BO26734.complete Sequence
2890 bp assembled on 2010-12-13
GenBank Submission: KX799353
> BO26734.complete
GAAGTTATCAGTCGACATGGGTAGTATCTATGGGCTTCTGCCGCTGCTTC
TGCTTTTGTGTCGCCTCCACGACGGCGGATCAAAGTTCGTTAGTCCTACG
CGACACACCGATCTCAGCAGCACCATTATCATTGTGGAGGACGCCAAAGC
CTGTTTCCGACGAGTCCTGGCCGGAAAACGGATAGCACCACACTTCGTGC
GCCGCTCCATATCCTGCGAGCGGGTGGAGGAGTGCATGCGGGAGTGTGGT
CGGGAGCGGCGTTTCATGTGCGAAGGCTTCAACTATAGGCTGGATCCCTC
GGGTCACGGGCAAGGCGACTGCGAGCTGGTCGAGATGCCACTGGCCCAGA
TGGACCTGTACTCCAGTCCGGATCGACGTGATGCCAATTTGCTGAGGCAT
CCCGACTACGATTACTACGAGAGGGACCGCAATGCGCCGAGCAGCTGTCG
CCGCAGCGCTTGCCAGGATTGTTCCAAGGGTCCGGTTAGCAGTCAGCCTG
TTTACTTCAAGCCGAGTGGGGGAGCAGGGGGATATGGCGACCGTGACCGG
GATCGGGACAGAGACAGGGATCACTATCGTCCGCATAGCAACACGGCCGT
GGACCATTATCGTGGTCCATCTGGTCCTCCGGGCTCCTCCTCTTACGAAC
ACCGACCTCCCTACTCCTCCGAGTTCCATGGATCGCACAGCTCATCCTCC
TCGGCATCCTCCTATGAATTCTCCTCGCATGGCTCGGGATCTAGCTCGGG
TTCCAGTTCCGGATACTTTGGTCACACCCCACCCAGTAGCTATGGCGGCG
ACCATCCCTACGTGGATCGCCATGACTCTCCGCATTATCGCCCCGGAAGA
CCGGATCGTTGGGAAACTTTGCCGAGTAGCTCCGGTTACGATAGCTCCGC
GTACAGGCCGCCACGTCCGGAAACGGATCGCATCGACAAGTACCGTCCAC
CGTATCGTCCTGGCTCGGATTACTCGCCCTATCGACCACCAAGTCGCCCG
TCGCACAACTACCTCGATCGCGATGGAGCAGGACCTCCAGGTCCTCCGGG
GTCCAACAAGAAGCCAAACAAATTTGTTCCCTATTTGATTGGCGGCGAGG
ACAACTGGGGACACTACGGTGGTAGTTATGGTGGCAGCAGCAAGCACTCC
TCTTCATCATCCTCATCCTACTGGGGTCTCACCGAATCCCAGAGGCGCAA
GGATCAGCACGACTTCAACTACTTCCAGCTGGGTGCACCACATCGCGAGT
CCAACTCGGTGCTCAGCTATCCAGGCTCTGGCTACGAGGACGATTACCCG
CGGCGGCGCAACGATTATCGTCAACAGTGGACTCGGCGAGCGGGACCAGA
TGAATGCTCGGCAAAAACCAGCGAGGGATTCCGGCTGCACAAGACGGCCG
TGCGGCACGCCTACAACGTGCCAACCTTGACGGAGTGCGAACGCCTCTGT
TCGGATCCGCGGCCCAGCTTCGTCTGCCACACTTTCAGCTATCGGTACAA
CCAGGCGGGCAGGGACAACTGCATGCTCTGCGACCGGCCCATCAACATGC
TCGACTACTACGTGGACATCGAGCCGGACCGGGACTACGACATCTACTCC
ATGGCGGATGATATGGACGTGTGCCGGCAGCCTCCACCACGACGACATGA
TACCGCTGGTCCTAGCACAGCCATTTCTGATCCGAGAAACGCACAATGCT
TCTTCCGCGCAATCGATGCCACACGATTCTTCAAGTCGATTGTCCGCGAT
TCGCTGACCGTGCGATCTGTGGGCGAATGCGAGATGGAGTGCATCCGCTC
GACCAAGTTCACCTGCCGGGCATTTGCCTTCCGATACGGCCAGCAGCGAC
ATGCCGGAGTCATAGACAACTGCCAGCTGAGTGACTGGCCAGTGCGGGAC
ATGGACAAGGAGCGGCATCTCATCCTGGACGCAGCATTTGATATCTTCGA
GCGAGCCAGCTATGGGCATGGATGTGAAATCCAGCCAATAGTGGATGAGA
AGCACAAGAAACTCTGCTATTTGGGTTACGGATCACCGGCGAGACTGCTT
CCTCCGGCCATCAAGAAAGTGATTTCCGTGCCTTCCGAGATTGCCTGCAA
GAAGGAGTGCATCCGCTTCCGCGAGACGACTCCCTTCAAGTGCTTTGCCT
TCAGCTATGGCTCCCATGCCAGCTCCTTCAACTGTGAACTCTCTGACCTG
GACCAGACCGAGTTGAAACAGGACGTGCACTATGCGCACACCAAGGACCG
TGACTTCTGGCTCTTCGCCTGGAATCCCTTCGACTGGACCTGCCGGGACA
AGGTCAACACTATTGGGGGATCCCGGGTCAACAATGACAGGCGCATGGAT
ATCTTCCGGGAACCGGGCGATGTGGCCTGGCGTCACTACACCGTGTCCGG
AAAGCCCTGCCGCCGGAGCAGTCCCTGCGCCAAGAATCTGATCACGGGCT
TCTACTCCTGCGAGACGGATGCCTCCGAGGTCGGCTCCTGGGACTACTGC
TGCAAGGCGGACCACCCGTGCGGCTACAGCAAGGGATTCGATTATCCATG
GTGCTTTGTGGGCGATGAGTCGGACCAGTGGCGCAAGTGCAGCGATCGGT
ACTTCCCCGGAAAGAACGGCACCCAGCCGACCCACTCGCATCTGGGACTG
CCCAGTGCCAAGGAGAAACAGAAACATCCACATCCACATCACTCCCAGCC
GGCGACGGCGGCCAGCAGCGAATACAGCCAGCACCCACCTCGACCCGGCG
GACTGCAGAGCCTCAGTGACTTCGCCGCCGCGCGTCTGTGGCCCGTGACC
TACCTGTACAGTGAGGGCCCGCCCAATGCCACCGAGTTCAGCAACTTCGT
CGACTGCAACAAGGAGTCGTGCGCAAGCTTTCTAGACCAT
BO26734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42326-RD | 2859 | CG42326-PD | 1..2856 | 17..2872 | 14280 | 100 | Plus |
| CG42326-RE | 4131 | CG42326-PE | 1402..4128 | 146..2872 | 13635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42326-RD | 3400 | CG42326-RD | 235..3090 | 17..2872 | 14280 | 100 | Plus |
| CG42326-RE | 5244 | CG42326-RE | 2208..4934 | 146..2872 | 13635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8576185..8577389 | 1352..148 | 6025 | 100 | Minus |
| 2R | 25286936 | 2R | 8575475..8575817 | 1694..1352 | 1715 | 100 | Minus |
| 2R | 25286936 | 2R | 8573678..8574000 | 2872..2550 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 8575068..8575389 | 2012..1691 | 1595 | 99.7 | Minus |
| 2R | 25286936 | 2R | 8574588..8574795 | 2367..2160 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 8574075..8574261 | 2552..2366 | 935 | 100 | Minus |
| 2R | 25286936 | 2R | 8574857..8575004 | 2160..2013 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 8578125..8578257 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:40:21 has no hits.
BO26734.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:56 Download gff for
BO26734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42326-RD | 230..3085 | 17..2874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:17 Download gff for
BO26734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42326-RD | 235..3090 | 17..2874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:56 Download gff for
BO26734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42326-RD | 235..3090 | 17..2874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:56 Download gff for
BO26734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8573676..8573999 | 2551..2874 | 99 | <- | Minus |
| 2R | 8574077..8574260 | 2367..2550 | 100 | <- | Minus |
| 2R | 8574589..8574794 | 2161..2366 | 100 | <- | Minus |
| 2R | 8574857..8575004 | 2013..2160 | 100 | <- | Minus |
| 2R | 8575068..8575385 | 1695..2012 | 100 | <- | Minus |
| 2R | 8575475..8575816 | 1353..1694 | 100 | <- | Minus |
| 2R | 8576185..8577387 | 150..1352 | 100 | <- | Minus |
| 2R | 8578125..8578257 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:17 Download gff for
BO26734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4461181..4461504 | 2551..2874 | 99 | <- | Minus |
| arm_2R | 4461582..4461765 | 2367..2550 | 100 | <- | Minus |
| arm_2R | 4462094..4462299 | 2161..2366 | 100 | <- | Minus |
| arm_2R | 4462362..4462509 | 2013..2160 | 100 | <- | Minus |
| arm_2R | 4462573..4462890 | 1695..2012 | 100 | <- | Minus |
| arm_2R | 4462980..4463321 | 1353..1694 | 100 | <- | Minus |
| arm_2R | 4463690..4464892 | 150..1352 | 100 | <- | Minus |
| arm_2R | 4465630..4465762 | 17..149 | 100 | | Minus |
BO26734.pep Sequence
Translation from 16 to 2890
> BO26734.pep
MGSIYGLLPLLLLLCRLHDGGSKFVSPTRHTDLSSTIIIVEDAKACFRRV
LAGKRIAPHFVRRSISCERVEECMRECGRERRFMCEGFNYRLDPSGHGQG
DCELVEMPLAQMDLYSSPDRRDANLLRHPDYDYYERDRNAPSSCRRSACQ
DCSKGPVSSQPVYFKPSGGAGGYGDRDRDRDRDRDHYRPHSNTAVDHYRG
PSGPPGSSSYEHRPPYSSEFHGSHSSSSSASSYEFSSHGSGSSSGSSSGY
FGHTPPSSYGGDHPYVDRHDSPHYRPGRPDRWETLPSSSGYDSSAYRPPR
PETDRIDKYRPPYRPGSDYSPYRPPSRPSHNYLDRDGAGPPGPPGSNKKP
NKFVPYLIGGEDNWGHYGGSYGGSSKHSSSSSSSYWGLTESQRRKDQHDF
NYFQLGAPHRESNSVLSYPGSGYEDDYPRRRNDYRQQWTRRAGPDECSAK
TSEGFRLHKTAVRHAYNVPTLTECERLCSDPRPSFVCHTFSYRYNQAGRD
NCMLCDRPINMLDYYVDIEPDRDYDIYSMADDMDVCRQPPPRRHDTAGPS
TAISDPRNAQCFFRAIDATRFFKSIVRDSLTVRSVGECEMECIRSTKFTC
RAFAFRYGQQRHAGVIDNCQLSDWPVRDMDKERHLILDAAFDIFERASYG
HGCEIQPIVDEKHKKLCYLGYGSPARLLPPAIKKVISVPSEIACKKECIR
FRETTPFKCFAFSYGSHASSFNCELSDLDQTELKQDVHYAHTKDRDFWLF
AWNPFDWTCRDKVNTIGGSRVNNDRRMDIFREPGDVAWRHYTVSGKPCRR
SSPCAKNLITGFYSCETDASEVGSWDYCCKADHPCGYSKGFDYPWCFVGD
ESDQWRKCSDRYFPGKNGTQPTHSHLGLPSAKEKQKHPHPHHSQPATAAS
SEYSQHPPRPGGLQSLSDFAAARLWPVTYLYSEGPPNATEFSNFVDCNKE
SCASFLDH
BO26734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42326-PD | 952 | CG14748-PA | 1..952 | 1..952 | 5332 | 100 | Plus |
| CG42326-PE | 1376 | CG42326-PE | 464..1376 | 40..952 | 5118 | 99.6 | Plus |
