYQRYIFASFLDH
BO26729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10073-PA | 873 | CG10073-PA | 1..873 | 1..873 | 4531 | 100 | Plus |
| CG10073-PC | 881 | CG10073-PC | 16..881 | 8..873 | 4494 | 100 | Plus |
| CG10081-PA | 875 | CG10081-PA | 1..875 | 1..873 | 2877 | 61.7 | Plus |
| CG10081-PB | 873 | CG10081-PB | 1..873 | 1..873 | 2854 | 61.5 | Plus |
| CG30047-PA | 879 | CG30047-PA | 31..879 | 33..873 | 2201 | 49.2 | Plus |
