BO26790.complete Sequence
436 bp assembled on 2010-08-18
GenBank Submission: KX793767
> BO26790.complete
GAAGTTATCAGTCGACATGTTCCGCTACCTGCTCGTCGCCTCCGCTATCC
TGGCCTGCGCCTACGGTGCCGCCACCTACAACCAGGAAGCTGGTGCCTAC
ATCACAAAGATCGGTTCCGACATCCAGCCCGAGGGCAACTACAACTACCA
ATACGAGACCAGCAACGGCATCGCCGCCCAGGAGTCCGGAATTGGAGGAA
ACCACGCCAACGGAGGCTTCTCGTGGTACTCGCCCGAGGGTGAGCTCGTC
CAGATCTCGTACGTGGCCGACGAGAACGGTTACCAGCCCCAGGGAGCTCT
CCTGCCCACTCCTCCTCCAATCCCAGCTGCCATCCTTAGGAGCTTGGAGT
ACATCCGCACCCATCCCCAATACGTCGAGCAGGAGTACCGCAGGCCCGCC
CTCAGGAAGGTCTTTGGTGCAAGCTTTCTAGACCAT
BO26790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67Fa1-RA | 405 | CG7941-PA | 1..402 | 17..418 | 1995 | 99.8 | Plus |
| Cpr67Fa2-RA | 405 | CG18349-PA | 1..402 | 17..418 | 1785 | 96.3 | Plus |
| Lcp4-RB | 339 | CG2044-PB | 225..296 | 265..336 | 255 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67Fa1-RA | 554 | CG7941-RA | 60..461 | 17..418 | 1995 | 99.8 | Plus |
| Cpr67Fa2-RA | 565 | CG18349-RA | 45..456 | 7..418 | 1790 | 95.6 | Plus |
| Lcp4-RB | 527 | CG2044-RB | 274..345 | 265..336 | 255 | 90.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10890218..10890607 | 29..418 | 1935 | 99.7 | Plus |
| 3L | 28110227 | 3L | 10892019..10892407 | 30..418 | 1735 | 96.4 | Plus |
| 2R | 25286936 | 2R | 8437977..8438048 | 265..336 | 255 | 90.3 | Plus |
| 2R | 25286936 | 2R | 8435769..8435840 | 265..336 | 240 | 88.9 | Plus |
| 3L | 28110227 | 3L | 7093638..7093705 | 302..369 | 205 | 86.8 | Plus |
| 2R | 25286936 | 2R | 8430808..8430913 | 334..229 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:57:56 has no hits.
BO26790.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:21 Download gff for
BO26790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa1-RA | 59..455 | 22..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:44 Download gff for
BO26790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa1-RA | 65..461 | 22..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:28:18 Download gff for
BO26790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa1-RA | 65..461 | 22..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:28:18 Download gff for
BO26790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10890215..10890607 | 26..420 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:44 Download gff for
BO26790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10883315..10883707 | 26..420 | 98 | | Plus |
BO26790.pep Sequence
Translation from 16 to 436
> BO26790.pep
MFRYLLVASAILACAYGAATYNQEAGAYITKIGSDIQPEGNYNYQYETSN
GIAAQESGIGGNHANGGFSWYSPEGELVQISYVADENGYQPQGALLPTPP
PIPAAILRSLEYIRTHPQYVEQEYRRPALRKVFGASFLDH
BO26790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67Fa1-PA | 134 | CG7941-PA | 1..134 | 1..134 | 710 | 100 | Plus |
| Cpr67Fa2-PA | 134 | CG18349-PA | 1..134 | 1..134 | 704 | 97.8 | Plus |
| Cpr65Ec-PA | 127 | CG8634-PA | 4..117 | 2..118 | 335 | 53.8 | Plus |
| Cpr65Eb-PA | 179 | CG8638-PA | 8..122 | 5..118 | 312 | 52.2 | Plus |
| Cpr67Fb-PA | 122 | CG18348-PA | 1..114 | 1..117 | 296 | 50.4 | Plus |
