BO26827.complete Sequence
1054 bp assembled on 2010-08-18
GenBank Submission: KX799610
> BO26827.complete
GAAGTTATCAGTCGACATGGCAACCGGCGGAAATAACTCGACCTTTGACC
TCAGTCCCAAGACCCTGGCGGCCGTGGGCGTGGGCCTGGTGGCGGTGGGC
GGGGCTAGCTTCCTACTGTACCGCCATCTGACCCGCGATGTGGTTCCCCA
AAAGTGGCGACGCGTGGGCACCGTGGAGAGGATACACTTTTTTCCGGTCA
AGTCCTGTGCCCCTATGGACATCTCGAAGCCCGGAGTGGAGTACGACTGC
GATGTACTGAGCATGTCCTTTGAGGGAATAAGGGATCGCACCTTGATGGT
GGTCAATGAAAAGAACGAAATGATCACGGCTCGGGTGTATCCGCTTATGA
CCCAGATCAAGTCGAAGAAGGTGTCGCCCAGCAAGCTTGTGTTCAGCGCC
CAGGACATGCCAGACCTGGAGCTGGACTTCGAGAAGCTGGACGGTCCTGG
CAAGGATGTGAAAACTTCCGTTTGGGGCGTTTCCATAGACGTGATGCCCT
GCGGAGATCGGATCAACACGTGGTTCTCCCAGGCCATCCTGAAGAAGGAG
AGCGGCCTCAAGCTAGTTCACTATCCCTATCCGAAACCAGTGAGATGCAC
CAATCCCCGCCTAAAGTCCATGCCATTCATTAGACAGGAGGACTCGGGCA
CTTTTAACGATGCCACCAGCTTTATGCTGATGAACCTTTCGTCGGTCGCC
GATCTTAATACTCGGTTAAAGAATCCGGTGGATGCACTGCAGTTCCGAGG
TAACTTCGAACTGAAAATGGATGTTGATGAGCCCTATGCCGAGGACAATT
GGCAGTGGGTGCGTATAGGCGAAGATGCTGTTTTCCGTACGGTGGCGCCA
TGCACTCGCTGTATTTTTACCAACATTAATGCGAAGACCGCAGAGAGGAG
TTCCGAAGGAGAGCCTCTCAAAACGCTCAGAAGCTATCGCTTGTTCAACT
ACAGTTCGCCGGCTCTGGGCGTTCATATGGGACTTCGGCTGCCGGGAAAG
GTGAAGGCCAACGACGTCGTGTATGTGGAGGACAAGGCAAGCTTTCTAGA
CCAT
BO26827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1665-RA | 1023 | CG1665-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1665-RA | 1189 | CG1665-RA | 53..1072 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9839889..9840516 | 20..647 | 3125 | 99.8 | Plus |
| 2R | 25286936 | 2R | 9840583..9840870 | 646..933 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 9840942..9841046 | 932..1036 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:39:57 has no hits.
BO26827.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:30 Download gff for
BO26827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1665-RA | 38..1057 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:13 Download gff for
BO26827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1665-RA | 53..1072 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:01 Download gff for
BO26827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1665-RA | 53..1072 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:01 Download gff for
BO26827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9839887..9840515 | 17..646 | 99 | -> | Plus |
| 2R | 9840584..9840870 | 647..933 | 100 | -> | Plus |
| 2R | 9840944..9841046 | 934..1038 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:13 Download gff for
BO26827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5727392..5728020 | 17..646 | 99 | -> | Plus |
| arm_2R | 5728089..5728375 | 647..933 | 100 | -> | Plus |
| arm_2R | 5728449..5728551 | 934..1038 | 98 | | Plus |
BO26827.pep Sequence
Translation from 16 to 1054
> BO26827.pep
MATGGNNSTFDLSPKTLAAVGVGLVAVGGASFLLYRHLTRDVVPQKWRRV
GTVERIHFFPVKSCAPMDISKPGVEYDCDVLSMSFEGIRDRTLMVVNEKN
EMITARVYPLMTQIKSKKVSPSKLVFSAQDMPDLELDFEKLDGPGKDVKT
SVWGVSIDVMPCGDRINTWFSQAILKKESGLKLVHYPYPKPVRCTNPRLK
SMPFIRQEDSGTFNDATSFMLMNLSSVADLNTRLKNPVDALQFRGNFELK
MDVDEPYAEDNWQWVRIGEDAVFRTVAPCTRCIFTNINAKTAERSSEGEP
LKTLRSYRLFNYSSPALGVHMGLRLPGKVKANDVVYVEDKASFLDH
BO26827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1665-PA | 340 | CG1665-PA | 1..340 | 1..340 | 1784 | 100 | Plus |
