BO26860.complete Sequence
2230 bp assembled on 2010-12-13
GenBank Submission: KX794064
> BO26860.complete
GAAGTTATCAGTCGACATGGTGCGCAAGTCCGGTAGAGTTAAGATTTCTA
GTCGCGATCGCGTTGCCGTTGGCAACATTCTGCTGCGTGGCAAAGTGGGC
GGTGGGCGGGTGGCAGTTGCAGCGGCAGAGGAGGCAGAGGCGGGGCGACG
TCGACGCAGGCGCGACAGCAGCGCCAGCCGAACTGCATCCAGTGACGAAT
CGGAGAGCCACATAATGCACGCGGATGCCCTGGCCTCTGCCTATCCGGCT
GCCTCGCAGCCCCACAGTCCGATCGGCCTCGCCCTCAGCCCCAATGGCGG
TGGGCTGGGACTGAGCAACAGTAGCAACCAGAGCAGCGAGAACTTTGCGC
TCTGCAACGGAAACGGAAATGCGGGCAGCGCAGGAGGCGGAAGTGCCAGC
AGTGGCAGCAACAACAACAACAGCATGTTCTCACCCAACAACAACTTGAG
CGGAAGCGGAAGTGGGACTAACAGCAGTCAGCAGCAATTGCAGCAGCAAC
AACAACAGCAATCACCGACGGTCTGCGCCATTTGTGGAGATCGGGCGACG
GGCAAACATTATGGAGCCTCCAGCTGCGACGGCTGCAAAGGATTCTTCAG
GAGGAGTGTCAGGAAAAATCATCAGTACACTTGCAGATTTGCGCGAAACT
GCGTTGTGGACAAGGACAAACGGAATCAGTGCCGCTACTGCCGGCTGAGG
AAGTGCTTCAAGGCGGGCATGAAGAAGGAGGCGGTGCAAAACGAGCGGGA
TCGCATTAGCTGCCGCCGCACCTCCAATGACGACCCGGATCCGGGCAATG
GGCTGTCTGTGATTTCCTTGGTTAAGGCGGAGAATGAGTCGCGTCAGTCG
AAGGCAGGCGCTGCCATGGAGCCAAACATTAACGAGGACCTCTCCAACAA
GCAGTTCGCGAGCATCAACGATGTCTGCGAGTCGATGAAGCAGCAGCTGC
TGACCCTGGTGGAATGGGCTAAGCAGATTCCGGCCTTTAACGAGCTGCAG
CTGGATGACCAGGTGGCACTGCTACGCGCCCATGCTGGCGAGCATTTGCT
CCTCGGCCTGTCTCGTCGTTCGATGCACTTGAAGGATGTTCTCCTGCTGA
GCAACAATTGTGTGATCACAAGGCACTGTCCAGATCCCCTTGTGTCGCCG
AATTTGGACATCTCCCGGATCGGCGCCCGTATCATCGATGAACTGGTGAC
GGTCATGAAGGATGTGGGTATCGATGACACTGAATTCGCTTGCATCAAGG
CCCTAGTCTTCTTCGATCCCAATGCCAAGGGTCTTAATGAACCGCATCGC
ATCAAATCGCTACGGCATCAGATACTCAATAATCTCGAGGACTACATATC
AGATCGGCAATACGAGTCGCGCGGTCGCTTTGGCGAGATTCTGCTCATCC
TGCCGGTTCTGCAGTCTATTACCTGGCAGATGATCGAGCAGATCCAGTTT
GCCAAGATCTTTGGAGTGGCCCACATTGATTCATTACTGCAGGAAATGTT
GTTGGGAGGAGAGTTGGCCGACAATCCTCTGCCGCTATCGCCGCCCAATC
AGTCAAATGACTACCAGAGTCCCACCCACACAGGCAACATGGAGGGCGGT
AATCAAGTTAACTCCTCTCTGGACTCGCTGGCCACGTCCGGTGGTCCTGG
CTCGCATAGTCTGGACCTGGAGGTGCAGCACATTCAGGCTCTTATCGAGG
CGAACAGTGCGGATGATTCCTTCCGGGCCTACGCGGCCAGCACTGCAGCG
GCAGCCGCTGCAGCCGTCTCGTCCTCCTCCTCTGCACCCGCATCCGTTGC
TCCAGCCTCGATCTCTCCTCCGCTCAACAGCCCCAAGTCACAACATCAAC
ATCAGCAACATGCGACGCATCAGCAACAACAGGAGAGCTCCTACTTGGAC
ATGCCCGTCAAGCACTACAATGGCAGTCGGTCCGGACCGCTGCCAACACA
GCACAGTCCCCAGAGGATGCATCCCTACCAAAGAGCAGTCGCCTCGCCGG
TCGAAGTGTCCAGCGGGGGCGGCGGATTGGGTCTGCGCAATCCTGCCGAT
ATTACGCTCAACGAGTACAACCGGAGCGAGGGTAGCAGTGCCGAGGAGCT
GCTGCGACGAACTCCACTGAAGATCCGGGCTCCCGAGATGCTAACCGCAC
CCGCTGGTTATGGAACGGAACCCTGTCGCATGACACTTAAACAGGAGCCA
GAGACTGGTTACGCAAGCTTTCTAGACCAT
BO26860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hnf4-RB | 2199 | CG9310-PB | 1..2196 | 17..2212 | 10980 | 100 | Plus |
| Hnf4-RE | 2115 | CG9310-PE | 96..2112 | 196..2212 | 10085 | 100 | Plus |
| Hnf4-RA | 2115 | CG9310-PA | 96..2112 | 196..2212 | 10085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hnf4-RB | 2739 | CG9310-RB | 16..2211 | 17..2212 | 10980 | 100 | Plus |
| Hnf4-RE | 3876 | CG9310-RE | 1305..3321 | 196..2212 | 10085 | 100 | Plus |
| Hnf4-RA | 3307 | CG9310-RA | 736..2752 | 196..2212 | 10085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8687889..8688550 | 2168..1507 | 3310 | 100 | Minus |
| 2L | 23513712 | 2L | 8689129..8689629 | 1133..633 | 2505 | 100 | Minus |
| 2L | 23513712 | 2L | 8689814..8690253 | 636..197 | 2200 | 100 | Minus |
| 2L | 23513712 | 2L | 8688620..8688857 | 1509..1272 | 1190 | 100 | Minus |
| 2L | 23513712 | 2L | 8691014..8691194 | 197..17 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 8688921..8689063 | 1271..1129 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 8687781..8687825 | 2212..2168 | 225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6898 | 352..517 | 232 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2432 | 382..511 | 224 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2411 | 386..517 | 220 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6852 | 397..510 | 215 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6923 | 314..506 | 204 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2526 | 314..519 | 202 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2478 | 352..509 | 197 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2962 | 314..510 | 185 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2927 | 405..521 | 172 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6930 | 314..452 | 162 | 62.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1027..1167 | 382..520 | 159 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2563 | 314..509 | 154 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2456 | 1782..1926 | 153 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6802 | 1825..1885 | 140 | 74.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1151 | 352..445 | 139 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1614 | 395..505 | 136 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6860 | 1825..1894 | 135 | 71.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2390 | 1825..1885 | 131 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6781 | 1825..1885 | 131 | 72.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6891 | 1738..1881 | 121 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6802 | 1834..1926 | 118 | 61.1 | Plus |
BO26860.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:58 Download gff for
BO26860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RB | 20..2215 | 17..2214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:25 Download gff for
BO26860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RB | 16..2211 | 17..2214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:19 Download gff for
BO26860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RB | 16..2211 | 17..2214 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:19 Download gff for
BO26860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8691014..8691194 | 17..197 | 100 | | Minus |
| 2L | 8687779..8687824 | 2169..2214 | 95 | <- | Minus |
| 2L | 8687889..8688548 | 1509..2168 | 100 | <- | Minus |
| 2L | 8688621..8688857 | 1272..1508 | 100 | <- | Minus |
| 2L | 8688921..8689058 | 1134..1271 | 100 | <- | Minus |
| 2L | 8689129..8689625 | 637..1133 | 100 | <- | Minus |
| 2L | 8689814..8690252 | 198..636 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:25 Download gff for
BO26860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8687779..8687824 | 2169..2214 | 95 | <- | Minus |
| arm_2L | 8687889..8688548 | 1509..2168 | 100 | <- | Minus |
| arm_2L | 8688621..8688857 | 1272..1508 | 100 | <- | Minus |
| arm_2L | 8688921..8689058 | 1134..1271 | 100 | <- | Minus |
| arm_2L | 8689129..8689625 | 637..1133 | 100 | <- | Minus |
| arm_2L | 8689814..8690252 | 198..636 | 100 | <- | Minus |
| arm_2L | 8691014..8691194 | 17..197 | 100 | | Minus |
BO26860.pep Sequence
Translation from 16 to 2230
> BO26860.pep
MVRKSGRVKISSRDRVAVGNILLRGKVGGGRVAVAAAEEAEAGRRRRRRD
SSASRTASSDESESHIMHADALASAYPAASQPHSPIGLALSPNGGGLGLS
NSSNQSSENFALCNGNGNAGSAGGGSASSGSNNNNSMFSPNNNLSGSGSG
TNSSQQQLQQQQQQQSPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRK
NHQYTCRFARNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCR
RTSNDDPDPGNGLSVISLVKAENESRQSKAGAAMEPNINEDLSNKQFASI
NDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLLGLSR
RSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDV
GIDDTEFACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYE
SRGRFGEILLILPVLQSITWQMIEQIQFAKIFGVAHIDSLLQEMLLGGEL
ADNPLPLSPPNQSNDYQSPTHTGNMEGGNQVNSSLDSLATSGGPGSHSLD
LEVQHIQALIEANSADDSFRAYAASTAAAAAAAVSSSSSAPASVAPASIS
PPLNSPKSQHQHQQHATHQQQQESSYLDMPVKHYNGSRSGPLPTQHSPQR
MHPYQRAVASPVEVSSGGGGLGLRNPADITLNEYNRSEGSSAEELLRRTP
LKIRAPEMLTAPAGYGTEPCRMTLKQEPETGYASFLDH
BO26860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hnf4-PB | 732 | CG9310-PB | 1..732 | 1..732 | 3777 | 100 | Plus |
| Hnf4-PE | 704 | CG9310-PE | 33..704 | 61..732 | 3494 | 100 | Plus |
| Hnf4-PD | 708 | CG9310-PD | 37..708 | 61..732 | 3494 | 100 | Plus |
| Hnf4-PA | 704 | CG9310-PA | 33..704 | 61..732 | 3494 | 100 | Plus |
| Hnf4-PF | 666 | CG9310-PF | 1..666 | 67..732 | 3464 | 100 | Plus |
