BO26843.complete Sequence
1609 bp assembled on 2010-08-18
GenBank Submission: KX799928
> BO26843.complete
GAAGTTATCAGTCGACATGGGCAAGTCCTACGTGATAATTGCGAGAATAG
CATTGCTGCTGAATTTAATAATTGCAGCGGTTTCCCACGAAGCCAAAGAT
TTTGACGATTCAATTTTGTATAAAATTGATTTCGAAGTGCCGGATTTAGA
TGTGCAGCCAAGCTTGGGCAATCAGCTGCGAACATTCTACACGCCGGATA
AGGAGAAGTACGACTGCCTGATTCCCACTTTGGAACACCAAAAAGAGGAG
GAAAAGTCCGACAAGCCAGAGTTGTCTCCAATTACTCTGCTGCAGCCCAT
TTTCTCCGCCCTGACTTGCACGTACCGCATCGAGGCCTACTGGTCGTACG
AAATCTGCCATGGCCACCATGTGCGTCAGTATCACGAGGAGCGCGAAGGA
AAGAACGTCAAGTTCCAGGAGTACTACCTGGGCAAATGGACCGATGAAAA
GATGGAAATACTGACAAAAGCCTGGCAAGCAGACATCAAGGCGGGCGTTA
AGCCGAAATACAAAAGCCTGAAGATCGACAACACTCGGTATCCATACTTT
GAGATGGAATACAGCGATGGCACTATGTGCGACATAATTAACGCTCCTCG
CACCACAATGGTGCGTTATGTGTGCTATCCCCATGGTAAGAACGATATCT
ACTCCTTCAAGGAGACATCCTCGTGCAATTATGAGGCCATTATACTTTCC
TCGGCGCTGTGCCCAATTCGCGCCCTTCATGCCGAAGAGACCAAGGAACT
ATCCATACAATGTTTCAACTCCGAATCGAAACCGCACAGACCGCTGAGCA
TGCTGCGGTCGGAGCTAAAGGAATGGGTTGAATCCGAGGCGGATCTGCTG
GTTTTCAAGGAAAAGGCTACGGAAAATCTGTGGCCCAAGACGGATGGCGA
TTTGGTCACCCTTAACTATGGCGGTGATATGGAAAAAGTCCTGCTCGAGC
ATTTCAGGAATGGTGACCTGAAGGTAGACGGAGACTTTCAGCAGCTCCTG
CTGTCTATAGCAGCCTCTGAAACTGGACCAACACCCATCACTGATCTGAC
GCCCCTTAAGGACTTTATATCGGGCAAGAACTGCCTAACTGGGGGCAATG
GCTGGTGGAAGTACGAGTTCTGCTATGGCCGACATGTGCGTCAGTTCCAC
AAAGATAAGACCAGCGAAGTGGAGCTCTTTCTTGGCTACTTCTCAGAGGA
AGCGCATCGTGCTTGGTCCAACGCCAACCCGGACAAGGGTGCACGCCGTT
CCGGCTTCACGACATCCATCTGGCACCATTATGGCAAGGGAACCCACTGC
GAACAGATTGGAGTGCCCCGCGAAGTTGACGTGAAGTTAACCTGCACACC
TGTAACGAACAGCGGCACCGCTGTATCCATGTACCTGCTTGAGCCGAAGA
CGTGCCAGTATATCCTGGTCGTGGAGTCGCCCACAATATGTGATCTCATC
CACAACGCCGATTCCCAGGGCCTAGTTAAACTGGAGAATCTGGACAAGAT
CTTGGTTACGGAAACCGATAAGTCGACTACCAGTTCCGCTTCCGCTCCTG
CTCCAGCTCCAACTTCCAGCACAGATGAGGAGAATCACCCAGCAAGCTTT
CTAGACCAT
BO26843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6766-RA | 1578 | CG6766-PA | 1..1575 | 17..1591 | 7845 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6766-RA | 1882 | CG6766-RA | 109..1683 | 17..1591 | 7845 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12039384..12040202 | 1094..276 | 4095 | 100 | Minus |
| 2L | 23513712 | 2L | 12038830..12039328 | 1591..1093 | 2465 | 99.6 | Minus |
| 2L | 23513712 | 2L | 12040438..12040581 | 160..17 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 12040265..12040379 | 275..161 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:40:08 has no hits.
BO26843.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:33 Download gff for
BO26843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6766-RA | 102..1676 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:16 Download gff for
BO26843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6766-RA | 109..1683 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:03 Download gff for
BO26843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6766-RA | 109..1683 | 17..1593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:03 Download gff for
BO26843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12038828..12039327 | 1094..1593 | 99 | <- | Minus |
| 2L | 12039385..12040202 | 276..1093 | 100 | <- | Minus |
| 2L | 12040265..12040379 | 161..275 | 100 | <- | Minus |
| 2L | 12040438..12040581 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:16 Download gff for
BO26843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12038828..12039327 | 1094..1593 | 99 | <- | Minus |
| arm_2L | 12039385..12040202 | 276..1093 | 100 | <- | Minus |
| arm_2L | 12040265..12040379 | 161..275 | 100 | <- | Minus |
| arm_2L | 12040438..12040581 | 17..160 | 100 | | Minus |
BO26843.pep Sequence
Translation from 16 to 1609
> BO26843.pep
MGKSYVIIARIALLLNLIIAAVSHEAKDFDDSILYKIDFEVPDLDVQPSL
GNQLRTFYTPDKEKYDCLIPTLEHQKEEEKSDKPELSPITLLQPIFSALT
CTYRIEAYWSYEICHGHHVRQYHEEREGKNVKFQEYYLGKWTDEKMEILT
KAWQADIKAGVKPKYKSLKIDNTRYPYFEMEYSDGTMCDIINAPRTTMVR
YVCYPHGKNDIYSFKETSSCNYEAIILSSALCPIRALHAEETKELSIQCF
NSESKPHRPLSMLRSELKEWVESEADLLVFKEKATENLWPKTDGDLVTLN
YGGDMEKVLLEHFRNGDLKVDGDFQQLLLSIAASETGPTPITDLTPLKDF
ISGKNCLTGGNGWWKYEFCYGRHVRQFHKDKTSEVELFLGYFSEEAHRAW
SNANPDKGARRSGFTTSIWHHYGKGTHCEQIGVPREVDVKLTCTPVTNSG
TAVSMYLLEPKTCQYILVVESPTICDLIHNADSQGLVKLENLDKILVTET
DKSTTSSASAPAPAPTSSTDEENHPASFLDH
BO26843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6766-PA | 525 | CG6766-PA | 1..525 | 1..525 | 2815 | 100 | Plus |
