BO26740.complete Sequence
3520 bp assembled on 2010-09-16
GenBank Submission: KX794030
> BO26740.complete
GAAGTTATCAGTCGACATGGACTCCTACTTCGACTCGGCCATCGAGTACA
ATCGATCCAACCCCATCAGCCTGGCCAGGACCAGCAGCCAGGCCCAAACC
GTGCAGAACGAGAAGAACTGGGAGTGGTCGTACCTTGTGAGAAAATGTCG
CAACCTGGAGCTGGAGGACTCGTACGACCTATACATGCGTCGCCTGCGCG
TCGGCTACCTGTCGCTGTTCATCTTCATCCACGTGGCGGTGACGGTGATC
CACACGCTGCTGCTGCTGACCACGCCGGAGATCAAGTACGTGTACGTGGA
CATGGTGGCCTACATGTGCTCCGGCCTGGTCATCTGGGTGGTGCTGGGCG
TGAACTTTCGCAGCGAGCTGGTGAGCAAGCACGGCTGGGTGGTCTACGCC
ACCTCCTGGCTGGCGGTGTGTGTAATGGTCCTGATGGACATCGGACTGAA
TGTTTACCACGCCACCAGCCACAACGACATCCTGAATCCGATCTACGATG
CGTATACGCTGTACGCCATATACATGTTCATGCCGGTGCCGTACCTGCTG
CAGCCGTTTGTCCTTGGATCGGCAGTCACCTTTTGCTACATAATAAACTA
CAGCTTCGTGATCACCGCCAAGGATGACAACCAAATGCACAGCATCCTGA
ACGAGGCCATATACCTGAGCTGTGTCAACCTACTGGGCATTTTCTTTCGC
CTGATGAGGGATATAGCGCTACGCACCACCTTCCTCGATCGCCGGCAGTA
TGTGGAGGAGAATCTCCTGTTGCGCTATGCCAGGGATCAGGAGCGGAGTC
TCTTGCTTAGCATCCTGCCTGCCCAGATCGCCGATCGGCTGCAGGAGGAT
GTGAAGAACCGCATCGAGCGATCCAAGCAGCAGCACCAGCAGCAGTCGCA
GGTGGATCTGCGCAGGAGTGCGGATAGCCAGACCCTTAAAAGGTGGCGAC
AACCGGACCATGGCACCCTCTTCATTGAGCCCCACGAAGATGTCACCGTC
CTCTACGCGGATGTGGTCAACTACACCCACTTGACCACCACCCTGGATGT
GAAGAAGCTAGTGGAGGCTCTGCACGATCTCTTCGTGCGTTTCGACATTG
CCAGCGAGGAGTACAACGTGCTGAGGATCAAGTTCCTGGGCGATTGCTAC
TACTGCGTGGCTGGGCTGGCCAATCCCAATGCGGATCACGCCAAGTGCTG
CGTGGATCTGGGACTGCGTATGATCAAGGACATTCGAGATGTCAGAGAGA
AGCGCCATCTGAATATCGACATGCGAATCGGCGTCCACTCGGGCGATGTC
CTATCCGGCGTAATTGGAGCCGCCAAGTGGCAGTTTGACATATGGTCGAA
GGACGTGGATATTGCCAATCGCCTGGAGGCCACTGGAGCCACAGGACGAG
TGCATGTGAGCCAGAAGACCCTATCCCTGCTGGATGGCGAGTACTTCTTC
GAGGACGGCACCGAAAAGGCTCGAGAGGATCCGGTGCTGCAGAAGCACGG
CATTCGCACCTTCCTTATCAAGTCACTGCGCGCCCCCATGCATGACCCGC
GTCGCAGGATGAGGGAGCGGCAGGTGAAGAAGCTGAGCGAGGCCAGCAAG
GCCAACTTTATGCACAACTCCACGCTCCACCAGTACAACCAGGTGCGCAA
CCAGGCCAAGCTGGAGATGTGTCGCGAGCTGGACAAGATGCCCATCGGCA
GGATACAGCTCACCAAAGTCTTCCGGCGAAGCACTCGGCTCACCCAGGAC
GAAATCGAAGAAGAGACCTTTCGACGCAACATCAGCTCCTGCTGTCTGTT
CTTTCGCATCCGCAACTGGGAGTTCCAGTATATCAAGGAGCCGGATGTGA
TGCTCAAGTACAGCATTGCTTTGGCTTGGGTCATTTACATGGGTCTGCTG
ACCATCCAGCTGCTGAGCAAGGATGCTCGCTATCACTACTGGTACATAGA
TGGCACCACGATTATCCTGCTCACCATGCTGCTGATCGTGTCCTGGTACA
AGAAGCTCTGGATCATGTACATGTCCGATGCGGATGTGTCCTCGCCGAAC
GGCCGGCTCAGTGGCTTCCTCTTCCGCATGTCGGATGAGATGCAGCGCAA
TGTGGTCATCCGGGTGGTGATGTACTTCCTGATCATCTTCTCCTATTGCG
CGGTGGCCATTATGCAAGTGGTGGGATGCAGCAGTGACGAGGACTACGCG
GATCTGGATCCGACCTACGACGAGCGGGTTCAGTGCTTTCATCCTTGGAT
ACTCACCAATTGCATGACCCTGGTAATTGGCATGTCCTTCCTCTTCACGC
GAATCCCCTTCATCATCAAGTCCTGCTTCTCTGCTTTGATAATGATCGGC
TACGCGGTGCTGGTGGTGTCCGAGTTCAACTTCATCTACGCCAACAGCCC
CTCCACCAATGTGAACTTCAACGCCAAGTACTCGCATATCCTGCTGATGA
TCATAACGTTCGGCATTTTTCACTTGATGGAGCGGCAGACGGAGTTCATT
GCCAAAGTGGATTACAACTGGAAACGGCAGCTAATTAAGAAGCAGGAGGA
CGCCCTGATCACCAATGACACCATTAAAGTGCTCCTCACCAATATTCTGC
CCACACATGTTGCCGACTTCTATCTGTCAAATCAACTGCAGAACGAGCTC
TACTACGAGGAGTACGATAATGTGGCCGTGATGTTCGCCTCGATCAAAAA
CTTCGACACCGACAAGATCGGACTGCGGGTGCTCAATGAGATTATCTGCG
ACTTTGACGATGTGTTGAACAAGTACTCGCAGAGTCTGCGCGTGGAGAAG
ATCAAGGTGGCCAACTGGACGTACATGGCGGCCTGTGGCCTAGACGTCTC
TCGTTCGGAGCAGGTGAACGCCCCGCAGATGAAGTTCCGCAACGTTTCCC
TCATGCCCAACGGGCGCAGGAGTCGCTACGACGGAGCACGAAGCTCCAAT
GCGGACGGAGTGCAGCGGGTGCCGTACGGAAACGGCAGCAACATAGCCCT
GGATCTCGACTTGGAGCGGGGTCAGTACGAGGGCAACGTGATCACCAGCG
GGCCGCGCATCAGTAGCACCCACAACGGGAGCAGCAGCAACGAGGTGGTG
CGCGTGATGGCCGAGTTCGCCCTGGACCTGATGCGCACGATGCGCCGCTT
CAACACGGAGAACATGCAGACGGAGTACGAGGGCAGCACCGACTACGGCA
TGCTGAGGATCGGCATCTCGCACGGCAGGGCCATGGCCGGGGTGGTGGGC
ATCTCGAAGCCCCACTATGACATCTGGGGCAATCCCGTGAACATGGCCTC
GCGCATGGACTCCACCGGCGTGCCCGGCCAGATTCAGGTCACCGAGAACA
CGGCGCTTAAGCTGCGCGAGTTTAACATTCAGTGCAACTACCGCGGCATG
ACCTTCGTCAAGGGGCGTGGCAACATTCCCACCTACATCATCGGCATCGA
CAGCGAATACCAGTTCCTGCCACATCGCCCGGCCGCGCCAACCAAAGAAG
ACGCAAGCTTTCTAGACCAT
BO26740.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ACXD-RA | 3489 | CG5712-PA | 1..3486 | 17..3502 | 17415 | 100 | Plus |
ACXD-RB | 1521 | CG5712-PB | 1..1515 | 17..1531 | 7575 | 100 | Plus |
rut-RF | 4524 | CG9533-PF | 3037..3108 | 3257..3328 | 195 | 84.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ACXD-RA | 4112 | CG5712-RA | 526..4012 | 16..3502 | 17420 | 100 | Plus |
ACXD-RB | 4118 | CG5712-RB | 526..4018 | 16..3502 | 17325 | 99.8 | Plus |
rut-RF | 7905 | CG9533-RF | 3415..3486 | 3257..3328 | 195 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2239092..2239916 | 139..963 | 4125 | 100 | Plus |
3L | 28110227 | 3L | 2242881..2243619 | 2764..3502 | 3695 | 100 | Plus |
3L | 28110227 | 3L | 2241619..2241943 | 1924..2248 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 2240757..2241045 | 1244..1532 | 1445 | 100 | Plus |
3L | 28110227 | 3L | 2239978..2240260 | 963..1245 | 1415 | 100 | Plus |
3L | 28110227 | 3L | 2242004..2242273 | 2248..2517 | 1350 | 100 | Plus |
3L | 28110227 | 3L | 2241348..2241563 | 1708..1923 | 1080 | 100 | Plus |
3L | 28110227 | 3L | 2241110..2241286 | 1532..1708 | 885 | 100 | Plus |
3L | 28110227 | 3L | 2242483..2242639 | 2612..2768 | 755 | 98.7 | Plus |
3L | 28110227 | 3L | 2238427..2238550 | 16..139 | 620 | 100 | Plus |
3L | 28110227 | 3L | 2242335..2242429 | 2518..2612 | 475 | 100 | Plus |
X | 23542271 | X | 14794274..14794345 | 3328..3257 | 195 | 84.7 | Minus |
2L | 23513712 | 2L | 12929387..12929469 | 3233..3315 | 190 | 81.9 | Plus |
Blast to na_te.dros performed 2014-11-28 05:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6844 | 3033..3093 | 125 | 67.2 | Plus |
BO26740.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:26:23 Download gff for
BO26740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ACXD-RA | 525..4010 | 17..3504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:06 Download gff for
BO26740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ACXD-RA | 527..4012 | 17..3504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:15:18 Download gff for
BO26740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ACXD-RA | 527..4012 | 17..3504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:15:18 Download gff for
BO26740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2238428..2238550 | 17..139 | 100 | -> | Plus |
3L | 2242005..2242273 | 2249..2517 | 100 | -> | Plus |
3L | 2242335..2242429 | 2518..2612 | 100 | -> | Plus |
3L | 2239093..2239916 | 140..963 | 100 | -> | Plus |
3L | 2239979..2240260 | 964..1245 | 100 | -> | Plus |
3L | 2240759..2241044 | 1246..1531 | 100 | -> | Plus |
3L | 2241110..2241285 | 1532..1707 | 100 | -> | Plus |
3L | 2241348..2241563 | 1708..1923 | 100 | -> | Plus |
3L | 2241619..2241943 | 1924..2248 | 100 | -> | Plus |
3L | 2242484..2242635 | 2613..2764 | 99 | -> | Plus |
3L | 2242882..2243619 | 2765..3504 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:06 Download gff for
BO26740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2242005..2242273 | 2249..2517 | 100 | -> | Plus |
arm_3L | 2242335..2242429 | 2518..2612 | 100 | -> | Plus |
arm_3L | 2242484..2242635 | 2613..2764 | 99 | -> | Plus |
arm_3L | 2238428..2238550 | 17..139 | 100 | -> | Plus |
arm_3L | 2239093..2239916 | 140..963 | 100 | -> | Plus |
arm_3L | 2239979..2240260 | 964..1245 | 100 | -> | Plus |
arm_3L | 2240759..2241044 | 1246..1531 | 100 | -> | Plus |
arm_3L | 2241110..2241285 | 1532..1707 | 100 | -> | Plus |
arm_3L | 2241348..2241563 | 1708..1923 | 100 | -> | Plus |
arm_3L | 2241619..2241943 | 1924..2248 | 100 | -> | Plus |
arm_3L | 2242882..2243619 | 2765..3504 | 99 | | Plus |
BO26740.pep Sequence
Translation from 16 to 3520
> BO26740.pep
MDSYFDSAIEYNRSNPISLARTSSQAQTVQNEKNWEWSYLVRKCRNLELE
DSYDLYMRRLRVGYLSLFIFIHVAVTVIHTLLLLTTPEIKYVYVDMVAYM
CSGLVIWVVLGVNFRSELVSKHGWVVYATSWLAVCVMVLMDIGLNVYHAT
SHNDILNPIYDAYTLYAIYMFMPVPYLLQPFVLGSAVTFCYIINYSFVIT
AKDDNQMHSILNEAIYLSCVNLLGIFFRLMRDIALRTTFLDRRQYVEENL
LLRYARDQERSLLLSILPAQIADRLQEDVKNRIERSKQQHQQQSQVDLRR
SADSQTLKRWRQPDHGTLFIEPHEDVTVLYADVVNYTHLTTTLDVKKLVE
ALHDLFVRFDIASEEYNVLRIKFLGDCYYCVAGLANPNADHAKCCVDLGL
RMIKDIRDVREKRHLNIDMRIGVHSGDVLSGVIGAAKWQFDIWSKDVDIA
NRLEATGATGRVHVSQKTLSLLDGEYFFEDGTEKAREDPVLQKHGIRTFL
IKSLRAPMHDPRRRMRERQVKKLSEASKANFMHNSTLHQYNQVRNQAKLE
MCRELDKMPIGRIQLTKVFRRSTRLTQDEIEEETFRRNISSCCLFFRIRN
WEFQYIKEPDVMLKYSIALAWVIYMGLLTIQLLSKDARYHYWYIDGTTII
LLTMLLIVSWYKKLWIMYMSDADVSSPNGRLSGFLFRMSDEMQRNVVIRV
VMYFLIIFSYCAVAIMQVVGCSSDEDYADLDPTYDERVQCFHPWILTNCM
TLVIGMSFLFTRIPFIIKSCFSALIMIGYAVLVVSEFNFIYANSPSTNVN
FNAKYSHILLMIITFGIFHLMERQTEFIAKVDYNWKRQLIKKQEDALITN
DTIKVLLTNILPTHVADFYLSNQLQNELYYEEYDNVAVMFASIKNFDTDK
IGLRVLNEIICDFDDVLNKYSQSLRVEKIKVANWTYMAACGLDVSRSEQV
NAPQMKFRNVSLMPNGRRSRYDGARSSNADGVQRVPYGNGSNIALDLDLE
RGQYEGNVITSGPRISSTHNGSSSNEVVRVMAEFALDLMRTMRRFNTENM
QTEYEGSTDYGMLRIGISHGRAMAGVVGISKPHYDIWGNPVNMASRMDST
GVPGQIQVTENTALKLREFNIQCNYRGMTFVKGRGNIPTYIIGIDSEYQF
LPHRPAAPTKEDASFLDH
BO26740.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ACXD-PA | 1162 | CG5712-PA | 1..1162 | 1..1162 | 6060 | 100 | Plus |
ACXD-PB | 506 | CG5712-PB | 1..505 | 1..505 | 2627 | 100 | Plus |
ACXC-PA | 1130 | CG5983-PA | 8..1094 | 12..1151 | 1962 | 39.6 | Plus |
ACXE-PB | 1123 | CG17178-PB | 15..1083 | 32..1154 | 1957 | 39.2 | Plus |
ACXA-PA | 1112 | CG17176-PA | 24..1089 | 31..1151 | 1926 | 39.3 | Plus |