BO26871.complete Sequence
1357 bp assembled on 2010-08-18
GenBank Submission: KX798346
> BO26871.complete
GAAGTTATCAGTCGACATGTGTATATCGGAAACTAAGGAACCTCCGCATC
TTCCAATTTCCAATTCTGCAGGACAAATATCCAAAATGCTGAAGCCGGCC
CAGAACAAGTCCGAAATGGAGGGAGGTAAGCCCGTGGCGGTGGTCTACGC
CACCGGCTCATCCGCGCGCAACAGCGGAAGTGCTAGCGGCATCGGCAACG
TGGGACGCATGGGCGCCTTTAGTCAGATGGGCAGTCAAGGGCAGTTTATA
CGACTGCAGGACAACGGACTGTCCATTCCAAAAACAGAAGCAGGTACCAC
CTACACCACCGTTTCGGCGCAAAAGACTTCGGGTGCTGGCAGTGGTCATT
ACGACTTGCCCTTGAAGGGAGATCGCTATGTGAAGTTTACACCAAATCCC
ATAAAAATGAAATCAAAACTCCATGCCATTCAGAGCAACTCGTTGCACTC
CATGTCGGCCTCCTCATCGTCCGTTCAAAGGAAACGCAAGCCGGACAAGG
CAGGCAAAGGTTTGCGCCATTTCTCGATGAAGGTATGCGAAAAGGTGGAG
GAGAAGGGCAAGACCACCTACAATGAGGTGGCCGACGACCTGGTCAGCGA
GGAGATGAAGAACAATGCGTACGACAACAACTGTGATCAAAAGAATATCC
GACGTCGTGTCTACGATGCGCTCAACGTACTGATGGCAATCAATGTTATT
TCCAAGGACAAGAAGGAGATTCGCTGGATAGGACTGCCCGCAAATTCGAC
AGAGACATTTCTGGCCCTGGAAGAGGAAAACTGTCAGCGCCGCGAGCGAA
TAAAACAGAAAAACGAAATGTTGCGCGAAATGATCATGCAGCATGTGGCG
TTCAAGGGATTGGTCGAGCGGAACAAGCGAAACGAGAGCCAAGGCGTGGT
GCCTTCCCCGAATGCCTCGATCCAGCTACCGTTCATCATCGTGAACACGC
ACAAGTCCACGAAAATCAACTGCAGTGTGACCAACGACAAGTCCGAATAC
ATATTCAAGTTCGACAAAACCTTCGAAATGCACGATGACATTGAGGTGCT
CAAGCGTATGGGATTCCTATTGGGACTGGATAAGGGCGAATGCACGCCGG
AGAACATTGAACGAGTCAAGTCGTGGGTGCCTCCAAACCTTGCCAAATAC
GTAGAAGCCTACGGCACCGGCAAGACTGGCGAAAATATGTACGAATCGGA
TGACGAGGACAATGAGTTCAACGGGTACCTGGAGTCGGCCAATGAGTCCC
AGGGCTTTGCACAACACTCGGCACAACACACCACCGATGGCGAGTTCAAG
CTGGAGATGGATGATGACGAGCTGGACGACGACATTGATGCAAGCTTTCT
AGACCAT
BO26871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dp-RB | 1326 | CG4654-PB | 1..1323 | 17..1339 | 6615 | 100 | Plus |
Dp-RA | 1338 | CG4654-PA | 67..1335 | 71..1339 | 6345 | 100 | Plus |
Dp-RC | 1254 | CG4654-PC | 1..1251 | 86..1339 | 6190 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dp-RB | 2448 | CG4654-RB | 91..1413 | 17..1339 | 6615 | 100 | Plus |
Dp-RA | 2526 | CG4654-RA | 680..1948 | 71..1339 | 6345 | 100 | Plus |
Dp-RC | 1913 | CG4654-RC | 69..1335 | 70..1339 | 6270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13226002..13226335 | 421..754 | 1670 | 100 | Plus |
2R | 25286936 | 2R | 13226402..13226641 | 753..992 | 1200 | 100 | Plus |
2R | 25286936 | 2R | 13225412..13225625 | 17..230 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 13226984..13227167 | 1156..1339 | 920 | 100 | Plus |
2R | 25286936 | 2R | 13225807..13225938 | 289..420 | 660 | 100 | Plus |
2R | 25286936 | 2R | 13226845..13226929 | 1073..1157 | 425 | 100 | Plus |
2R | 25286936 | 2R | 13226700..13226783 | 991..1074 | 420 | 100 | Plus |
2R | 25286936 | 2R | 13225690..13225751 | 229..290 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:40:31 has no hits.
BO26871.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:38 Download gff for
BO26871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dp-RB | 89..1411 | 17..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:25 Download gff for
BO26871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dp-RB | 91..1413 | 17..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:11 Download gff for
BO26871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dp-RB | 91..1413 | 17..1341 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:11 Download gff for
BO26871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13225412..13225624 | 17..229 | 100 | -> | Plus |
2R | 13225691..13225751 | 230..290 | 100 | -> | Plus |
2R | 13225809..13225938 | 291..420 | 100 | -> | Plus |
2R | 13226002..13226335 | 421..754 | 100 | -> | Plus |
2R | 13226404..13226639 | 755..990 | 100 | -> | Plus |
2R | 13226700..13226782 | 991..1073 | 100 | -> | Plus |
2R | 13226846..13226929 | 1074..1157 | 100 | -> | Plus |
2R | 13226986..13227167 | 1158..1341 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:25 Download gff for
BO26871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9112917..9113129 | 17..229 | 100 | -> | Plus |
arm_2R | 9113196..9113256 | 230..290 | 100 | -> | Plus |
arm_2R | 9113314..9113443 | 291..420 | 100 | -> | Plus |
arm_2R | 9113507..9113840 | 421..754 | 100 | -> | Plus |
arm_2R | 9113909..9114144 | 755..990 | 100 | -> | Plus |
arm_2R | 9114205..9114287 | 991..1073 | 100 | -> | Plus |
arm_2R | 9114351..9114434 | 1074..1157 | 100 | -> | Plus |
arm_2R | 9114491..9114672 | 1158..1341 | 98 | | Plus |
BO26871.pep Sequence
Translation from 16 to 1357
> BO26871.pep
MCISETKEPPHLPISNSAGQISKMLKPAQNKSEMEGGKPVAVVYATGSSA
RNSGSASGIGNVGRMGAFSQMGSQGQFIRLQDNGLSIPKTEAGTTYTTVS
AQKTSGAGSGHYDLPLKGDRYVKFTPNPIKMKSKLHAIQSNSLHSMSASS
SSVQRKRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSEEMKNN
AYDNNCDQKNIRRRVYDALNVLMAINVISKDKKEIRWIGLPANSTETFLA
LEEENCQRRERIKQKNEMLREMIMQHVAFKGLVERNKRNESQGVVPSPNA
SIQLPFIIVNTHKSTKINCSVTNDKSEYIFKFDKTFEMHDDIEVLKRMGF
LLGLDKGECTPENIERVKSWVPPNLAKYVEAYGTGKTGENMYESDDEDNE
FNGYLESANESQGFAQHSAQHTTDGEFKLEMDDDELDDDIDASFLDH
BO26871.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dp-PB | 441 | CG4654-PB | 1..441 | 1..441 | 2292 | 100 | Plus |
Dp-PA | 445 | CG4654-PA | 20..445 | 16..441 | 2199 | 99.5 | Plus |
Dp-PC | 417 | CG4654-PC | 1..417 | 24..441 | 2155 | 99.8 | Plus |