BO26802.complete Sequence
2158 bp assembled on 2010-09-13
GenBank Submission: KX799285
> BO26802.complete
GAAGTTATCAGTCGACATGAGCGAGTACACAAGCATTCTGCAGCGCGAGT
TTCCCAAAATCGACCACGAGCTGCTCACCTATGTCGTTGGCGTGCTCACC
GGAAGCGAGGAGGACTTCGAAAGCGGCGATGACATCTTCGAAGCGGTGGG
CGACATCCTGCAGAGCGTCGACTGTGATAGGTCGGAGGAGAGTGTACGTA
CGCTTTGCGAGCAGTTCCTCAACATCATGAAGAACAACGAGGTCAACGTG
GAGCGAAAGGTTCTCAACGCGCCGGTCAACATCGAGGAGATGGCCAAGAA
CATGGAGCGGCTGGACAAGGATATGCAAAGCATCTGGGTGGCCAACAAAG
ATGGCGCCAATAAAGTGGACTCCAAGAAACTAGGAAAGGCGGAGGCCAAG
CTGCAGCAGAAGCAGGAGAAACGGCAGGAGGTGAACAAACATGGTATGAT
TCCTGTTGCGGTGAAGCTACAAACGGCCACAGCCTCACAGGTGACCAACA
AGAAGAACACCAAGCTGGATCAGAAAGGTCTTAACCGATCCATGGACATC
AAGATCGAAAACTTTGACCTGGCTTTTGGCGAAAAAGTTCTTCTGCAGAA
TGCGAATCTGCTGCTGTCTTACGGACGCCGCTATGGTCTGGTGGGACGCA
ATGGCCTGGGCAAGACTACACTGCTCCGCATGATTGCCGAGCGACAGCTA
CAGATCCCTTCGCACATATCGGTGCTGCACGTGGAGCAGGAGGTGGTTGG
CGATGACACACCAGCAGTGGAGAGTGTGCTGGAATGTGATACTGAGCGAA
CGAGACTTCTGACCCGCGAGAAGGAGATTCTGGCTGCCCTTAACAATGGA
GTTCAGGATGCGACGCTGTCCAATGAGCTGAGCGAGACCTACGCCTCTCT
GCAGAACATCGAGGCGGACAAGGCTGTGGCCCGCGCATCTGTGATACTTA
AGGGCTTGGGATTCGATGCAGATATGCAGCTGCGTCCAACTAAATCCTTC
TCAGGCGGCTGGCGCATGCGTCTTGCTTTGGCCAGGGCACTGTTCTCAAA
ACCCGATCTGTTACTGCTCGATGAGCCGACGAACATGTTAGACATCAAAG
CCATTATTTGGCTGGAAAACTATCTGCAGACATGGGCCACCACCATTCTG
GTAGTTTCTCACGATCGCAACTTCCTGGACACGGTGCCGACAGACATTAT
TCACCTACATTCCCAGGAACTGGAGGCATACAAGGGAAACTATGAACAGT
TCGAGAAGACCAAGACGGAGAAGCTGAAGTCCCAAAGACGTGAATACGAG
GCCCAAATGGCTCACAGAGCTCATGTCCAAGACTTCATCGATCGCTTCCG
ATACAACGCAAACCGTGCCTCGTCTGTGCAATCCAAAATTAAAATGCTCG
AAAAGCTGCCGGAACTAAAGCCAGTGGAAAAGGAGACTGTGGTCACGCTC
AAATTCCCCGAAGTGGAACCCCTTAATCCTCCCGTGCTGGCCATTTCGGA
GGTTACTTTCCGTTACAATCCAGAAGATCCACTGCCCATCTTCAAGGGCG
TCAATCTCTCAGCCACATCGGACTCTCGAATTTGCATTGTCGGAGAAAAC
GGAGCGGGAAAGTCGACGCTGCTGAAGATTATTGTCGGTCAACTGAGCAC
TATTCACGGAAACATTGTCCTGCATCGCGGTCTTCGAATTGGATATTTTG
CGCAGCACCATGTGGACCATCTGAATATGAATGTAACGTGTGTGGGAGTT
TTGGCAGAACTGTTTCCTGGTCGCCCGGACGAAGAGTATCGCCGGCAGTT
GGGCAGCTTCGGCATATCCGGACCACTGGCACTGCAGAGCATTGCCAGTT
TATCTGGAGGACAAAAATCACGAGTGGCCTTAGCAAAGATGTGCATGGCG
GAGCCAAATTTCCTGGTGCTCGATGAGCCGACTAATCACTTGGACATTGA
AACCATTGATGCTTTGGGCCGAGCCATAAATGCCTTTAAGGGCGGCGTAA
TCCTGGTTTCCCACGACGAACGCCTCATTAAGGTCGTCTGCAAGGAACTC
TGGGTGTGTGGCAATCGCACAGTCAGAGCGATCGAAGGTGGTCTGGACGA
GTATAAGCGCGAGGTTTACAAGGAAATCGAAGCTAATAGTGCAAGCTTTC
TAGACCAT
BO26802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9330-RA | 2127 | CG9330-PA | 1..2124 | 17..2140 | 10605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9330-RA | 2384 | CG9330-RA | 130..2253 | 17..2140 | 10605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19587174..19587822 | 586..1234 | 3245 | 100 | Plus |
| 3L | 28110227 | 3L | 19588123..19588613 | 1408..1898 | 2455 | 100 | Plus |
| 3L | 28110227 | 3L | 19586535..19586791 | 105..361 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 19586892..19587115 | 362..585 | 1120 | 100 | Plus |
| 3L | 28110227 | 3L | 19587881..19588055 | 1234..1408 | 860 | 99.4 | Plus |
| 3L | 28110227 | 3L | 19588829..19588980 | 1989..2140 | 760 | 100 | Plus |
| 3L | 28110227 | 3L | 19588679..19588772 | 1898..1991 | 470 | 100 | Plus |
| 3L | 28110227 | 3L | 19586382..19586470 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:18:01 has no hits.
BO26802.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:26 Download gff for
BO26802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9330-RA | 128..2251 | 17..2142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:34 Download gff for
BO26802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9330-RA | 130..2253 | 17..2142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:57 Download gff for
BO26802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9330-RA | 130..2253 | 17..2142 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:57 Download gff for
BO26802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19586382..19586469 | 17..104 | 100 | -> | Plus |
| 3L | 19586535..19586791 | 105..361 | 100 | -> | Plus |
| 3L | 19586892..19587115 | 362..585 | 100 | -> | Plus |
| 3L | 19587174..19587821 | 586..1233 | 100 | -> | Plus |
| 3L | 19587881..19588054 | 1234..1407 | 99 | -> | Plus |
| 3L | 19588123..19588613 | 1408..1898 | 100 | -> | Plus |
| 3L | 19588680..19588771 | 1899..1990 | 100 | -> | Plus |
| 3L | 19588831..19588980 | 1991..2142 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:34 Download gff for
BO26802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19579482..19579569 | 17..104 | 100 | -> | Plus |
| arm_3L | 19579635..19579891 | 105..361 | 100 | -> | Plus |
| arm_3L | 19579992..19580215 | 362..585 | 100 | -> | Plus |
| arm_3L | 19580981..19581154 | 1234..1407 | 99 | -> | Plus |
| arm_3L | 19580274..19580921 | 586..1233 | 100 | -> | Plus |
| arm_3L | 19581223..19581713 | 1408..1898 | 100 | -> | Plus |
| arm_3L | 19581780..19581871 | 1899..1990 | 100 | -> | Plus |
| arm_3L | 19581931..19582080 | 1991..2142 | 98 | | Plus |
BO26802.pep Sequence
Translation from 16 to 2158
> BO26802.pep
MSEYTSILQREFPKIDHELLTYVVGVLTGSEEDFESGDDIFEAVGDILQS
VDCDRSEESVRTLCEQFLNIMKNNEVNVERKVLNAPVNIEEMAKNMERLD
KDMQSIWVANKDGANKVDSKKLGKAEAKLQQKQEKRQEVNKHGMIPVAVK
LQTATASQVTNKKNTKLDQKGLNRSMDIKIENFDLAFGEKVLLQNANLLL
SYGRRYGLVGRNGLGKTTLLRMIAERQLQIPSHISVLHVEQEVVGDDTPA
VESVLECDTERTRLLTREKEILAALNNGVQDATLSNELSETYASLQNIEA
DKAVARASVILKGLGFDADMQLRPTKSFSGGWRMRLALARALFSKPDLLL
LDEPTNMLDIKAIIWLENYLQTWATTILVVSHDRNFLDTVPTDIIHLHSQ
ELEAYKGNYEQFEKTKTEKLKSQRREYEAQMAHRAHVQDFIDRFRYNANR
ASSVQSKIKMLEKLPELKPVEKETVVTLKFPEVEPLNPPVLAISEVTFRY
NPEDPLPIFKGVNLSATSDSRICIVGENGAGKSTLLKIIVGQLSTIHGNI
VLHRGLRIGYFAQHHVDHLNMNVTCVGVLAELFPGRPDEEYRRQLGSFGI
SGPLALQSIASLSGGQKSRVALAKMCMAEPNFLVLDEPTNHLDIETIDAL
GRAINAFKGGVILVSHDERLIKVVCKELWVCGNRTVRAIEGGLDEYKREV
YKEIEANSASFLDH
BO26802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9330-PA | 708 | CG9330-PA | 1..708 | 1..708 | 3597 | 100 | Plus |
| CG1703-PB | 901 | CG1703-PB | 274..880 | 97..700 | 1166 | 42.9 | Plus |
| CG1703-PA | 901 | CG1703-PA | 274..880 | 97..700 | 1166 | 42.9 | Plus |
| CG9281-PD | 611 | CG9281-PD | 5..603 | 127..708 | 1055 | 39.3 | Plus |
| CG9281-PC | 611 | CG9281-PC | 5..603 | 127..708 | 1055 | 39.3 | Plus |
