BO26804.complete Sequence
1663 bp assembled on 2010-08-18
GenBank Submission: KX794973
> BO26804.complete
GAAGTTATCAGTCGACATGGCGTCCACCAAGTACGACAGCTTTGAGAAGA
TATGGTCTGGGCCAAAGGACAAGGAGTACTACGGTCCGGATATGACGCTG
GGCGAGGTGGCACTGATCATCCTGCGTCTGTACTCGGACAAGGTGATGCA
GGTGTATGATCCCACGGGCGAGGAGCTCACCGGTAGTCAGTTGCTGGAGC
AAAGTCGTCGATTGGCCCACGCCTTTCAACGATTGAAGCTGCAACGCGGC
GATGTGGTTGGCATTTCGGCCAAGAACACCACCTATCTCACCGAAGTGGT
CATCGCAGCCCTGCTGAATGGCACACCCATCAACCCACTGCATCCGGACT
TCGATGCGGAAACCACGGCCTATATGTTCGAGATCACGAAGCCCAAGGTG
ATATTCTGCGACCTGGACAACTACCAGACCTTGAGCGCGGTCAAAAGCAG
TCTCAAGTTCAAGACGGAGATCATTCTGCTCACTGGAACTCTGCCTGGAG
TGCGTAACATTCAGGATTTGCTTGCAGATGGCTGCACTGGATACGATGAG
AAAACACTCTTTGCCTGCCCGCATTTGTGTGGCGATGATACGGCCTTCAT
CATCACCTCCTCGGGTGTAACCGGTTTGCCAAAGGGCGTAACCCGTTCGC
ATCGCAGTCTGCTGAACAGTGCCAAAATCCCTCAGCTCTTTACCTCGGAT
ACAGTGCTGTTCTGCTTCAGTCCGCTCTATTGGATCAGCTGTATCTTCAC
ACTGCTCGCTTCGCTGGTCAATGGATGTCGCAGGATCATCACCAATCGTC
CTTTCAGCGTGGCGTACTTTGCAGACCTTGTGGAACGACACCAGGTCAGC
TTTGTGCTCACAGTGCCCCACCACATGGCTCTGCTGGCCAAGAGCCCAGA
GAGACAGGAGCTAGCAGCCAAGATGCAGTGTGTTCAGTCCTTCGTGTGCA
GTGGCTCGAAGGTACCGATGGGGATCTGGCGGCAGTTGTACGAGCTACTG
GGTGCGAACAGATTCGCCGTGCTCTACGGTCTCACAGAGACCGGAGGAAT
CTCCAAGAATGTGGGAGGTCCACTGGGCAGCGAGGGCAGGTTGCTGCGAA
ATGTCCAGGTTCGCGTGGTAGACCCACACGGTCAGTCCTTGGGCCCCAAC
CAGACGGGCCAGATCCTGGTGCGGCTCAACCTTCGCTGGGGCGGCTACTA
TCACAATCCGCAGGAGACCCAGGTGACCGTCACGCCCGACGGCAAGTGGT
TGCTCACCGGCGATCATGGATACTTTGACGATGAGGGCTGCCTGCACTTT
CAGTCCCGTGACACCGATGTCTTCAAGTACAATCACTTCCCCATTTATCC
CAAGCAGATCGAGGACGTGATTCTCCATCTGCCCGGAGTCCACGAAGTGG
CTGTCTTCGGAATTCCCGATGAGGTGTCCACCAATCTTACAGCCTGTGCA
GTGGTTCGGAATGAGGATGAGTTGGGTGCCCAGCTGACCGAGGCGGATGT
CAAGGGAGTTGTGGCACAACATCTAAGCGATGCCTTCCACATCCGCGGAG
GAGTCTTCTTTGTGGACAATCTGCCGAAGACGCAGAACAGTAAGGTGCAG
CGCAGGAAGATCTGGTCGCAGTTGAGCGAGGCAACCACACATTTGGCAAG
CTTTCTAGACCAT
BO26804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9993-RA | 1632 | CG9993-PA | 1..1629 | 17..1645 | 8130 | 99.9 | Plus |
| CG17999-RA | 1638 | CG17999-PA | 1223..1442 | 1236..1455 | 290 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9993-RA | 1802 | CG9993-RA | 78..1706 | 17..1645 | 8130 | 99.9 | Plus |
| CG17999-RA | 1691 | CG17999-RA | 1259..1478 | 1236..1455 | 290 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20850242..20851208 | 1645..679 | 4820 | 99.9 | Minus |
| 2R | 25286936 | 2R | 20851706..20852048 | 359..17 | 1715 | 100 | Minus |
| 2R | 25286936 | 2R | 20851449..20851648 | 558..359 | 1000 | 100 | Minus |
| 2R | 25286936 | 2R | 20851267..20851386 | 678..559 | 600 | 100 | Minus |
| 2R | 25286936 | 2R | 20848193..20848412 | 1455..1236 | 290 | 75.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:39:30 has no hits.
BO26804.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:24 Download gff for
BO26804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9993-RA | 74..1702 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:03 Download gff for
BO26804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9993-RA | 78..1706 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:54 Download gff for
BO26804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9993-RA | 78..1706 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:54 Download gff for
BO26804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20850239..20851208 | 679..1647 | 99 | <- | Minus |
| 2R | 20851267..20851386 | 559..678 | 100 | <- | Minus |
| 2R | 20851449..20851647 | 360..558 | 100 | <- | Minus |
| 2R | 20851706..20852048 | 17..359 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:03 Download gff for
BO26804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16738772..16738891 | 559..678 | 100 | <- | Minus |
| arm_2R | 16738954..16739152 | 360..558 | 100 | <- | Minus |
| arm_2R | 16737744..16738713 | 679..1647 | 99 | <- | Minus |
| arm_2R | 16739211..16739553 | 17..359 | 100 | | Minus |
BO26804.pep Sequence
Translation from 16 to 1663
> BO26804.pep
MASTKYDSFEKIWSGPKDKEYYGPDMTLGEVALIILRLYSDKVMQVYDPT
GEELTGSQLLEQSRRLAHAFQRLKLQRGDVVGISAKNTTYLTEVVIAALL
NGTPINPLHPDFDAETTAYMFEITKPKVIFCDLDNYQTLSAVKSSLKFKT
EIILLTGTLPGVRNIQDLLADGCTGYDEKTLFACPHLCGDDTAFIITSSG
VTGLPKGVTRSHRSLLNSAKIPQLFTSDTVLFCFSPLYWISCIFTLLASL
VNGCRRIITNRPFSVAYFADLVERHQVSFVLTVPHHMALLAKSPERQELA
AKMQCVQSFVCSGSKVPMGIWRQLYELLGANRFAVLYGLTETGGISKNVG
GPLGSEGRLLRNVQVRVVDPHGQSLGPNQTGQILVRLNLRWGGYYHNPQE
TQVTVTPDGKWLLTGDHGYFDDEGCLHFQSRDTDVFKYNHFPIYPKQIED
VILHLPGVHEVAVFGIPDEVSTNLTACAVVRNEDELGAQLTEADVKGVVA
QHLSDAFHIRGGVFFVDNLPKTQNSKVQRRKIWSQLSEATTHLASFLDH
BO26804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9993-PA | 543 | CG9993-PA | 1..543 | 1..543 | 2851 | 100 | Plus |
| CG17999-PA | 545 | CG17999-PA | 7..533 | 6..532 | 1550 | 55.9 | Plus |
| CG11453-PA | 539 | CG11453-PA | 4..526 | 2..535 | 791 | 35.9 | Plus |
| CG8834-PA | 535 | CG8834-PA | 3..521 | 1..530 | 751 | 34.3 | Plus |
| CG4830-PA | 534 | CG4830-PA | 8..521 | 6..530 | 742 | 35 | Plus |
