BO26774.complete Sequence
700 bp assembled on 2010-08-18
GenBank Submission: KX794069
> BO26774.complete
GAAGTTATCAGTCGACATGACACTAAGATCCAAAGCCATCATGACATCCA
CCAGCGATAAGCGCGAGCATCTGTACAAGATTCTAGTCATTGGTGAACTG
GGCACCGGCAAGACGTCCTTCATTAAGCGCTATGTGCACCAGTTCTTCAG
CCAGAACTACAGGGCCACCATCGGCGTGGACTTCGCCCTGAAAGTGCTGC
AGTGGGACGCCAATACGATAGTGCGCCTCCAGCTGTGGGATATCGCCGGT
CAGGAGAGGTTTGGCAACATGACCCGTGTCTACTACAAGGAGGCGGTGGG
CGCGTTCATCGTTTTTGATGTGACTCGCAGTGGGACTTTCGATTGCGTGA
GCAAGTGGAAGGAAGATCTAGACTCCAAGGTGCAGCTGCCGGACGGCAGT
CCCATTCCGTGCATCCTGCTGGCCAATAAATGCGACCAGGAAAAGCAGGG
CATCATAACGCAGCCCGAGAAGATGGATGAGTATGTGAGGGAGAACGGAT
TTGCCGGTTGGTTTGAGACATCCGCCAAGGAGAATATCAACATCGATGAG
GCAGCTCGTGCCCTCGTGAATAAGATACTCATCAACGATAAGCTGATATC
TGCCGATCTGGCCGATGGCGACAAGTTCAACTTGAGCGCGGCCGATGCAA
CCGGATCGGATGCCAAGAACAAGTGTTCCTGCGCAAGCTTTCTAGACCAT
BO26774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RD | 669 | CG8024-PD | 1..666 | 17..682 | 3330 | 100 | Plus |
| ltd-RC | 1167 | CG8024-PC | 516..1164 | 34..682 | 3245 | 100 | Plus |
| ltd-RE | 1167 | CG8024-PE | 516..1164 | 34..682 | 3245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RD | 1448 | CG8024-RD | 210..875 | 17..682 | 3330 | 100 | Plus |
| ltd-RC | 2347 | CG8024-RC | 1126..1774 | 34..682 | 3245 | 100 | Plus |
| ltd-RE | 2156 | CG8024-RE | 935..1583 | 34..682 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9178830..9179225 | 430..35 | 1980 | 100 | Minus |
| 2R | 25286936 | 2R | 9178606..9178749 | 574..431 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 9178437..9178546 | 682..573 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:57:16 has no hits.
BO26774.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:13 Download gff for
BO26774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RD | 206..871 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:31 Download gff for
BO26774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RD | 210..875 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:28:05 Download gff for
BO26774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RD | 210..875 | 17..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:28:05 Download gff for
BO26774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9178433..9178544 | 575..684 | 98 | <- | Minus |
| 2R | 9178606..9178749 | 431..574 | 100 | <- | Minus |
| 2R | 9178830..9179225 | 35..430 | 100 | <- | Minus |
| 2R | 9186116..9186133 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:31 Download gff for
BO26774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5066335..5066730 | 35..430 | 100 | <- | Minus |
| arm_2R | 5065938..5066049 | 575..684 | 98 | <- | Minus |
| arm_2R | 5066111..5066254 | 431..574 | 100 | <- | Minus |
| arm_2R | 5073621..5073638 | 17..34 | 100 | | Minus |
BO26774.pep Sequence
Translation from 16 to 700
> BO26774.pep
MTLRSKAIMTSTSDKREHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRA
TIGVDFALKVLQWDANTIVRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF
DVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLANKCDQEKQGIITQP
EKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKLISADLAD
GDKFNLSAADATGSDAKNKCSCASFLDH
BO26774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-PD | 222 | CG8024-PD | 1..222 | 1..222 | 1154 | 100 | Plus |
| ltd-PC | 388 | CG8024-PC | 169..388 | 3..222 | 1129 | 98.6 | Plus |
| ltd-PE | 388 | CG8024-PE | 169..388 | 3..222 | 1129 | 98.6 | Plus |
| ltd-PJ | 214 | CG8024-PJ | 1..214 | 9..222 | 1118 | 100 | Plus |
| ltd-PH | 214 | CG8024-PH | 1..214 | 9..222 | 1118 | 100 | Plus |
