BO26756.complete Sequence
1474 bp assembled on 2010-09-13
GenBank Submission: KX795120
> BO26756.complete
GAAGTTATCAGTCGACATGGATATGGAGTATATAACTAGCAGTAGTGGCA
ACATAACTGCCACTACAGAAGCAGATTTCAGTTCATCTTTGGGCGAATCC
AATGTCACGGAATACAATACAACGGAAATGGACGCGAATGAATCAGCTGG
CGAGGATGAGGAGATGCTAAGGATAGCCTTTTTTATAGGGCACTTCGTGC
ATCAATACTATATACCAGTGCTTTGCTGCACGGGCAGCATTGGCAATATC
CTCTCCGTGTTTGTCTTCTTTAGGACCAAGTTGAGAAAGTTGTCCTCCAG
CTTTTACCTGGCCGCTCTCGCAGTGAGCGACACCTGCTTCCTGGCCGGAC
TCTTCGCACAGTGGCTGAACTTCCTCAATGTGGATATCTATAATCAAAAC
TACTTTTGCCAGTTCTTCACGTTCTTCAGCTACCTGGCCAGCTTCTGCTC
CGTCTGGTTTGTGGTGGCCTTCACCGTGGAGCGCTTCATTGCCGTCATCT
ATCCACTGAAGCGCCAGACCATGTGCACCGTGCGCCGGGCCAAGATCGTC
CTGTTTTGTTTGACACTCGTGGGATGTCTGCACTGTCTGCCCTATATAGT
CATTGCCAAGCCGGTGTTTATGCCCAAATTGAACACGACCATTTGCGATC
TCAACTCGGAATACAAAGAACAACTGGCCCTCTTCAACTACTGGGACACC
ATAGTTGTCTATGCGGTGCCCTTCACCACCATCGCCGTTCTGAACACCTG
TACAGGTTGTACGGTGTGGAAGTTCGCCACCGTTCGCCGAACGCTGACCA
TGCACAAGATGAAGCCCCAAACGAACAGCATGCCATCGAACTCGTCGAAC
TCATCGGGCGGAGCCTCATCTGCAGTGGCCTCGTACCGCCTATCGGCATC
GCTGAAGCGCCAGAAGTCGACGGGAACGCATCCAAGTGGACAGCATAATG
TGGCCAACAGGCAGACGGATGATCAGGAGCAGCAACAGCAGTCGCAGCAG
CATCAAATAAACAATTGCCAACACCATTGCGAGATTACGCAGAAACCAGC
CCGTCGCAAGGTGCAAAACTCATCGCAGCTCAAGGTAACCAAAATGCTGC
TAATTGTCTCGACGGTTTTTGTTTGCCTCAATTTGCCCAGCTGCCTGCTG
CGCATCGAGGCCTATTGGGAGACGGAGTCGGCCCGAAACCAGAATTCCAC
AATTGCTTTGCAATATATTTTTCACGCTTTCTTCATCACCAATTTTGGCA
TCAATTTCGTGCTTTACTGCGTCAGTGGACAGAATTTCCGCAAAGCCGTT
TTGAGTATTTTCCGAAGGGTTTCATCCGCTCAACGGGAGGCGGGAAACAC
CCAAGTGACAGTTTCTGAATACTGTCGCAATACTGGCACATCCACACGTC
GTCGAATGATGACGCAACATTGTTGGAACGAAATGCACGAGTTGCATCCA
CTCAAGGCAAGCTTTCTAGACCAT
BO26756.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CNMaR-RA | 1443 | CG33696-PA | 1..1440 | 17..1456 | 7200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CNMaR-RA | 2704 | CG33696-RA | 727..2167 | 16..1456 | 7205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9644835..9645487 | 16..668 | 3265 | 100 | Plus |
3L | 28110227 | 3L | 9650980..9651218 | 811..1049 | 1195 | 100 | Plus |
3L | 28110227 | 3L | 9650344..9650487 | 668..811 | 720 | 100 | Plus |
3L | 28110227 | 3L | 9651604..9651727 | 1048..1171 | 620 | 100 | Plus |
3L | 28110227 | 3L | 9653483..9653603 | 1170..1290 | 605 | 100 | Plus |
3L | 28110227 | 3L | 9658799..9658896 | 1359..1456 | 490 | 100 | Plus |
3L | 28110227 | 3L | 9653722..9653793 | 1290..1361 | 360 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1089..1140 | 972..1026 | 132 | 76.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6849 | 961..1026 | 123 | 65.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1135 | 961..1006 | 122 | 73.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2386 | 972..1026 | 122 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2410 | 955..1026 | 121 | 68 | Plus |
BO26756.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:27 Download gff for
BO26756.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33696-RA | 728..2167 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:40 Download gff for
BO26756.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33696-RA | 728..2167 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:15 Download gff for
BO26756.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CNMaR-RA | 728..2167 | 17..1458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:15 Download gff for
BO26756.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9644836..9645486 | 17..667 | 100 | -> | Plus |
3L | 9650344..9650486 | 668..810 | 100 | -> | Plus |
3L | 9650980..9651218 | 811..1049 | 100 | -> | Plus |
3L | 9651606..9651727 | 1050..1171 | 100 | -> | Plus |
3L | 9653485..9653603 | 1172..1290 | 100 | -> | Plus |
3L | 9653723..9653793 | 1291..1361 | 100 | -> | Plus |
3L | 9658802..9658896 | 1362..1458 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:40 Download gff for
BO26756.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9637936..9638586 | 17..667 | 100 | -> | Plus |
arm_3L | 9643444..9643586 | 668..810 | 100 | -> | Plus |
arm_3L | 9644080..9644318 | 811..1049 | 100 | -> | Plus |
arm_3L | 9644706..9644827 | 1050..1171 | 100 | -> | Plus |
arm_3L | 9646585..9646703 | 1172..1290 | 100 | -> | Plus |
arm_3L | 9646823..9646893 | 1291..1361 | 100 | -> | Plus |
arm_3L | 9651902..9651996 | 1362..1458 | 97 | | Plus |
BO26756.pep Sequence
Translation from 16 to 1474
> BO26756.pep
MDMEYITSSSGNITATTEADFSSSLGESNVTEYNTTEMDANESAGEDEEM
LRIAFFIGHFVHQYYIPVLCCTGSIGNILSVFVFFRTKLRKLSSSFYLAA
LAVSDTCFLAGLFAQWLNFLNVDIYNQNYFCQFFTFFSYLASFCSVWFVV
AFTVERFIAVIYPLKRQTMCTVRRAKIVLFCLTLVGCLHCLPYIVIAKPV
FMPKLNTTICDLNSEYKEQLALFNYWDTIVVYAVPFTTIAVLNTCTGCTV
WKFATVRRTLTMHKMKPQTNSMPSNSSNSSGGASSAVASYRLSASLKRQK
STGTHPSGQHNVANRQTDDQEQQQQSQQHQINNCQHHCEITQKPARRKVQ
NSSQLKVTKMLLIVSTVFVCLNLPSCLLRIEAYWETESARNQNSTIALQY
IFHAFFITNFGINFVLYCVSGQNFRKAVLSIFRRVSSAQREAGNTQVTVS
EYCRNTGTSTRRRMMTQHCWNEMHELHPLKASFLDH
BO26756.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CNMaR-PA | 480 | CG33696-PA | 1..480 | 1..480 | 2525 | 100 | Plus |
Proc-R-PE | 545 | CG6986-PE | 4..170 | 23..182 | 214 | 32.6 | Plus |
Proc-R-PD | 545 | CG6986-PD | 4..170 | 23..182 | 214 | 32.6 | Plus |
Proc-R-PC | 545 | CG6986-PC | 4..170 | 23..182 | 214 | 32.6 | Plus |
Proc-R-PB | 545 | CG6986-PB | 4..170 | 23..182 | 214 | 32.6 | Plus |