BO26758.complete Sequence
2758 bp assembled on 2010-09-17
GenBank Submission: KX796203
> BO26758.complete
GAAGTTATCAGTCGACATGGGAGTTCCAGCATTCTTTCGCTGGCTGAGCC
GGAAGTATCCATCCGTGATAATAGAATGCAATGAAAACAAGCAGGTGGAC
GCGGACACCGGTCGAAACATCTACGAGGACCCCACCTTGCCGAATCCAAA
TGGGATAGAGTTTGACAATCTGTACCTGGACATGAACGGCATCATCCATC
CGTGCACGCATCCGGAGGACAAGCCGGCGCCGAAGAACGAGGACGAGATG
ATGGTGGCCATCTTCGAATGCATCGACCGTCTGTTCGGTATTGTACGTCC
TCGAAAACTGCTCTATATGGCCATCGATGGCGTTGCTCCACGAGCCAAGA
TGAATCAGCAGCGATCTCGTCGCTTCCGAGCGGCCAAGGAAACCACCGAA
AAGCGGCTGGAGATAGCACGGATCCGCGAGGAGCTGCTGAGCCGCGGCTG
CAAGCTGCCACCGGAGAAGGAGAAGGGTGAACACTTTGACTCCAACTGCA
TCACGCCGGGCACCCCGTTCATGGACCGACTGAGCAAGTGTTTGCACTAC
TTTGTTCATGATCGTCAAAACAATAACCCGGCCTGGAAGGGCATCAAGGT
GATCCTGTCGGACGCCAATGTGCCCGGTGAGGGTGAGCACAAGATCATGG
ATTACATTCGCAAGCAGCGTGCCCAGCCTGATCACGATCCCAACACGCAG
CACGTCTTGTGCGGAGCCGACGCCGATCTCATCATGTTGGGTCTGGCCAC
GCACGAGCCCAACTTCACAATCATTCGGGAGGAGTTCCTGCCGAATAAGC
CGCGTCCCTGCGACATCTGCAACGGATTTGGCCACGAGATGGACAAGTGT
GTCGGACTCGGAGCGACTGCGCCAACTAGCGCCAATTTTAAGCCCGATGT
GCCCATAGGCGCCGAGGTAAAGTTCATCTTTGTGCGGCTGAGTGTGCTAC
GCGAGTACCTAAAGCAGACTCTTGAGATGCCGAATCTGCCATTTGAGTAC
AGTTTCGAGCGCGCGTTGGACGACTGGGTGTTCATGTGCTTCTTTGTGGG
CAATGATTTTCTGCCCCACCTGCCTAGCCTGGAGATTCGCGAGGGTGCAG
TAGATCGATTGGTGGAGTTATACAAGAAGTGCGTTTACAAGACAAGGGGC
TATCTCACCGACTCGGGAGATGTAAATCTTGACCGGGTGCAGCTGATTAT
GACCGACTTGGGCAATGCCGAGGACCAGATCTTCAAGAGCCGACAGCGAC
GCGAGGAGCAGTTCAAGGCCAGGGACAAGGCGCGCAAGAGGCAGGAAAGG
AATCAGGACCACGGATCCTTGAATCAGTCTGCTTTTGGCGCCAGCGCCGT
GGGTCCAAACAGCCAGCAAAGGAGCGTCGGCAACTACAAGGAGGAGGCCG
CGGCACTTCGTAATAGAAAACGGACGAGTGACATGGCCAATTTGGATGAC
GAAGATGAGGAGGAGAATAACGACGAGGTGCGATTGTGGGAGGATGGCTT
CAAGGACCGCTACTACGAATCCAAGTTTGACGTGGCACCGGGTAACCAGC
AGTTCCGATACGCTGTAGCCCTGCAGTATGTCCGAGGATTGTGCTGGGTT
CTTAAGTACTACTATCAGGGCTGTGCCTCCTGGAACTGGTACTTCCCATA
CCATTATGCACCCTTCGCATCGGATTTTGTCAACATCCAGGGACTGTCCA
CGATGTTCGAAAAGGGCACAAAGCCGTTTAATCCGCTCGAGCAACTGATG
GGCGTCTTTCCGGCAGCCAGTAGTTCACACGTGCCCGAGCCGTGGGCCAA
GCTCATGTCCGATCCGGAGTCACCGATCATTGACTTCTATCCGGAGGACT
TTAAGATCGATCTGAATGGCAAGAAGTTCGCCTGGCAGGGAGTGGCTCTG
CTGCCGTTCGTCGATGAGAAGCGTCTCTTCAAGGCTTTGGTTCCCTACTA
TGATCAACTTACTGGAGAGGAGGTGAAGCGAAACAAGCGTGGAGACAATT
ACCTGTACATCAGCAATCAGAGTCCGCACTACAAAAAGGTGAAGAAAATC
AGCGAAAAGGATGATGAGAGCGTTTGCAAAGCCATCTCATTTGACGGTAT
GCGCGGCACTTTGGGAAAAACCGAACTAAACACTGCCATCAGCGGCGTTC
TTAAGTCGCCGATTTCCGGGCTATCGGACATTAATGACAATATAACCGTG
ACGACCACGTTCAGGGATCCGGAATACGATGAAGACTACATTTTCGAAGC
GAAGCGCCTCGAAAACGCCGTAGATCCGCCACAGGTGCTGCCAAATGAGC
AGTCTGGTAACAAGCATCGTCCCGTCATCGGTTTTAATAGCCACTTGACC
AGGGCCTACGTTCCGGATAGTGGTCACCGCATGCTGAACGCTGGCATAAG
GAACCAACAGGGTGGCGGTGGCAATGGAGGTGGAGGAGGAGGCTACGGGC
AAGGAGGCGGCTACGGCCAGGGAATAGGCGGAAACCAAGGACAGAGCTAT
CAGAACAATAGCCGAAACTATAACTACAACTACAACAATAACTACAATCA
GCACCAGGGTGGCGGCTATCAAAACAACTACAATAACCGACAGCAGCAGC
AATATGGCCACAATCAGAGATTCAACCAGGACAATTCGAATCAGCAGCAG
CGCAACTTTAACAACTATAATGGTCCAAGGAACAACAACTACCAGCAACA
AGGCGGCAGCAGGCAACAGAATCAGAATTATAGACGGTTTGCAAGCTTTC
TAGACCAT
BO26758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rat1-RB | 2727 | CG10354-PB | 1..2724 | 17..2740 | 13620 | 100 | Plus |
| Rat1-RA | 2727 | CG10354-PA | 1..2724 | 17..2740 | 13620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rat1-RB | 2975 | CG10354-RB | 84..2807 | 17..2740 | 13620 | 100 | Plus |
| Rat1-RA | 3341 | CG10354-RA | 84..2807 | 17..2740 | 13620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6908166..6910889 | 17..2740 | 13620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:40:27 has no hits.
BO26758.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:26:25 Download gff for
BO26758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10354-RA | 80..2803 | 17..2742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:16 Download gff for
BO26758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rat1-RA | 84..2807 | 17..2742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:02 Download gff for
BO26758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rat1-RA | 84..2807 | 17..2742 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:02 Download gff for
BO26758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6908166..6910889 | 17..2742 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:16 Download gff for
BO26758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6908166..6910889 | 17..2742 | 99 | | Plus |
BO26758.pep Sequence
Translation from 16 to 2758
> BO26758.pep
MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFD
NLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLY
MAIDGVAPRAKMNQQRSRRFRAAKETTEKRLEIARIREELLSRGCKLPPE
KEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKGIKVILSDA
NVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNF
TIIREEFLPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAE
VKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLP
HLPSLEIREGAVDRLVELYKKCVYKTRGYLTDSGDVNLDRVQLIMTDLGN
AEDQIFKSRQRREEQFKARDKARKRQERNQDHGSLNQSAFGASAVGPNSQ
QRSVGNYKEEAAALRNRKRTSDMANLDDEDEEENNDEVRLWEDGFKDRYY
ESKFDVAPGNQQFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPYHYAPF
ASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFPAASSSHVPEPWAKLMSDP
ESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQLTG
EEVKRNKRGDNYLYISNQSPHYKKVKKISEKDDESVCKAISFDGMRGTLG
KTELNTAISGVLKSPISGLSDINDNITVTTTFRDPEYDEDYIFEAKRLEN
AVDPPQVLPNEQSGNKHRPVIGFNSHLTRAYVPDSGHRMLNAGIRNQQGG
GGNGGGGGGYGQGGGYGQGIGGNQGQSYQNNSRNYNYNYNNNYNQHQGGG
YQNNYNNRQQQQYGHNQRFNQDNSNQQQRNFNNYNGPRNNNYQQQGGSRQ
QNQNYRRFASFLDH
BO26758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rat1-PB | 908 | CG10354-PB | 1..908 | 1..908 | 4922 | 100 | Plus |
| Rat1-PA | 908 | CG10354-PA | 1..908 | 1..908 | 4922 | 100 | Plus |
| pcm-PA | 1612 | CG3291-PA | 1..581 | 1..664 | 1116 | 38.8 | Plus |
| pcm-PB | 1613 | CG3291-PB | 1..581 | 1..664 | 1116 | 38.8 | Plus |
