BO26730.complete Sequence
1801 bp assembled on 2010-09-13
GenBank Submission: KX799013
> BO26730.complete
GAAGTTATCAGTCGACATGTCGGGCTTACGCAAAACATCCATTGCGCTGA
TGAGGCGCTCCACATCCAGCACCACCATACTGCCGCATTCCGGGGGCGTT
GGTGGTGCCGTGTCGCCGCCCAGCAGCGGAGTGGGCGTGGCCACGGAAAT
TGAAAAATCAATTGCAATGCAACGGCTGCGGACGGGCGAGTCGTCGAATC
CGAAGAAATTAAATGTCAGCCAACAGCCCGTTACATCAGTAGCAACAACT
AGGACTACAGCAAGCTCACTACCAGCAGAAACCACTTCTTCACCGGCAGC
TGCAGTGCGTCCTTATTCGGAAGTACCGGGTCCATACCCCTTGCCACTGA
TTGGCAACTCCTGGCGCTTCGCTCCACTAATAGGAACATACAAAATCAGC
GACTTGGACAAGGTCATGAATGAGCTGCATGTCAACTATGGGAAGATGGC
CAAAGTGGGCGGTCTCATTGGTCATCCCGATCTGCTGTTCGTCTTCGATG
GCGATGAGATTCGTAACATATTCAAGAAGGAGGAGGCGATGCCGCATCGA
CCGTCGATGCCCTCACTGCGCCACTACAAGGGCGACCTGCGACGCGATTT
CTTTGGCGATGTGGCCGGCCTAATTGGCGTGCATGGCCCCAAGTGGGAGG
CCTTCAGACAGGAGGTGCAGCACATCCTGCTGCAGCCGCAGACCGCCAAG
AAGTACATTCCGCCGCTAAATGACATTGCCAGCGAGTTTATGGGCCGTAT
CGAGCTGATGCGCGACGAAAAGGACGAGCTGCCAGCCAATTTCCTGCACG
AGCTCTACAAATGGGCCTTGGAATCTGTCGGTCGCGTTTCCCTGGACACG
AGATTGGGCTGTTTGTCCCCCGAGGGCAGCGAAGAGGCCCAACAGATCAT
AGAGGCTATCAACACATTTTTCTGGGCCGTTCCGGAATTGGAGCTGCGAA
TGCCGCTATGGCGAATATATCCCACCAAGGCATACAGGAGCTTCGTCAAG
GCTTTGGATCAGTTCACAGCAATTTGCATGAAGAACATTGGCAAGACCAT
GGACAAGGCCGATGCCGATGAGGCTAGAGGATTGTCCAAATCCGAGGCGG
ATATATCCATTGTGGAGCGGATAGTGCGAAAGACGGGCAATCGCAAACTG
GCTGCCATTTTGGCACTGGATTTGTTTTTGGTTGGAGTCGATACTACCTC
TGTGGCAGCCTCCTCCACAATCTATCAGCTGGCCAAAAACCCAGATAAAC
AGAAAAAACTCTTCGATGAACTGCAGAAGGTGTTTCCCCATCGAGAGGCG
GACATCAACCAGAATGTCCTGGAGCAAATGCCCTACCTGCGAGCCTGTGT
AAAGGAAACTCTACGAATGCGACCCGTGGTGATTGCCAATGGACGGAGTC
TTCAGTCGGATGCTGTCATCAATGGTTACCACGTGCCCAAAGGCACACAC
GTTATCTTTCCCCATTTGGTTGTTTCAAACGATCCCGCATATTTCCCAGA
ACCCAAGCGTTTTCTGCCCGAGCGCTGGCTGAAACAGTCCACGGATGCAG
CTGGCTGCCCCCATGCCAACCAAAAAATTCACCCATTCGTGAGTTTGCCC
TTTGGCTTTGGGCGTCGCATGTGCGTGGGTCGTCGGTTCGCCGAAATCGA
GTTGCACACGCTGCTGGCCAAGATCTTCCGCAAATACAAGGTCTCGTACA
ATTCCGGAGAGTTTGTGTACCGTGTGAACTCCACGTACATTCCGCAGTCG
CCTCTGAATTTCAAACTAACGCTGAGGGACGAGGCAAGCTTTCTAGACCA
T
BO26730.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp49a1-RE | 1770 | CG18377-PE | 1..1767 | 17..1783 | 8835 | 100 | Plus |
| Cyp49a1-RD | 1770 | CG18377-PD | 1..1767 | 17..1783 | 8835 | 100 | Plus |
| Cyp49a1-RA | 1770 | CG18377-PA | 1..1767 | 17..1783 | 8835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp49a1-RE | 2591 | CG18377-RE | 485..2251 | 17..1783 | 8835 | 100 | Plus |
| Cyp49a1-RD | 2297 | CG18377-RD | 191..1957 | 17..1783 | 8835 | 100 | Plus |
| Cyp49a1-RA | 2351 | CG18377-RA | 245..2011 | 17..1783 | 8835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10455925..10456127 | 219..17 | 1015 | 100 | Minus |
| 2R | 25286936 | 2R | 10451223..10451418 | 1020..825 | 980 | 100 | Minus |
| 2R | 25286936 | 2R | 10450979..10451153 | 1195..1021 | 875 | 100 | Minus |
| 2R | 25286936 | 2R | 10450745..10450914 | 1365..1196 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 10455522..10455696 | 384..210 | 845 | 98.9 | Minus |
| 2R | 25286936 | 2R | 10455284..10455451 | 549..382 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 10449880..10450004 | 1672..1548 | 625 | 100 | Minus |
| 2R | 25286936 | 2R | 10452088..10452204 | 747..631 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 10449690..10449802 | 1783..1671 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 10450421..10450526 | 1550..1445 | 530 | 100 | Minus |
| 2R | 25286936 | 2R | 10452297..10452379 | 631..549 | 415 | 100 | Minus |
| 2R | 25286936 | 2R | 10450592..10450671 | 1444..1365 | 400 | 100 | Minus |
| 2R | 25286936 | 2R | 10451923..10452000 | 824..747 | 390 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1102..1163 | 233..294 | 121 | 66.1 | Plus |
BO26730.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:05 Download gff for
BO26730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp49a1-RD | 191..1957 | 17..1785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:14 Download gff for
BO26730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp49a1-RA | 245..2011 | 17..1785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:28:39 Download gff for
BO26730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp49a1-RA | 245..2011 | 17..1785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:28:39 Download gff for
BO26730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10455284..10455449 | 384..549 | 100 | <- | Minus |
| 2R | 10455523..10455686 | 220..383 | 100 | <- | Minus |
| 2R | 10455925..10456127 | 17..219 | 100 | | Minus |
| 2R | 10449687..10449800 | 1673..1785 | 98 | <- | Minus |
| 2R | 10449880..10450001 | 1551..1672 | 100 | <- | Minus |
| 2R | 10450421..10450526 | 1445..1550 | 100 | <- | Minus |
| 2R | 10450592..10450670 | 1366..1444 | 100 | <- | Minus |
| 2R | 10450745..10450914 | 1196..1365 | 100 | <- | Minus |
| 2R | 10450979..10451153 | 1021..1195 | 100 | <- | Minus |
| 2R | 10451223..10451418 | 825..1020 | 100 | <- | Minus |
| 2R | 10451923..10451999 | 748..824 | 100 | <- | Minus |
| 2R | 10452088..10452204 | 631..747 | 100 | <- | Minus |
| 2R | 10452298..10452378 | 550..630 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:14 Download gff for
BO26730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6337192..6337305 | 1673..1785 | 98 | <- | Minus |
| arm_2R | 6337385..6337506 | 1551..1672 | 100 | <- | Minus |
| arm_2R | 6337926..6338031 | 1445..1550 | 100 | <- | Minus |
| arm_2R | 6338097..6338175 | 1366..1444 | 100 | <- | Minus |
| arm_2R | 6338250..6338419 | 1196..1365 | 100 | <- | Minus |
| arm_2R | 6338484..6338658 | 1021..1195 | 100 | <- | Minus |
| arm_2R | 6338728..6338923 | 825..1020 | 100 | <- | Minus |
| arm_2R | 6339428..6339504 | 748..824 | 100 | <- | Minus |
| arm_2R | 6339593..6339709 | 631..747 | 100 | <- | Minus |
| arm_2R | 6339803..6339883 | 550..630 | 100 | <- | Minus |
| arm_2R | 6342789..6342954 | 384..549 | 100 | <- | Minus |
| arm_2R | 6343028..6343191 | 220..383 | 100 | <- | Minus |
| arm_2R | 6343430..6343632 | 17..219 | 100 | | Minus |
BO26730.pep Sequence
Translation from 16 to 1801
> BO26730.pep
MSGLRKTSIALMRRSTSSTTILPHSGGVGGAVSPPSSGVGVATEIEKSIA
MQRLRTGESSNPKKLNVSQQPVTSVATTRTTASSLPAETTSSPAAAVRPY
SEVPGPYPLPLIGNSWRFAPLIGTYKISDLDKVMNELHVNYGKMAKVGGL
IGHPDLLFVFDGDEIRNIFKKEEAMPHRPSMPSLRHYKGDLRRDFFGDVA
GLIGVHGPKWEAFRQEVQHILLQPQTAKKYIPPLNDIASEFMGRIELMRD
EKDELPANFLHELYKWALESVGRVSLDTRLGCLSPEGSEEAQQIIEAINT
FFWAVPELELRMPLWRIYPTKAYRSFVKALDQFTAICMKNIGKTMDKADA
DEARGLSKSEADISIVERIVRKTGNRKLAAILALDLFLVGVDTTSVAASS
TIYQLAKNPDKQKKLFDELQKVFPHREADINQNVLEQMPYLRACVKETLR
MRPVVIANGRSLQSDAVINGYHVPKGTHVIFPHLVVSNDPAYFPEPKRFL
PERWLKQSTDAAGCPHANQKIHPFVSLPFGFGRRMCVGRRFAEIELHTLL
AKIFRKYKVSYNSGEFVYRVNSTYIPQSPLNFKLTLRDEASFLDH
BO26730.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp49a1-PE | 589 | CG18377-PE | 1..589 | 1..589 | 3054 | 100 | Plus |
| Cyp49a1-PD | 589 | CG18377-PD | 1..589 | 1..589 | 3054 | 100 | Plus |
| Cyp49a1-PA | 589 | CG18377-PA | 1..589 | 1..589 | 3054 | 100 | Plus |
| Cyp49a1-PC | 415 | CG18377-PC | 1..415 | 175..589 | 2154 | 99.5 | Plus |
| Cyp301a1-PA | 553 | CG8587-PA | 41..551 | 73..585 | 1152 | 43.9 | Plus |
