BO26883.complete Sequence
4546 bp assembled on 2011-01-04
GenBank Submission: KX795387
> BO26883.complete
GAAGTTATCAGTCGACATGTTCGCCCCCCGAAACTCGTCGCCAGTTGCCA
TTTACGGCAAGGAGGATGTGGCAGCCTACGAGATAAAACTCAAAAAGGTC
CTGGGCCTCACCGTGTGCAGCAATGCGGCTCTGGATGTGTCCCCAGTCAG
CGGCCTGCTGGCCTATCCAGCTGGCTGCACCGTGGTGCTCTTCAACGCAA
AACGCCAGACACAGGCCTACCTGGTCAACACCTCCCGCAAAGCATTCACA
TCCGTGGCGTTCTCCCGGTGTGGTCGCTACGTGGCCACCGGGGAGTGTGG
CATCAATCCGGCCATCAAGGTCTGGGAGCTGGAGACTCCGAACGGAAGTC
TGGAGCACTGCAGCGGCGGCAGTGTTGTTGCAGAGTTTGTGGACCACAAA
TACGCCGTCACTTGTGTGGCCTTTTCGCCCACTGGCAAGTACCTGGTTTC
GGTGGGCTCCCAGCACGACATGATTGTGAATGTGTTCGACTGGCGGGCCA
ACCTCAAGATGGCCTCGAATAAAATCAGCTCCAAGGTGGCTGCCGTGTGC
TTTTCCGAGGATGGCAGCTATTTTGTGACCGTGGGTAATCGCCACGTGAA
ATACTGGTATCTAGAGGGTGGCAGAAAGTACAAGGATCCTATTCCCCTGA
TGGGTCGCAGCGCCATTCTGGGCGATTTGCGGGACAACGACTTTTGTGCG
GTGGCGTGCGGCAAGGGGATCTGTGCGGAGAGCACGTACGCCATCACGCG
GCAAGGACACTTGGTGGAGTTCAGCTCCCGCCGCCTGCTCGACAAGTGGG
TGCAGTGCCGCACCACCAATGCCAACTGTATCTGCGTGAATGAGAGGTTC
ATTCTCGTGGGGTGTGCGGAGTCCATCATTCGCATCTTCAATTCGGCCAC
GCTGGAATACGTGACCACTCTGCCTAGAACTCATTACTTGGGCGTGGATG
TGGCCCAGGGCATCCAGATCAACCACATCATGTCGGTGCCACAGCAGGCC
AAGTTCCCCGACTGCATTGCCATGGTGTTCGACGAACAGCGTTCGAAGGT
GAGTTGCGTTTACAACGATCACTCTCTTTACATCTGGGATCTGCGCGACA
TCTCACGAGTGGGCAAGTCGCACTCGTTCCTTTATCACTCCACTTGCATC
TGGGGCGTGGAGACAGTGCCATATAACGTGGAGCGGGAGCCATCGCAAAC
CCTTCCAGAGGAATGCTTCGTCACCTGCTCGTCGGACGACACGATCCGTG
TCTGGGGTTTGGACGGATGCACCAACAACGATATCTACCGAAGGAACATC
TACTCCAAGGAGCTGCTGAAGATCGTCTACAGCGACGATGAACTGCAGTT
TATCAAGGATCAGGGCTCGTCTCTGTTCGACAAAGCTGGAAACTCCTCCT
ACGATGGAAGGAATGGAGTGCGGTGCATCAAGATCAGTCCGGAACTGCAG
CACTTGGCAAGTGGAGATCGGTGCGGCAACATACGCGTGTACAGTCTGGT
CAATCTGCGCCTGCTCACCACCATCGAAGCCCATGAGTCTGAGGTGCTTT
GTTTGGAGTATTCCAACGAGAAGATCGAGCGAAAGTTGTTGGCCAGTGCC
AGTAGGGATCGGCTGATCCATGTGTTCGACGTGGCGCAGAATTATCTACT
GCTACAAACGCTGGACGATCACAGCTCCTCCATCACCTCCATCAAGTTTG
TAGGTGCAGGACTTAACTTCCAGATGATCAGTTGTGGCGCCGACAAGTCC
ATTATGTTTAGGAGTTTTCAGGGAAATATTTTCATGAGGGGCACCAACAC
CTCAGGAAAGACGACGTTGTACGACATGGAGGTGGACTCGAATGCCAAGC
ACATTTTGACAGCCTGCCAGGATCGCAACGTGCGGGTTTACGGAACCCAG
AATGCCAAGCAAACAAAGACCTTCAAGGGCTCTCATTCAGACGAAGGAAG
TCTGATCAAACTCAGTCTCGATCCCAGTGGCATCTATGTGGCCACTTCCT
GCACGGATAAAACGCTTGCTGTTTATGATTACTACTCGAACGAGTGCATG
GCAAGGATGTACGGTCACAGCGAGTTGGTCACGGGACTTAAGTTCACCAA
CGATTGCAGACATTTAATTTCCGCAAGTGGCGACGGTTGCATTTTCATAT
GGCAAGTGCCACACGATATGATAGTGACCATGCAGGCCAGGATGTCGCAA
CAGCGTCTCAGATCTGGGCATGCTCCATTGCCGCGACCCTTGGCTCCTAT
TTCGCCACCGGATGGTATTGTCCTGGAATCGCCAACCAGTGAAATAGAGC
AGCCGCAATTGCAGCCCAAGTTTGGAGTGGCCGAAAGGTTTTCCGATGTG
GGTCAACTGCCTCAGTGGGCGATGCGAAAAGCAGCTGCCGATTCGGATAG
TGGGGCCTTATCCATACCCACGCCCAGTGGTGGATCTGCGACTGTGCCTG
GCATGCATGCTGCTTCATCGATGGGAAATCTAAGCTCATCGCCCAGTCAA
CAGATGACAGGACTGGCACCACGGGCCAGGGGAAGATGGGCCCAAAGGAG
CACTCAGTTGGAAACGGCCGATGACCTGCGTTCCAACTCCGAAAGTCCTC
TGGGAACCGTTTCGTCTGTAGGTGGTCACAGCGGTGTGAATGTCCAGACT
TCTGATTACAATAGTGCCTCTTCCAAGGACATTACGTACAATCAAACCTA
CTTGAGTGAGGACTCCTCCATCGATTCGGGAATGGAGACGCGAAGGGGCG
AACTCAAGTTTATTGGCAGCAGCAACAATGGAACGGTGGTCACTGTGTCC
TCCGTTTCCTCGATTGCTGTTTCTGCCTCCAACGGTGCCATGTCAACGGG
TTCTGGAGCTGCCCAACAGCGTCTCCAGTTGCCGGATAAACGGTTAAAGC
CGGGTCTGCGATTCGATACCCATACCCATGATCACGATGGGGATGTGGAG
GACATCTCCGATGGAGAGAGAACTAGCTCCGATCACGGAATGTTTTACAA
CAACCTCGCGCCCAGCACGCCAACAGATTTCAAGGTGACGGCCATGAACG
AGGATGAGCTGCGCAAATCGGTGCGCCGTCAGAAGTTTGAAAAGTCCGGC
CTTCAGCTTACCCCTTCGGCCCTCAGCGGAAACGGAAGTTCGCATACTGC
GAGCACCGGAACTGGGACCTCCGATACCGAAGACGAAGGCTCCACGCCCA
GTGCCGAAAATGCCGAACGGTCGCTGGCCTCGACGTTGGGTGGCAGCTCG
GAGAATCTGCCCCAGAGCAGCACCAACAGCTTCCTGCACGCCGCTTTGCC
AGAGGGACCGGGACTAACAACGCCAATGGAAAGGGGTGGCAGCAGTCGCC
GCAGCATCAGCGCCAAGCACAATACGGAGAATGGGAAAAGCGTGGCCGCG
CCGCCCACCATCACCAAGTCGTATACAAGTACCAAAAAGGAGGAGCTGTT
GCAGGTCATCAACAAGGTCAAGCAGCAGCTGGAGAATGTAGGCCATAGAC
CCCTCCGGGGAAGCCATAGCATATCGGACCTCAGTCTGGCAGCCAACTTG
GATGGATCAAGGAATGCGGGCGGAGGACCAGGACGTTACCAGAAGCCAGG
CAATCCCAAAACGCTCAATCCCATGCCCATCGAGGAGTCCTCCATACGCC
GCGCTTGCTCGCTGAGCGACCTGCACATGGGCAACTTTGGCAAGCCTGGA
AAATCGCAGAATGGCACTCCACAGAAGCCGCAGGTCCAGCACCGAAATGG
AAACGTCTCGCGATCGGCCAGCAAAAGGAACAGTTTGCAGGGCAAAACTG
GGTTGGGTGCCTCCAGCAACTCAATGAATGTTCTCAATCAGGGCAGCGAC
TCGGAACCCGAGGATAGCAACCGCTTGCGCAGTGCCAGCAACGGACAGGG
ACGCAGCAACGGACCCATTGCTGCGAATCGCCAGTACAGCAACAAGATTA
ACAATGTCAACAACAATCGGCGAAAGACGCCAAACTTTAGCAGTGCCACG
CCCATGCAGGACGACTCCAGCTCCGAGGAGACGCCCAATAGCACTGTCAA
CAACAAACCCATTGTGCCACCAAGGCCTAGGAACCTGGCATTTGATCACA
AGAGCAAACTGATGATCAACAATAGTGGCAGCCCCGGCGGAAATGCCAAA
CAGCGGAGCGGAGTGACTTCCACAGAGGATTTTGAGGGCACAGATCCTGA
AGCCCAAGTACACAATGTGATCAATAAACTTTATACAACCACACAGGCAG
CTATGCAGCTGCATGCGAATCTAAAGAATACGCTACTGCTGAAGGAACTG
GAGAACGCCCTGATCATGTCCAGGAATATGCTAAGCAGCATCACCAATCG
ACAAGCGGATAAGACGAACAACGGAGGTGGGGGATTAGGAGTGGGTGGAA
GTGGGGGATTGAACCACGATCAGCTGAACGCTGACAACGGAGACTATCTG
ATGATGGTCAACAACTGTGCCGATCTTTTGAGCAATTTACGCACGAAGCA
CAAACCCGATGACTGTGAGAATAACTCCGCAAGCTTTCTAGACCAT
BO26883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-RB | 4515 | CG7337-PB | 1..4512 | 17..4528 | 22560 | 100 | Plus |
| CG7337-RE | 4527 | CG7337-PE | 78..4524 | 82..4528 | 22235 | 100 | Plus |
| CG7337-RA | 4527 | CG7337-PA | 78..4524 | 82..4528 | 22235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-RB | 6246 | CG7337-RB | 757..5269 | 16..4528 | 22565 | 100 | Plus |
| CG7337-RE | 6049 | CG7337-RE | 1104..5550 | 82..4528 | 22235 | 100 | Plus |
| CG7337-RA | 6406 | CG7337-RA | 1104..5550 | 82..4528 | 22235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1935736..1936991 | 1769..3024 | 6280 | 100 | Plus |
| 2L | 23513712 | 2L | 1934959..1935684 | 1047..1772 | 3630 | 100 | Plus |
| 2L | 23513712 | 2L | 1934477..1934900 | 627..1050 | 2120 | 100 | Plus |
| 2L | 23513712 | 2L | 1937054..1937375 | 3025..3346 | 1610 | 100 | Plus |
| 2L | 23513712 | 2L | 1933805..1934050 | 174..419 | 1230 | 100 | Plus |
| 2L | 23513712 | 2L | 1934118..1934328 | 418..628 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 1942250..1942451 | 3995..4196 | 1010 | 100 | Plus |
| 2L | 23513712 | 2L | 1942784..1942962 | 4350..4528 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 1942510..1942663 | 4197..4350 | 770 | 100 | Plus |
| 2L | 23513712 | 2L | 1941755..1941903 | 3696..3844 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 1937441..1937586 | 3345..3490 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 1938508..1938620 | 3488..3600 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 1941579..1941677 | 3597..3695 | 495 | 100 | Plus |
| 2L | 23513712 | 2L | 1932054..1932147 | 81..174 | 470 | 100 | Plus |
| 2L | 23513712 | 2L | 1941971..1942046 | 3845..3920 | 380 | 100 | Plus |
| 2L | 23513712 | 2L | 1942107..1942182 | 3920..3995 | 380 | 100 | Plus |
| 2L | 23513712 | 2L | 1928509..1928580 | 16..87 | 345 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:43:12 has no hits.
BO26883.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:00 Download gff for
BO26883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RB | 105..4611 | 22..4530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:31 Download gff for
BO26883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RB | 763..5269 | 22..4530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:50 Download gff for
BO26883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RB | 763..5269 | 22..4530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:50 Download gff for
BO26883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1934119..1934328 | 419..628 | 100 | -> | Plus |
| 2L | 1941971..1942046 | 3845..3920 | 100 | -> | Plus |
| 2L | 1942108..1942182 | 3921..3995 | 100 | -> | Plus |
| 2L | 1928515..1928575 | 22..82 | 100 | -> | Plus |
| 2L | 1932056..1932147 | 83..174 | 100 | -> | Plus |
| 2L | 1933806..1934049 | 175..418 | 100 | -> | Plus |
| 2L | 1934479..1934898 | 629..1048 | 100 | -> | Plus |
| 2L | 1934961..1935683 | 1049..1771 | 100 | -> | Plus |
| 2L | 1935739..1936991 | 1772..3024 | 100 | -> | Plus |
| 2L | 1937054..1937373 | 3025..3344 | 100 | -> | Plus |
| 2L | 1937441..1937583 | 3345..3487 | 100 | -> | Plus |
| 2L | 1938508..1938619 | 3488..3599 | 100 | -> | Plus |
| 2L | 1941582..1941677 | 3600..3695 | 100 | -> | Plus |
| 2L | 1941755..1941903 | 3696..3844 | 100 | -> | Plus |
| 2L | 1942251..1942451 | 3996..4196 | 100 | -> | Plus |
| 2L | 1942510..1942663 | 4197..4350 | 100 | -> | Plus |
| 2L | 1942785..1942962 | 4351..4530 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:31 Download gff for
BO26883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1941971..1942046 | 3845..3920 | 100 | -> | Plus |
| arm_2L | 1942108..1942182 | 3921..3995 | 100 | -> | Plus |
| arm_2L | 1928515..1928575 | 22..82 | 100 | -> | Plus |
| arm_2L | 1932056..1932147 | 83..174 | 100 | -> | Plus |
| arm_2L | 1933806..1934049 | 175..418 | 100 | -> | Plus |
| arm_2L | 1934119..1934328 | 419..628 | 100 | -> | Plus |
| arm_2L | 1934479..1934898 | 629..1048 | 100 | -> | Plus |
| arm_2L | 1934961..1935683 | 1049..1771 | 100 | -> | Plus |
| arm_2L | 1935739..1936991 | 1772..3024 | 100 | -> | Plus |
| arm_2L | 1937054..1937373 | 3025..3344 | 100 | -> | Plus |
| arm_2L | 1937441..1937583 | 3345..3487 | 100 | -> | Plus |
| arm_2L | 1938508..1938619 | 3488..3599 | 100 | -> | Plus |
| arm_2L | 1941582..1941677 | 3600..3695 | 100 | -> | Plus |
| arm_2L | 1941755..1941903 | 3696..3844 | 100 | -> | Plus |
| arm_2L | 1942251..1942451 | 3996..4196 | 100 | -> | Plus |
| arm_2L | 1942510..1942663 | 4197..4350 | 100 | -> | Plus |
| arm_2L | 1942785..1942962 | 4351..4530 | 98 | | Plus |
BO26883.pep Sequence
Translation from 16 to 4546
> BO26883.pep
MFAPRNSSPVAIYGKEDVAAYEIKLKKVLGLTVCSNAALDVSPVSGLLAY
PAGCTVVLFNAKRQTQAYLVNTSRKAFTSVAFSRCGRYVATGECGINPAI
KVWELETPNGSLEHCSGGSVVAEFVDHKYAVTCVAFSPTGKYLVSVGSQH
DMIVNVFDWRANLKMASNKISSKVAAVCFSEDGSYFVTVGNRHVKYWYLE
GGRKYKDPIPLMGRSAILGDLRDNDFCAVACGKGICAESTYAITRQGHLV
EFSSRRLLDKWVQCRTTNANCICVNERFILVGCAESIIRIFNSATLEYVT
TLPRTHYLGVDVAQGIQINHIMSVPQQAKFPDCIAMVFDEQRSKVSCVYN
DHSLYIWDLRDISRVGKSHSFLYHSTCIWGVETVPYNVEREPSQTLPEEC
FVTCSSDDTIRVWGLDGCTNNDIYRRNIYSKELLKIVYSDDELQFIKDQG
SSLFDKAGNSSYDGRNGVRCIKISPELQHLASGDRCGNIRVYSLVNLRLL
TTIEAHESEVLCLEYSNEKIERKLLASASRDRLIHVFDVAQNYLLLQTLD
DHSSSITSIKFVGAGLNFQMISCGADKSIMFRSFQGNIFMRGTNTSGKTT
LYDMEVDSNAKHILTACQDRNVRVYGTQNAKQTKTFKGSHSDEGSLIKLS
LDPSGIYVATSCTDKTLAVYDYYSNECMARMYGHSELVTGLKFTNDCRHL
ISASGDGCIFIWQVPHDMIVTMQARMSQQRLRSGHAPLPRPLAPISPPDG
IVLESPTSEIEQPQLQPKFGVAERFSDVGQLPQWAMRKAAADSDSGALSI
PTPSGGSATVPGMHAASSMGNLSSSPSQQMTGLAPRARGRWAQRSTQLET
ADDLRSNSESPLGTVSSVGGHSGVNVQTSDYNSASSKDITYNQTYLSEDS
SIDSGMETRRGELKFIGSSNNGTVVTVSSVSSIAVSASNGAMSTGSGAAQ
QRLQLPDKRLKPGLRFDTHTHDHDGDVEDISDGERTSSDHGMFYNNLAPS
TPTDFKVTAMNEDELRKSVRRQKFEKSGLQLTPSALSGNGSSHTASTGTG
TSDTEDEGSTPSAENAERSLASTLGGSSENLPQSSTNSFLHAALPEGPGL
TTPMERGGSSRRSISAKHNTENGKSVAAPPTITKSYTSTKKEELLQVINK
VKQQLENVGHRPLRGSHSISDLSLAANLDGSRNAGGGPGRYQKPGNPKTL
NPMPIEESSIRRACSLSDLHMGNFGKPGKSQNGTPQKPQVQHRNGNVSRS
ASKRNSLQGKTGLGASSNSMNVLNQGSDSEPEDSNRLRSASNGQGRSNGP
IAANRQYSNKINNVNNNRRKTPNFSSATPMQDDSSSEETPNSTVNNKPIV
PPRPRNLAFDHKSKLMINNSGSPGGNAKQRSGVTSTEDFEGTDPEAQVHN
VINKLYTTTQAAMQLHANLKNTLLLKELENALIMSRNMLSSITNRQADKT
NNGGGGLGVGGSGGLNHDQLNADNGDYLMMVNNCADLLSNLRTKHKPDDC
ENNSASFLDH
BO26883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-PB | 1504 | CG7337-PB | 1..1504 | 1..1504 | 7826 | 100 | Plus |
| CG7337-PD | 1539 | CG7337-PD | 33..1539 | 3..1504 | 7725 | 98.8 | Plus |
| CG7337-PE | 1508 | CG7337-PE | 27..1508 | 23..1504 | 7713 | 100 | Plus |
| CG7337-PA | 1508 | CG7337-PA | 27..1508 | 23..1504 | 7713 | 100 | Plus |
| CG7337-PF | 1554 | CG7337-PF | 33..1554 | 3..1504 | 7699 | 97.8 | Plus |
